Miyakogusa Predicted Gene
- Lj5g3v2258230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2258230.1 Non Chatacterized Hit- tr|A5C8I0|A5C8I0_VITVI
Putative uncharacterized protein (Fragment) OS=Vitis
v,33.81,5e-19,UBN2,NULL; seg,NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,gene.g63373.t1.1
(214 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48720.1 | Symbols: | unknown protein; Has 229 Blast hits to... 48 4e-06
>AT1G48720.1 | Symbols: | unknown protein; Has 229 Blast hits to
229 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr1:18018148-18018441 FORWARD LENGTH=97
Length = 97
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 26 KSNFTMWKRLMELCLTTSGYRDIMKKGFVEPTEEDKGKADEQQ---VEKDRMLNQKALLL 82
KSN+ W M+ L +I++KGF+EP E++G + Q + R ++KAL L
Sbjct: 15 KSNYDNWSLRMKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLRDSRKRDKKALCL 72
Query: 83 ICQSMELSVFEKIFHAKSAKEA 104
I Q ++ FEK+ A SAK+
Sbjct: 73 IYQGLDEDTFEKVVEATSAKDG 94