Miyakogusa Predicted Gene
- Lj5g3v2244610.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2244610.1 Non Chatacterized Hit- tr|I1HWI3|I1HWI3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,44.58,0.0000000001,HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; ACT-like,NULL; no
description,Heli,CUFF.57039.1
(501 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b... 356 3e-98
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 124 1e-28
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 124 1e-28
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 124 1e-28
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL... 124 2e-28
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 87 2e-17
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 86 4e-17
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 86 5e-17
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 86 5e-17
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 86 7e-17
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 81 1e-15
AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623... 80 4e-15
AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA-... 80 5e-15
AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 80 5e-15
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 79 9e-15
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ... 77 2e-14
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 77 2e-14
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 77 2e-14
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 77 2e-14
AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 | chr5:2623... 75 9e-14
AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 73 5e-13
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 8e-13
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 9e-13
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 72 1e-12
AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 1e-12
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHL... 71 1e-12
AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 1e-12
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 1e-12
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 1e-12
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 1e-12
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 70 3e-12
AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 70 3e-12
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 69 7e-12
AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-b... 67 3e-11
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 1e-10
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 2e-10
AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 | ch... 64 2e-10
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 3e-10
AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 4e-10
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 7e-10
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 2e-09
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-... 61 2e-09
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 7e-09
AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 1e-08
AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 1e-08
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 58 2e-08
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 58 2e-08
AT1G06170.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 2e-08
AT1G06170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 2e-08
AT1G72210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 3e-08
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 4e-08
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 57 4e-08
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 57 4e-08
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 57 4e-08
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 56 6e-08
AT2G46810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 9e-08
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 55 9e-08
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 55 9e-08
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 55 1e-07
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 55 1e-07
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 1e-07
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 54 2e-07
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 3e-07
AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-... 54 3e-07
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 54 3e-07
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 4e-07
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loo... 53 5e-07
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 53 6e-07
AT1G22490.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 9e-07
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 52 9e-07
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DN... 51 1e-06
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 2e-06
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 5e-06
AT4G01460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 5e-06
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 49 6e-06
AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 | chr5:1894... 49 7e-06
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 7e-06
AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 8e-06
AT4G00480.1 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bH... 49 8e-06
AT4G00480.2 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bH... 49 1e-05
>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:7331721-7334077
FORWARD LENGTH=571
Length = 571
