Miyakogusa Predicted Gene

Lj5g3v2256190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2256190.1 Non Chatacterized Hit- tr|A9P1I6|A9P1I6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,61.11,0.00000000001,ZF_DNL,Zinc finger, DNL-type;
UNCHARACTERIZED,NULL; UNCHARACTERIZED,Mitochondrial import protein
TIM,CUFF.57073.1
         (284 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27280.1 | Symbols:  | Zim17-type zinc finger protein | chr5:...   190   8e-49
AT1G68730.1 | Symbols:  | Zim17-type zinc finger protein | chr1:...    76   2e-14

>AT5G27280.1 | Symbols:  | Zim17-type zinc finger protein |
           chr5:9617548-9618369 FORWARD LENGTH=212
          Length = 212

 Score =  190 bits (483), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 102/127 (80%), Gaps = 6/127 (4%)

Query: 134 LSKDAAMGLVLSAAMGRGWTTGSGMEGPSAPAAGRDNESGTGNISTFPWSLFTKSPRRRM 193
           LS D AMGLVLSAA  +GWTTGSGMEGPS PA     ++ T  +STFPWSLFTKSPRRRM
Sbjct: 67  LSNDEAMGLVLSAASVKGWTTGSGMEGPSLPA-----KTDTDTVSTFPWSLFTKSPRRRM 121

Query: 194 LVAFTCTICGQRTTRAINPHAYTDGTVFVQCCGCNAYHKLVDHLNLFQETNCYL-NSSFN 252
            VAFTC +CGQRTTRAINPHAYTDGTVFVQCCGCN +HKLVD+LNLF E   Y+ +SSF+
Sbjct: 122 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEVKYYVSSSSFD 181

Query: 253 YKGPVWN 259
           Y    W+
Sbjct: 182 YTDAKWD 188


>AT1G68730.1 | Symbols:  | Zim17-type zinc finger protein |
           chr1:25810321-25811128 REVERSE LENGTH=170
          Length = 170

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 43/73 (58%)

Query: 170 NESGTGNISTFPWSLFTKSPRRRMLVAFTCTICGQRTTRAINPHAYTDGTVFVQCCGCNA 229
           N     N S    S+  K PRR + V FTC  CG+RT R IN HAY  G VFVQC GC  
Sbjct: 83  NPDEESNDSAEVASIDIKLPRRSLQVEFTCNSCGERTKRLINRHAYEKGLVFVQCAGCLK 142

Query: 230 YHKLVDHLNLFQE 242
           +HKLVD+L L  E
Sbjct: 143 HHKLVDNLGLIVE 155