Miyakogusa Predicted Gene

Lj5g3v2258230.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2258230.1 Non Chatacterized Hit- tr|A5C8I0|A5C8I0_VITVI
Putative uncharacterized protein (Fragment) OS=Vitis
v,33.81,5e-19,UBN2,NULL; seg,NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,gene.g63373.t1.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48720.1 | Symbols:  | unknown protein; Has 229 Blast hits to...    48   4e-06

>AT1G48720.1 | Symbols:  | unknown protein; Has 229 Blast hits to
           229 proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:18018148-18018441 FORWARD LENGTH=97
          Length = 97

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 26  KSNFTMWKRLMELCLTTSGYRDIMKKGFVEPTEEDKGKADEQQ---VEKDRMLNQKALLL 82
           KSN+  W   M+  L      +I++KGF+EP  E++G   + Q   +   R  ++KAL L
Sbjct: 15  KSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLRDSRKRDKKALCL 72

Query: 83  ICQSMELSVFEKIFHAKSAKEA 104
           I Q ++   FEK+  A SAK+ 
Sbjct: 73  IYQGLDEDTFEKVVEATSAKDG 94