Score = 356 bits (913), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 230/495 (46%), Positives = 307/495 (62%), Gaps = 51/495 (10%)
Query: 1 MIPHPRTKTCDLLSQLTTSIPTDSGIHAQTLLTNQPNWLNYSNSLDPNTLEETINGTQVL 60
M HPRTK+C+ LS L SIP DSGI+A+TLLTNQ WL S S +P+ ++ETI T+VL
Sbjct: 66 MFHHPRTKSCEFLSHLPASIPLDSGIYAETLLTNQTGWL--SESSEPSFMQETI-CTRVL 122
Query: 61 IPVPGGLVELFVTKQVPEDHHVIDFVTAQCIVLMDQEAVNLSASINIDVNSMSNMQSXXX 120
IP+PGGLVELF T+ V ED +V+DFV C +LMD S +IN+ V +
Sbjct: 123 IPIPGGLVELFATRHVAEDQNVVDFVMGHCNMLMDD-----SVTINMMVADEVESKPYGM 177
Query: 121 XXXXXXXXXXXXXXHIHFQPSETSSLPHDISMNRIGLCNSPLNFM-QHFNYD-QNNRMKN 178
++ S +DIS ++I LNF+ Q +Y+ Q+ +MK+
Sbjct: 178 LSGDIQQKGSKEEDMMNLPSS------YDISADQI-----RLNFLPQMSDYETQHLKMKS 226
Query: 179 NTFSEEYQGSFLYDKQGNL----LNSKAEEEHDTY----QKCLMSTDTQYVDPLDNKEKQ 230
+ +Q + GN +N E D + L+ + Q V+ D E
Sbjct: 227 DY---HHQALGYLPENGNKEMMGMNPFNTVEEDGIPVIGEPSLLVNEQQVVNDKDMNEN- 282
Query: 231 EHKDLMKHVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYN 290
GR DS SDCSDQ ++EDD KY++++GKG+Q+KNL+AER+RRKKLNDRLY
Sbjct: 283 ----------GRVDSGSDCSDQIDDEDDPKYKKKSGKGSQAKNLMAERRRRKKLNDRLYA 332
Query: 291 LRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDI 350
LRSLVPRI+KLDRASILGDAI +VK+LQ + KELQDELEENS+T SN +P
Sbjct: 333 LRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETEDGSN-------RPQG 385
Query: 351 PKAEHGKNQNGFHVGAPGNGYVSKQKQE-DASATDKQTQQMEPQVEVALIDGNEYFVKVF 409
+ +G GFH G N V KQ+ D ++ + Q+MEPQV+VA +DG E+FVKV
Sbjct: 386 GMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDGREFFVKVI 445
Query: 410 CEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSEMVEAEDVRDSLLEL 469
CE++PGGF +LMEAL++LG++V +A T + LVSNVFKVEK D+EMV+AE VR+SLLE+
Sbjct: 446 CEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEMVQAEHVRNSLLEI 505
Query: 470 TRNRTRGWSHEMTAT 484
TRN +RGW + AT
Sbjct: 506 TRNTSRGWQDDQMAT 520
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 20/182 (10%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
+KNL+AER+RRKKLNDRLY LRS+VP+ISK+DRASILGDAI+++K+L +++ +L +ELE
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVS-KQKQEDASATDKQTQQ 389
P + FH P +S + K+E ++ +
Sbjct: 366 T-------------------PPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKG 406
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
+ +VEV L +G + +FC RPG M+AL+ LG+DV A ++ G +VF+
Sbjct: 407 QQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRA 466
Query: 450 EK 451
E+
Sbjct: 467 EQ 468
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 20/182 (10%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
+KNL+AER+RRKKLNDRLY LRS+VP+ISK+DRASILGDAI+++K+L +++ +L +ELE
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVS-KQKQEDASATDKQTQQ 389
P + FH P +S + K+E ++ +
Sbjct: 366 T-------------------PPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKG 406
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
+ +VEV L +G + +FC RPG M+AL+ LG+DV A ++ G +VF+
Sbjct: 407 QQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRA 466
Query: 450 EK 451
E+
Sbjct: 467 EQ 468
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 20/182 (10%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
+KNL+AER+RRKKLNDRLY LRS+VP+ISK+DRASILGDAI+++K+L +++ +L +ELE
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVS-KQKQEDASATDKQTQQ 389
P + FH P +S + K+E ++ +
Sbjct: 366 T-------------------PPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKG 406
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
+ +VEV L +G + +FC RPG M+AL+ LG+DV A ++ G +VF+
Sbjct: 407 QQARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRA 466
Query: 450 EK 451
E+
Sbjct: 467 EQ 468
>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384758-4386392
FORWARD LENGTH=450
Length = 450
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 112/201 (55%), Gaps = 27/201 (13%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
+KNL+AER+RRKKLNDRLY LRS+VP+ISK+DRASILGDAI+++K+L +++ +L ELE
Sbjct: 266 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELES 325
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQED--ASATDKQTQ 388
+ + H P +S + +E+ S++ +
Sbjct: 326 TPPSSSS------------------------LHPLTPTPQTLSYRVKEELCPSSSLPSPK 361
Query: 389 QMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFK 448
+P+VEV L +G + +FC RPG M AL+ LG+DV A ++ G +VF+
Sbjct: 362 GQQPRVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFR 421
Query: 449 VEK-KDSEMVEAEDVRDSLLE 468
E+ ++ V E ++ LL+
Sbjct: 422 AEQCQEDHDVLPEQIKAVLLD 442
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 100/183 (54%), Gaps = 29/183 (15%)
Query: 260 KYRRR-----NGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFV 314
K R+R NG+ ++ AER+RR+KLN R Y+LR++VP +SK+D+AS+LGDAI ++
Sbjct: 398 KPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYI 457
Query: 315 KDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSK 374
+L+ ++++ + + EE I K G ++ G + G G S+
Sbjct: 458 NELKSKLQQAESDKEE-------------------IQKKLDGMSKEGNN----GKGCGSR 494
Query: 375 QKQEDASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHA 434
K+ +S D +E +++V +I G + ++V C + + MEAL L ++V HA
Sbjct: 495 AKERKSSNQDSTASSIEMEIDVKII-GWDVMIRVQCGKKDHPGARFMEALKELDLEVNHA 553
Query: 435 TVT 437
+++
Sbjct: 554 SLS 556
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154872 FORWARD
LENGTH=247
Length = 247
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 254 EEEDDGKYRRRNGKGNQS----KNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGD 309
EE G Y + G S KN+V+ER RR+KLN RL+ LRS+VP I+K+D+ASI+ D
Sbjct: 32 EEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKD 91
Query: 310 AIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGN 369
