Miyakogusa Predicted Gene

Lj5g3v2256170.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2256170.2 tr|G7ZYS2|G7ZYS2_MEDTR Coatomer subunit delta
OS=Medicago truncatula GN=MTR_077s0036 PE=4
SV=1,92.53,0,Adap_comp_sub,Clathrin adaptor, mu subunit, C-terminal;
COATOMER SUBUNIT DELTA,NULL; MHD,Clathrin ad,CUFF.57076.2
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05010.2 | Symbols:  | clathrin adaptor complexes medium subu...   277   3e-75
AT5G05010.1 | Symbols:  | clathrin adaptor complexes medium subu...   277   3e-75

>AT5G05010.2 | Symbols:  | clathrin adaptor complexes medium subunit
           family protein | chr5:1477137-1479872 FORWARD LENGTH=527
          Length = 527

 Score =  277 bits (708), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 150/177 (84%), Gaps = 4/177 (2%)

Query: 1   MNKELFANENKLGLKDPNRPFPTGQASDAGGVGLLKWRMQSTDESMVPLTINCWPSSSGN 60
           +N+++F NEN LGLK P++PFPTGQ  D  GVGLL+WRMQ  DESMVPLTINCWPS SGN
Sbjct: 344 INRDMFNNENILGLKRPDQPFPTGQGGD--GVGLLRWRMQRADESMVPLTINCWPSVSGN 401

Query: 61  ETYVSIEYEASSMFDLRNVVISVPLPALRDAPSVSQIDGEWRYDSRNSILEWSVILIDNS 120
           ETYVS+EYEASSMFDL NV+ISVPLPALR+APSV Q DGEWRYD RNS+LEWS++LIDNS
Sbjct: 402 ETYVSLEYEASSMFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNS 461

Query: 121 NRSGSMEFVVPQADSSAFFPISVRFMATDTFSELKVTNILPQKGGN--PPKFSQRTQ 175
           NRSGSMEFVVP  DSS FFPISV+F AT T+S LKVT ++P +GG    P+F QRTQ
Sbjct: 462 NRSGSMEFVVPPVDSSVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQ 518


>AT5G05010.1 | Symbols:  | clathrin adaptor complexes medium subunit
           family protein | chr5:1477137-1479872 FORWARD LENGTH=527
          Length = 527

 Score =  277 bits (708), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 150/177 (84%), Gaps = 4/177 (2%)

Query: 1   MNKELFANENKLGLKDPNRPFPTGQASDAGGVGLLKWRMQSTDESMVPLTINCWPSSSGN 60
           +N+++F NEN LGLK P++PFPTGQ  D  GVGLL+WRMQ  DESMVPLTINCWPS SGN
Sbjct: 344 INRDMFNNENILGLKRPDQPFPTGQGGD--GVGLLRWRMQRADESMVPLTINCWPSVSGN 401

Query: 61  ETYVSIEYEASSMFDLRNVVISVPLPALRDAPSVSQIDGEWRYDSRNSILEWSVILIDNS 120
           ETYVS+EYEASSMFDL NV+ISVPLPALR+APSV Q DGEWRYD RNS+LEWS++LIDNS
Sbjct: 402 ETYVSLEYEASSMFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNS 461

Query: 121 NRSGSMEFVVPQADSSAFFPISVRFMATDTFSELKVTNILPQKGGN--PPKFSQRTQ 175
           NRSGSMEFVVP  DSS FFPISV+F AT T+S LKVT ++P +GG    P+F QRTQ
Sbjct: 462 NRSGSMEFVVPPVDSSVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQ 518