Miyakogusa Predicted Gene

Lj5g3v2245940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2245940.1 Non Chatacterized Hit- tr|A0ZMC6|A0ZMC6_NODSP
Putative uncharacterized protein OS=Nodularia
spumigen,31.86,2e-18,DUF3353,Protein of unknown function DUF3353;
seg,NULL,CUFF.57067.1
         (291 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20920.1 | Symbols:  | Protein of unknown function (DUF3353) ...   300   1e-81
AT5G23040.1 | Symbols: CDF1 | Protein of unknown function (DUF33...    59   5e-09

>AT2G20920.1 | Symbols:  | Protein of unknown function (DUF3353) |
           chr2:8998728-8999789 FORWARD LENGTH=287
          Length = 287

 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/292 (57%), Positives = 196/292 (67%), Gaps = 10/292 (3%)

Query: 2   AATLSVRPDRLSAGSSFXXXXXXXXXXXXXGKPAVIEPWRGAPLQTHCRRAFTRIVPPVQ 61
           AA  + RP+RLS+ SS                    + WR A +    RR   R  PP +
Sbjct: 4   AALSAARPNRLSSASSDVPLHPLYLPTKLQFPSRKTQLWRSAAILLPTRR---RCAPP-R 59

Query: 62  AASRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNAILANCKDDXXXXXXXXXXYDM 121
           A+SRADDS PF+MSVE ALK+LGVSEGASFD+ILRAK +ILA+ KDD          YDM
Sbjct: 60  ASSRADDSPPFDMSVETALKVLGVSEGASFDEILRAKKSILASRKDDPNAISQAEAAYDM 119

Query: 122 LLMQSLTQRRAGKVVNSSVRYADVKRVKPAATGSMPPWLKSTMXXXXXXXXXXXXGDLGL 181
           LLMQSL QRRAGKVV++++RYADVK   P  T ++  W+K+               DLG+
Sbjct: 120 LLMQSLNQRRAGKVVSNNIRYADVKSSNPLGTSTVTQWMKNP----PVSVDMPSTSDLGI 175

Query: 182 QAGVYGALMGLTYFSGVSPPSSA--YGGADVPGLILAGSFGASLYFMTKKNVKLGKAVGI 239
           QAGVYGA+M LTY +G S  SS   Y GADVPGLILA SFGASLYFMTKK VKLGKA  +
Sbjct: 176 QAGVYGAMMVLTYVNGSSFESSGMPYAGADVPGLILASSFGASLYFMTKKKVKLGKAAAL 235

Query: 240 TIGGLIVGAVVGSAVENWLQVDIVPFLGIHSPAAVVGEIIIISQFLVSLYLR 291
           T GGL+ GAVVGSA+E WL VD+VPFLG+HSPAAVV E I+ SQFLVSL LR
Sbjct: 236 TAGGLVAGAVVGSAIETWLHVDVVPFLGLHSPAAVVSEFIVFSQFLVSLCLR 287


>AT5G23040.1 | Symbols: CDF1 | Protein of unknown function (DUF3353)
           | chr5:7729465-7730930 REVERSE LENGTH=258
          Length = 258

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 21/179 (11%)

Query: 76  VENALKLLGVSEGASFDDILRAKNAILANCKDDXXXXXXXXXXYDMLLMQSLTQRRAGKV 135
           V +  K LGVS  AS ++I  ++N +L                ++ LLM S  +R+  K+
Sbjct: 66  VWDPYKRLGVSPYASEEEIWASRNFLLQQYAGHERSEESIEGAFEKLLMSSFIRRKKTKI 125

Query: 136 VNSSVRYADVKRVKPAATGSMPPWLKSTMXXXXXXXXXXXXGDLGLQAGVYGALMGLTYF 195
              +++    K+V+ +     PPWLK+ +             ++     ++  L    + 
Sbjct: 126 ---NLKSKLKKKVEES-----PPWLKALLDFV----------EMPPMDTIFRRLFLFAFM 167

Query: 196 SGVSPPSSAYGGADVPGLILAGSFGASLYFMTKKNVKLGKAVGITIGGLIVGAVVGSAV 254
            G S  +SA GG   P   +A S  A +YF+ +K   LG+A  I IG L+ G   GS +
Sbjct: 168 GGWSIMNSAEGG---PAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALVAGWFCGSLI 223