AI +++ LQ + K+L+ E+ E T PK+ +++ F
Sbjct: 92 AISYIEGLQYEEKKLEAEIRELEST----------------PKSSLSFSKD-FDRDLLVP 134
Query: 370 GYVSKQKQEDASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGM 429
K KQ D+ ++ + +E ++V + V V C R KL E +L +
Sbjct: 135 VTSKKMKQLDSGSSTSLIEVLE--LKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNL 192
Query: 430 DVVHATVTSHKGLVSNVFKVEKKDSE 455
++ + +TS G++ + +E + E
Sbjct: 193 KILTSNLTSFSGMIFHTVFIEADEEE 218
>AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154801 FORWARD
LENGTH=264
Length = 264
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 23/201 (11%)
Query: 254 EEEDDGKYRRRNGKGNQS----KNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGD 309
EE G Y + G S KN+V+ER RR+KLN RL+ LRS+VP I+K+D+ASI+ D
Sbjct: 33 EEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKD 92
Query: 310 AIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGN 369
AI +++ LQ + K+L+ E+ E T S + + + + P
Sbjct: 93 AISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFDR---------------DLLVPVT 137
Query: 370 GYVSKQKQEDASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGM 429
K KQ D+ ++ + +E ++V + V V C R KL E +L +
Sbjct: 138 S--KKMKQLDSGSSTSLIEVLE--LKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNL 193
Query: 430 DVVHATVTSHKGLVSNVFKVE 450
++ + +TS G++ + +E
Sbjct: 194 KILTSNLTSFSGMIFHTVFIE 214
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23153293 FORWARD
LENGTH=226
Length = 226
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 23/201 (11%)
Query: 254 EEEDDGKYRRRNGKGNQS----KNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGD 309
EE G Y + G S KN+V+ER RR+KLN RL+ LRS+VP I+K+D+ASI+ D
Sbjct: 33 EEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKD 92
Query: 310 AIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGN 369
AI +++ LQ + K+L+ E+ E T S + + + + P
Sbjct: 93 AISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFDR---------------DLLVPVT 137
Query: 370 GYVSKQKQEDASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGM 429
K KQ D+ ++ + +E ++V + V V C R KL E +L +
Sbjct: 138 S--KKMKQLDSGSSTSLIEVLE--LKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNL 193
Query: 430 DVVHATVTSHKGLVSNVFKVE 450
++ + +TS G++ + +E
Sbjct: 194 KILTSNLTSFSGMIFHTVFIE 214
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154556 FORWARD
LENGTH=219
Length = 219
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 23/201 (11%)
Query: 254 EEEDDGKYRRRNGKGNQS----KNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGD 309
EE G Y + G S KN+V+ER RR+KLN RL+ LRS+VP I+K+D+ASI+ D
Sbjct: 33 EEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKD 92
Query: 310 AIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGN 369
AI +++ LQ + K+L+ E+ E T PK+ +++ F
Sbjct: 93 AISYIEGLQYEEKKLEAEIRELEST----------------PKSSLSFSKD-FDRDLLVP 135
Query: 370 GYVSKQKQEDASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGM 429
K KQ D+ ++ + +E ++V + V V C R KL E +L +
Sbjct: 136 VTSKKMKQLDSGSSTSLIEVLE--LKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNL 193
Query: 430 DVVHATVTSHKGLVSNVFKVE 450
++ + +TS G++ + +E
Sbjct: 194 KILTSNLTSFSGMIFHTVFIE 214
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 5/90 (5%)
Query: 257 DDGKYRRR-----NGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAI 311
D+ + R+R NG+ ++ AER+RR+KLN R Y LRS+VP ISK+D+AS+LGDAI
Sbjct: 375 DEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAI 434
Query: 312 EFVKDLQKQVKELQDELEENSDTGAESNCI 341
++K+LQ++VK ++DE + +ESN I
Sbjct: 435 SYIKELQEKVKIMEDERVGTDKSLSESNTI 464
>AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 |
chr5:26237137-26238904 FORWARD LENGTH=351
Length = 351
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 41/222 (18%)
Query: 260 KYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
K + + +G SKNL+AER+RRK+LNDRL LRS+VP+ISK+DR SILGDAI+++K+L
Sbjct: 166 KKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLD 225
Query: 320 QVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQED 379
++ +LQDE + E G + N H G+ +D
Sbjct: 226 KINKLQDE------------------------EQELGNSNNSHHSKLFGD-------LKD 254
Query: 380 ASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSH 439
+A + + P+ E+ D + V + C +PG + L TLG+++ ++
Sbjct: 255 LNANEPLVRN-SPKFEIDRRDEDTR-VDICCSPKPGLLLSTVNTLETLGLEIEQCVISCF 312
Query: 440 KGL---VSNVFKVEKKDSEMVEAEDVRDSLLELTRNRTRGWS 478
S E++D + +ED++ +L RN G S
Sbjct: 313 SDFSLQASCSEGAEQRD--FITSEDIKQALF---RNAGYGGS 349
>AT4G21330.1 | Symbols: DYT1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:11349922-11350694
FORWARD LENGTH=207
Length = 207
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 31/205 (15%)
Query: 270 QSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELE 329
+S NL AER+RR+KL+ RL LRS VP ++ + +ASI+ DAI ++ +LQ VK L +
Sbjct: 30 KSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFH 89
Query: 330 ENSDTGAESNCINGNNGQPDI-PKAEHGK-NQNGFHVGAPGNGYVSKQKQEDASATDKQT 387
E + E I+ P I P+ E N+ +G
Sbjct: 90 EMEEAPPE---IDEEQTDPMIKPEVETSDLNEEMKKLG---------------------- 124
Query: 388 QQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVF 447
+E V++ I ++++K+ E R G F K ME + LG +++ ++T+ G + +
Sbjct: 125 --IEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAI--LI 180
Query: 448 KVEKKDSEMVEAEDVRDSLLELTRN 472
+ E+ + E +D LLE+ R+
Sbjct: 181 SASVQTQELCDVEQTKDFLLEVMRS 205
>AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3506463-3508752 FORWARD
LENGTH=441
Length = 441
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 270 QSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELE 329
+SKNL +ERKRR+++N +Y LR++VP+I+KL++ I DA++++ +L + ++L+DEL+
Sbjct: 262 KSKNLHSERKRRERINQAMYGLRAVVPKITKLNKIGIFSDAVDYINELLVEKQKLEDELK 321
Query: 330 ENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQ 389
++ + + D P+AE +S ++K+ ++
Sbjct: 322 GINEMECKEIAAEEQSAIAD-PEAERV-----------------------SSKSNKRVKK 357
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
E ++EV ++ ++V EH+ GF +L+EA++ ++++ T V V V
Sbjct: 358 NEVKIEVHETGERDFLIRVVQEHKQDGFKRLIEAVDLCELEIIDVNFTRLDLTVMTVLNV 417
Query: 450 EKKDSEMVEAEDVRDSLLEL 469
K + + + +RD LL++
Sbjct: 418 -KANKDGIACGILRDLLLKM 436
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 6 RTKTCDLLSQLTTSIPTDSGIHAQTLLTNQPNWLNYSNSLDPNTLEETINGTQVLIPVPG 65
RT C+ LS+ +P GIH + +++ P WL S S + + T+VL+PV
Sbjct: 84 RTLACEALSRFPLFMPLYPGIHGEVVMSKSPKWLVNSGS------KMEMFSTRVLVPVSD 137
Query: 66 GLVELFVTKQVPEDHHVIDFVTAQCIVLMD 95
GLVELF P D ++ + ++C +
Sbjct: 138 GLVELFAFDMRPFDESMVHLIMSRCTTFFE 167
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 35/188 (18%)
Query: 256 EDDGKYRRR-----NGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDA 310
E + K R+R NG+ ++ AER+RR+KLN R Y+LR++VP +SK+D+AS+LGDA
Sbjct: 395 EPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDA 454
Query: 311 IEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNG 370
I ++ +L+ ++++ + + EE Q D+ E G
Sbjct: 455 ISYISELKSKLQKAESDKEELQK-------------QIDVMNKEAGN------------- 488
Query: 371 YVSKQKQEDASATDKQTQQM-EPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGM 429
+K +D ++++ + E +V+V +I G + +++ C R K MEAL L +
Sbjct: 489 --AKSSVKDRKCLNQESSVLIEMEVDVKII-GWDAMIRIQCSKRNHPGAKFMEALKELDL 545
Query: 430 DVVHATVT 437
+V HA+++
Sbjct: 546 EVNHASLS 553
>AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,
ATFIT1 | FER-like regulator of iron uptake |
chr2:12004713-12005908 FORWARD LENGTH=318
Length = 318
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 26/164 (15%)
Query: 264 RNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKE 323
R K ++S+ L++ER+RR ++ D+LY LRSLVP I+K+D+ASI+GDA+ +V++LQ Q K+
Sbjct: 123 RKTKTDRSRTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKK 182
Query: 324 LQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASAT 383
L+ ++ G E++ + G+ AP QK +
Sbjct: 183 LKSDI-----AGLEASL----------------NSTGGYQEHAP-----DAQKTQPFRGI 216
Query: 384 DKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTL 427
+ + Q++V ++ ++V++ C G L ++L +L
Sbjct: 217 NPPASKKIIQMDVIQVEEKGFYVRLVCNKGEGVAPSLYKSLESL 260
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDT 334
++E+KRR+KLN+R LRS++P ISK+D+ SIL D IE+++DLQK+V+EL+ E++DT
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELES-CRESADT 466
Query: 335 GAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASA-----TDKQTQQ 389
E+ +PD + A N SK+K D + D
Sbjct: 467 --ETRITMMKRKKPDDEEER-----------ASANCMNSKRKGSDVNVGEDEPADIGYAG 513
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
+ + ++ + GNE +++ C R G ++M+ ++ L +D ++ GL+
Sbjct: 514 LTDNLRISSL-GNEVVIELRCAWREGILLEIMDVISDLNLDSHSVQSSTGDGLLCLTVNC 572
Query: 450 EKKDSEMVEAEDVRDSL 466
+ K +++ ++++L
Sbjct: 573 KHKGTKIATTGMIQEAL 589
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDT 334
++E+KRR+KLN+R LRS++P ISK+D+ SIL D IE+++DLQK+V+EL+ E++DT
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELES-CRESADT 466
Query: 335 GAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASA-----TDKQTQQ 389
E+ +PD + A N SK+K D + D
Sbjct: 467 --ETRITMMKRKKPDDEEER-----------ASANCMNSKRKGSDVNVGEDEPADIGYAG 513
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
+ + ++ + GNE +++ C R G ++M+ ++ L +D ++ GL+
Sbjct: 514 LTDNLRISSL-GNEVVIELRCAWREGILLEIMDVISDLNLDSHSVQSSTGDGLLCLTVNC 572
Query: 450 EKKDSEMVEAEDVRDSL 466
+ K +++ ++++L
Sbjct: 573 KHKGTKIATTGMIQEAL 589
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDT 334
++E+KRR+KLN+R LRS++P ISK+D+ SIL D IE+++DLQK+V+EL+ E++DT
Sbjct: 408 LSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELES-CRESADT 466
Query: 335 GAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASA-----TDKQTQQ 389
E+ +PD + A N SK+K D + D
Sbjct: 467 --ETRITMMKRKKPDDEEER-----------ASANCMNSKRKGSDVNVGEDEPADIGYAG 513
Query: 390 MEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKV 449
+ + ++ + GNE +++ C R G ++M+ ++ L +D ++ GL+
Sbjct: 514 LTDNLRISSL-GNEVVIELRCAWREGILLEIMDVISDLNLDSHSVQSSTGDGLLCLTVNC 572
Query: 450 EKKDSEMVEAEDVRDSL 466
+ K +++ ++++L
Sbjct: 573 KHKGTKIATTGMIQEAL 589
>AT5G65640.2 | Symbols: bHLH093 | beta HLH protein 93 |
chr5:26237137-26238635 FORWARD LENGTH=290
Length = 290
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 5/96 (5%)
Query: 235 LMKHVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSL 294
LM+ +S S+ C + K + + +G SKNL+AER+RRK+LNDRL LRS+
Sbjct: 146 LMESDQSKSFSVGYCGGET-----NKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSI 200
Query: 295 VPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
VP+ISK+DR SILGDAI+++K+L ++ +LQDE +E
Sbjct: 201 VPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQE 236
>AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=254
Length = 254
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
SKN+V+ER RR+KLN RL+ LRS+VP ISKLD+AS++ D+I+++++L Q K L+ E+ E
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHV--GAPGNGYVSKQKQEDASATDKQTQ 388
+ + + P ++ N H+ + N SK+ ++ +T Q
Sbjct: 113 ----------LESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHY 162
Query: 389 QMEP-QVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSN-- 445
+E +++V + V + C + +L + L +L ++++ +S +S
Sbjct: 163 PIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTL 222
Query: 446 VFKVEKKDSEMVEAE 460
+ ++++S VEA+
Sbjct: 223 FLQADEEESSAVEAK 237
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=225
Length = 225
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 49/60 (81%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
SKN+V+ER RR+KLN RL+ LRS+VP ISKLD+AS++ D+I+++++L Q K L+ E+ E
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
>AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645505 FORWARD
LENGTH=263
Length = 263
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 49/60 (81%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
SKN+V+ER RR+KLN RL+ LRS+VP ISKLD+AS++ D+I+++++L Q K L+ E+ E
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 264 RNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKE 323
R+ GN + V E+KRR+KLN+R LR ++P I+K+D+ SIL D IE++++L+++V+E
Sbjct: 436 RDETGNHA---VLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQE 492
Query: 324 LQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNG-YVSKQKQEDASA 382
L+ E++DT D + N GNG VS +A
Sbjct: 493 LES-CRESTDTETRGTMTMKRKKPCDAGERTSANCAN----NETGNGKKVSVNNVGEAEP 547
Query: 383 TDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGL 442
D + + + GNE +++ C R G ++M+ ++ L +D ++ GL
Sbjct: 548 ADTGFTGLTDNLRIGSF-GNEVVIELRCAWREGVLLEIMDVISDLHLDSHSVQSSTGDGL 606
Query: 443 VSNVFKVEKKDSEMVEAEDVRDSL 466
+ + K S++ ++++L
Sbjct: 607 LCLTVNCKHKGSKIATPGMIKEAL 630
>AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:3341357-3342877 FORWARD
LENGTH=315
Length = 315
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 58/71 (81%), Gaps = 2/71 (2%)
Query: 262 RRRNGK--GNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
+R N K G SKNL+AER+RRK+LNDRL LRS+VP+I+K+DR SILGDAI+++K+L
Sbjct: 139 KRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLD 198
Query: 320 QVKELQDELEE 330
++ +LQ++ +E
Sbjct: 199 KINKLQEDEQE 209
>AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182067-6186261
FORWARD LENGTH=518
Length = 518
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 50/190 (26%)
Query: 273 NLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENS 332
++VAER+RR+KLN++ LRS+VP ++K+D+ SILGD I +V L+K+V EL
Sbjct: 364 HVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHEL-------- 415
Query: 333 DTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQMEP 392
+N H +Q+ + ++T +
Sbjct: 416 --------------------------ENTHH----------EQQHKRTRTCKRKTSE--- 436
Query: 393 QVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMD--VVHATVTSHKGLVSNVFKVE 450
+VEV++I+ N+ +++ CE+R G +++ L+ LG++ VH +V H KV
Sbjct: 437 EVEVSIIE-NDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVNDHDFEAEIRAKVR 495
Query: 451 KKDSEMVEAE 460
K + + E +
Sbjct: 496 GKKASIAEVK 505
>AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645168 FORWARD
LENGTH=184
Length = 184
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 49/60 (81%)
Query: 271 SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
SKN+V+ER RR+KLN RL+ LRS+VP ISKLD+AS++ D+I+++++L Q K L+ E+ E
Sbjct: 53 SKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 247 SDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASI 306
+D S N G+ R NG+ ++ AER+RR+KLN R Y LRS+VP ISK+D+AS+
Sbjct: 409 ADESGNNRPRKRGR-RPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASL 467
Query: 307 LGDAIEFVKDLQKQVKELQDELE 329
LGDA+ ++ +L ++K ++ E E
Sbjct: 468 LGDAVSYINELHAKLKVMEAERE 490
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 247 SDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASI 306
+D S N G+ R NG+ ++ AER+RR+KLN R Y LRS+VP ISK+D+AS+
Sbjct: 409 ADESGNNRPRKRGR-RPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASL 467
Query: 307 LGDAIEFVKDLQKQVKELQDELE 329
LGDA+ ++ +L ++K ++ E E
Sbjct: 468 LGDAVSYINELHAKLKVMEAERE 490
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 247 SDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASI 306
+D S N G+ R NG+ ++ AER+RR+KLN R Y LRS+VP ISK+D+AS+
Sbjct: 409 ADESGNNRPRKRGR-RPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASL 467
Query: 307 LGDAIEFVKDLQKQVKELQDELE 329
LGDA+ ++ +L ++K ++ E E
Sbjct: 468 LGDAVSYINELHAKLKVMEAERE 490
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 11/92 (11%)
Query: 257 DDGKYRRR-----NGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAI 311
D+ K R+R NG+ ++ AER+RR+KLN R Y LR++VP ISK+D+AS+L DAI
Sbjct: 300 DEQKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAI 359
Query: 312 EFVKDLQKQV------KELQDELEENSDTGAE 337
++ D+QK++ K++ E N T AE
Sbjct: 360 TYITDMQKKIRVYETEKQIMKRRESNQITPAE 391
>AT4G37850.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17796362-17797647 REVERSE
LENGTH=328
Length = 328
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 267 KGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQD 326
+ N +++AERKRR+KL R L +LVP + K+D+AS+LGDA++ +K LQ++V EL+
Sbjct: 147 QSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELE- 205
Query: 327 ELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQ 386
E+ + ES + + K N F +S D
Sbjct: 206 --EQKKERRLESMVLVKKS------KLILDDNNQSF----------------SSSCEDGF 241
Query: 387 TQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNV 446
+ P++EV D + +K+ CE + G K+M + L + + +++V + G ++
Sbjct: 242 SDLDLPEIEVRFSD-EDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNF-GPTLDI 299
Query: 447 FKVEKKDSEM 456
+ KK+S+
Sbjct: 300 TIIAKKESDF 309
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 153/355 (43%), Gaps = 54/355 (15%)
Query: 12 LLSQLTTSIPTDSGIHAQTLLTNQPNWLNYSNSLDPNTLEETING------TQVLIPVPG 65
L +T S +G+ + T W++ S+ L + E G T IP
Sbjct: 168 FLVSMTQSFACGAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSAN 227
Query: 66 GLVELFVTKQVPEDHHVIDFVTAQCIVLMDQEAVNLSA-SINIDVNSMSN---------- 114
G+VE+ T+ + + +I+ V + + D A +LS + N+D + N
Sbjct: 228 GVVEVGSTEPIRQSSDLINKV--RILFNFDGGAGDLSGLNWNLDPDQGENDPSMWINDPI 285
Query: 115 --MQSXXXXXXXXXXXXXXXXXHIHFQPSETSSLPHDISMNRIGLCNSPLNFMQHFNYDQ 172
S I F+ +S++ + +++ SP++ + Q
Sbjct: 286 GTPGSNEPGNGAPSSSSQLFSKSIQFENGSSSTITENPNLDP---TPSPVH-----SQTQ 337
Query: 173 NNRMKNNTFSEEY-----QGSFLYDKQGNLLNSKAEEEHDTYQK--CLMSTDTQYVDPLD 225
N + NNTFS E + + + G +LN E + + S TQ+ +
Sbjct: 338 NPKF-NNTFSRELNFSTSSSTLVKPRSGEILNFGDEGKRSSGNPDPSSYSGQTQF----E 392
Query: 226 NKEKQE---HKDLMKHVVGRSDSMSDCSDQNEE-------EDDGKYRRR---NGKGNQSK 272
NK K+ ++D + ++ SD SD E K R R NG+
Sbjct: 393 NKRKRSMVLNEDKVLSFGDKTAGESDHSDLEASVVKEVAVEKRPKKRGRKPANGREEPLN 452
Query: 273 NLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDE 327
++ AER+RR+KLN R Y LR++VP +SK+D+AS+LGDAI ++ +L+ +V + + E
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESE 507
>AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr3:8715525-8717772
REVERSE LENGTH=414
Length = 414
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 274 LVAERKRRKKLNDRLYNLRSLVP--RISKLDRASILGDAIEFVKDLQKQVKELQDELEEN 331
+ ER RRK++N+ L LRSL+P + + D+ASI+G AIEFV++L++ ++ L+ +
Sbjct: 200 IAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRR 259
Query: 332 --SDTGAESNCIN----------GNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQED 379
+TG + N QP I G G G + ++ E+
Sbjct: 260 ILGETGRDMTTTTTSSSSPITTVANQAQPLII--------TGNVTELEGGGGLREETAEN 311
Query: 380 ASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSH 439
S VEV L+ G + +K+ RPG K + AL L + ++H +T+
Sbjct: 312 KSCL--------ADVEVKLL-GFDAMIKILSRRRPGQLIKTIAALEDLHLSILHTNITTM 362
Query: 440 KGLVSNVFKVEKKDSEMVEAEDVRDSLLEL 469
+ V F V+ AED+ S+ ++
Sbjct: 363 EQTVLYSFNVKITSETRFTAEDIASSIQQI 392
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=305
Length = 305
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 31/175 (17%)
Query: 266 GKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQ 325
+ N +++AERKRR+KL R L +L+P + K+D+AS+LGDAI+ +K LQ+ VKE +
Sbjct: 120 SQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYE 179
Query: 326 DELE----ENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDAS 381
++ + E+ +S+ + N QP +
Sbjct: 180 EQKKEKTMESVVLVKKSSLVLDENHQP--------------------------SSSSSSD 213
Query: 382 ATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATV 436
+ P++EV + G + +K+ CE + G K+M + LG+ + ++ V
Sbjct: 214 GNRNSSSSNLPEIEVR-VSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=304
Length = 304
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 31/175 (17%)
Query: 266 GKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQ 325
+ N +++AERKRR+KL R L +L+P + K+D+AS+LGDAI+ +K LQ+ VKE +
Sbjct: 120 SQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYE 179
Query: 326 DELE----ENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDAS 381
++ + E+ +S+ + N QP +
Sbjct: 180 EQKKEKTMESVVLVKKSSLVLDENHQP--------------------------SSSSSSD 213
Query: 382 ATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATV 436
+ P++EV + G + +K+ CE + G K+M + LG+ + ++ V
Sbjct: 214 GNRNSSSSNLPEIEVR-VSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267
>AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 |
chr5:19002719-19004254 FORWARD LENGTH=511
Length = 511
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 37/195 (18%)
Query: 276 AERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTG 335
AER RR+KLN R Y LR++VP +SK+D+ S+L DA+ ++ +L+ + + ++ E
Sbjct: 347 AERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQF 406
Query: 336 AESNCING-NNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQMEPQV 394
E I G N P + K E +K ++ M ++
Sbjct: 407 NELKEIAGQRNAIPSVCKYE-----------------------------EKASEMM--KI 435
Query: 395 EVALIDGNEYFVKVFC--EHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKK 452
EV +++ ++ V+V +H PG +LM AL L ++V HA+++ L+ V K
Sbjct: 436 EVKIMESDDAMVRVESRKDHHPG--ARLMNALMDLELEVNHASISVMNDLMIQQANV-KM 492
Query: 453 DSEMVEAEDVRDSLL 467
+ + E++RD L+
Sbjct: 493 GLRIYKQEELRDLLM 507
>AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362230-363639 REVERSE
LENGTH=423
Length = 423
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 46/55 (83%)
Query: 276 AERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
AE++RR+KLN R Y LR++VP++S++D+AS+L DA+ +++ L+ ++ +L+ E+++
Sbjct: 253 AEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKK 307
>AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13303014-13304661 FORWARD
LENGTH=458
Length = 458
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 264 RNGKGN-QSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVK 322
R G+G+ +S+ ER+RR NDR ++L++L+P +K+DRASI+G+AI+++K+L + ++
Sbjct: 238 RKGRGSRKSRTSPTERERRVHFNDRFFDLKNLIPNPTKIDRASIVGEAIDYIKELLRTIE 297
Query: 323 ELQDELEE 330
E + +E+
Sbjct: 298 EFKMLVEK 305
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 255 EEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFV 314
EE G R+ + + NL AER+RR+K+N+++ L+ L+PR +K + S L DAIE+V
Sbjct: 243 EEARGSTSRKRSRTAEMHNL-AERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYV 301
Query: 315 KDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGY 371
K LQ Q++ G S +N N Q +P N+ + PG +
Sbjct: 302 KSLQSQIQ------------GMMSPMMNAGNTQQFMPHMAMDMNRPPPFIPFPGTSF 346
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 252 QNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAI 311
Q EE G R+ + + NL AER+RR+K+N+R+ L+ L+PR +K + S+L D I
Sbjct: 135 QGTEEARGSTSRKRSRAAEMHNL-AERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVI 193
Query: 312 EFVKDLQKQVKELQDEL 328
E+VK L+ Q+ + +
Sbjct: 194 EYVKSLEMQINQFMPHM 210
>AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:9684858-9686321
FORWARD LENGTH=320
Length = 320
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 274 LVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSD 333
++AERKRR+KLN+RL L +L+P + K D+A++L DAI+ +K LQ++VK+L++E
Sbjct: 134 VLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEE------ 187
Query: 334 TGAESNCINGNNGQPDI--PKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQME 391
+ Q I +++ + + + + D + KQT
Sbjct: 188 -----RVVTKKMDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTM--- 239
Query: 392 PQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHA 434
P +E A + + ++V CE G K++ +L ++VV++
Sbjct: 240 PMIE-ARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNS 281
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 245 SMSDCSDQNEEEDDGKYRRRNGKGNQS-KNLVAERKRRKKLNDRLYNLRSLVPRISK-LD 302
SMSD + +N ED +R R +G + +AER RR +++DR+ L+ LVP + K +
Sbjct: 166 SMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTN 225
Query: 303 RASILGDAIEFVKDLQKQVKELQDE 327
A +L +A+E+VK LQ+Q++EL +E
Sbjct: 226 TADMLEEAVEYVKVLQRQIQELTEE 250
>AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13296655-13298139 FORWARD
LENGTH=428
Length = 428
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 263 RRNGKGN-QSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQV 321
RR G+G ++K ER+RR LN+R L+ L+P SK DRASIL D I+++ +L+++V
Sbjct: 204 RRKGRGKRKNKPFTTERERRCHLNERYEALKLLIPSPSKGDRASILQDGIDYINELRRRV 263
Query: 322 KELQDELE 329
EL+ +E
Sbjct: 264 SELKYLVE 271
>AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13299807-13300302 FORWARD
LENGTH=129
Length = 129
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Query: 260 KYRRRNGKGNQ-SKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQ 318
+++ GKG++ S+ + ER+RR NDR ++L++L+P +K ASI+ D I ++ +LQ
Sbjct: 10 RFKAEEGKGSKKSRTFLTERERRALFNDRFFDLKNLIPNPTKGGEASIVQDGIVYINELQ 69
Query: 319 KQVKELQDELEENSDTGAESNCINGNNGQP--DIPKAEH--GKNQNGFH 363
+ V EL+ L E GA N I +N K EH KN+N F+
Sbjct: 70 RLVSELK-YLVEKKKCGARHNNIEVDNKNTIYGTSKIEHPFSKNKNTFN 117
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 36/146 (24%)
Query: 207 DTYQKCLMSTDTQYVDPLDNKEKQEHKDLMKHVVGRSDSMS------------------- 247
D + CL+S D+ K+++ K ++ VG +S+
Sbjct: 258 DNQKACLISEDSC------RKDQESEKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQD 311
Query: 248 -DCSDQNEEEDDGKYRR-----RNGKGNQSKNL-----VAERKRRKKLNDRLYNLRSLVP 296
DC ++ EE+ G R+ R G G++ ++ER+RR ++N+++ L+ L+P
Sbjct: 312 IDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIP 371
Query: 297 RISKLDRASILGDAIEFVKDLQKQVK 322
+K+D+AS+L +AIE++K LQ QV+
Sbjct: 372 NCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 36/146 (24%)
Query: 207 DTYQKCLMSTDTQYVDPLDNKEKQEHKDLMKHVVGRSDSMS------------------- 247
D + CL+S D+ K+++ K ++ VG +S+
Sbjct: 258 DNQKACLISEDSC------RKDQESEKAVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQD 311
Query: 248 -DCSDQNEEEDDGKYRR-----RNGKGNQSKNL-----VAERKRRKKLNDRLYNLRSLVP 296
DC ++ EE+ G R+ R G G++ ++ER+RR ++N+++ L+ L+P
Sbjct: 312 IDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIP 371
Query: 297 RISKLDRASILGDAIEFVKDLQKQVK 322
+K+D+AS+L +AIE++K LQ QV+
Sbjct: 372 NCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT1G06170.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1885146-1886564 REVERSE
LENGTH=420
Length = 420
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 251 DQNEEEDDGKYRRRNGKGNQSKNLV-AERKRRKKLNDRLYNLRSLVPRISKLDRASILGD 309
++N DDG R+ G+G++ + + ER+RR DR +L++L+P +K DRASI+G+
Sbjct: 196 EENNNLDDGLNRK--GRGSKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKNDRASIVGE 253
Query: 310 AIEFVKDLQKQVKELQDELEE 330
AI+++K+L + + E + +E+
Sbjct: 254 AIDYIKELLRTIDEFKLLVEK 274
>AT1G06170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1885146-1886564 REVERSE
LENGTH=420
Length = 420
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 251 DQNEEEDDGKYRRRNGKGNQSKNLV-AERKRRKKLNDRLYNLRSLVPRISKLDRASILGD 309
++N DDG R+ G+G++ + + ER+RR DR +L++L+P +K DRASI+G+
Sbjct: 196 EENNNLDDGLNRK--GRGSKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKNDRASIVGE 253
Query: 310 AIEFVKDLQKQVKELQDELEE 330
AI+++K+L + + E + +E+
Sbjct: 254 AIDYIKELLRTIDEFKLLVEK 274
>AT1G72210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:27180066-27182268 FORWARD
LENGTH=320
Length = 320
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 24/203 (11%)
Query: 274 LVAERKRRKKLNDRLYNLRSLVP--RISKLDRASILGDAIEFVKDLQKQVKELQDELEEN 331
+ ER RRK++N+ L LRSL+P + D+ASI+G AI ++K+L+ ++ ++ ++
Sbjct: 128 IAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHHLQSMEPPVKTA 187
Query: 332 S-DTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQM 390
+ DTGA G++ + G + F N S E +
Sbjct: 188 TEDTGA------GHDQTKTTSASSSGPFSDFFAFPQYSNRPTSAAAAEGMA--------- 232
Query: 391 EPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKG--LVSNVFK 448
++EV +++ + +K+ + RP KL+ ++ +L + ++H VT+ L S K
Sbjct: 233 --EIEVTMVESHAS-LKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSISVK 289
Query: 449 VEKKDSEMVEAEDVRDSLLELTR 471
VE + S++ ED+ ++ ++ R
Sbjct: 290 VE-EGSQLNTVEDIAAAVNQILR 311
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 253 NEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIE 312
EE D +R+ K ++ER+RR+K+N+ + L+ L+PR +K DR+S+L D IE
Sbjct: 264 TEEARDSTSSKRSRAAIMHK--LSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIE 321
Query: 313 FVKDLQKQVK 322
+VK LQ Q++
Sbjct: 322 YVKSLQSQIQ 331
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKEL 324
++ERKRR ++N+R+ L+ L+PR +K D+AS+L +AIE++K LQ Q++ +
Sbjct: 291 LSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 340
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKEL 324
++ERKRR ++N+R+ L+ L+PR +K D+AS+L +AIE++K LQ Q++ +
Sbjct: 291 LSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 340
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKEL 324
++ERKRR ++N+R+ L+ L+PR +K D+AS+L +AIE++K LQ Q++ +
Sbjct: 220 LSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 269
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 38/48 (79%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVK 322
++ER+RR+K+N+ + L+ L+PR +K DR+S+L D IE+VK LQ Q++
Sbjct: 284 LSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>AT2G46810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:19239694-19242373 FORWARD
LENGTH=371
Length = 371
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 29/167 (17%)
Query: 274 LVAERKRRKKLNDRLYNLRSLVPR--ISKLDRASILGDAIEFVKDLQKQVKELQDELEEN 331
+ ER RR+++N L +LRS++P I + D+ASI+G AI+FVK L++Q++ L+
Sbjct: 196 IAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQLQSLE------ 249
Query: 332 SDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQME 391
A+ ++ + IP+ +N +S K A++K+ Q +
Sbjct: 250 ----AQKRSQQSDDNKEQIPEDNSLRN-------------ISSNK---LRASNKEEQSSK 289
Query: 392 PQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTS 438
++E +I+ + +K+ C + G + + L L V+H +TS
Sbjct: 290 LKIEATVIESH-VNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITS 335
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 16/93 (17%)
Query: 247 SDCSDQN-------EEEDD--------GKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNL 291
S+C+DQ+ +EDD GK R G ++L A RKRR+++N+RL L
Sbjct: 237 SNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYA-RKRRERINERLRIL 295
Query: 292 RSLVPRISKLDRASILGDAIEFVKDLQKQVKEL 324
++LVP +K+D +++L +A+ +VK LQ Q+K L
Sbjct: 296 QNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 244 DSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVA-----ERKRRKKLNDRLYNLRSLVPRI 298
DS+ Q E+E++ K ++ + A ERKRR K+N R+ L+ LVP
Sbjct: 184 DSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNS 243
Query: 299 SKLDRASILGDAIEFVKDLQKQVKEL 324
SK D+AS+L + IE++K LQ QV +
Sbjct: 244 SKTDKASMLDEVIEYLKQLQAQVSMM 269
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 260 KYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
+ R R G+ + +AER RR+++ +R+ +L+ LVP +K D+AS+L + IE+V+ LQ
Sbjct: 98 RVRARRGQATDPHS-IAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQL 156
Query: 320 QVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHV---GAPGNGYVSKQK 376
QVK L + G+ +NG + AE G N G GNG +
Sbjct: 157 QVKVL--SMSRLGGAGSVGPRLNGLS-------AEAGGRLNALTAPCNGLNGNGNATGSS 207
Query: 377 QEDASATDKQTQQM 390
E +T+++ ++
Sbjct: 208 NESLRSTEQRVAKL 221
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 260 KYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
K R R G+ + +AER RR+++ +R+ +L+ LVP +K D+AS+L + I++VK LQ
Sbjct: 129 KVRARRGQATDPHS-IAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQL 187
Query: 320 QVKEL 324
QVK L
Sbjct: 188 QVKVL 192
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 260 KYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
K + G + ++L A RKRR+++NDRL L+SLVP +K+D +++L DA+ +VK LQ
Sbjct: 131 KAKANRGIASDPQSLYA-RKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQL 189
Query: 320 QVKELQDE 327
Q+K L E
Sbjct: 190 QIKLLSSE 197
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 259 GKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQ 318
GK R G ++L A RKRR+K+N+RL L++LVP +K+D +++L +A+ +VK LQ
Sbjct: 165 GKTRATKGTATDPQSLYA-RKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
Query: 319 KQVKELQDE 327
Q+K L +
Sbjct: 224 LQIKLLSSD 232
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9678012-9679165 FORWARD
LENGTH=295
Length = 295
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 5/76 (6%)
Query: 259 GKYRRRNGKGNQS-----KNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEF 313
G R+ G +S ++++AERKRR+KL+++ L +L+P + K D+ +IL DAI
Sbjct: 101 GTKRKTCSHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAISR 160
Query: 314 VKDLQKQVKELQDELE 329
+K LQ+Q++ L++E E
Sbjct: 161 MKQLQEQLRTLKEEKE 176
>AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr3:1846531-1848016
FORWARD LENGTH=202
Length = 202
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 273 NLVAERKRRKKLNDRLYNLRSLVP--RISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
++ ER RR+++N+ L +LRSL P I + D+ASI+G IEF+K+LQ+ V+ L+ +
Sbjct: 3 HIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKKRR 62
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQM 390
+ +P P +H + A S+ + ++T K+
Sbjct: 63 KTL------------NRPSFP-YDHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGAC 109
Query: 391 --EPQVEV-ALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVF 447
P V A I G+ ++V G K++ L L V+H ++S + V F
Sbjct: 110 CNSPHANVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFF 169
Query: 448 KVE 450
V+
Sbjct: 170 VVK 172
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 260 KYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
K R R G+ + +AER RR+++ +R+ L+ LVP +K D+AS+L + I++VK LQ
Sbjct: 137 KIRARRGQATDPHS-IAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQL 195
Query: 320 QVKEL 324
QVK L
Sbjct: 196 QVKVL 200
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 258 DGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDL 317
+GK R G ++L A RKRR+++N+RL L+ LVP +K+D +++L +A+++VK L
Sbjct: 234 NGKTRASRGAATDPQSLYA-RKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFL 292
Query: 318 QKQVKEL 324
Q Q+K L
Sbjct: 293 QLQIKLL 299
>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr4:42601-43197 REVERSE LENGTH=198
Length = 198
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 263 RRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVK 322
RRN + + V R+RR+++++++ L+ +VP +K+D AS+L +AI + K L++QV+
Sbjct: 113 RRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVR 172
Query: 323 ELQDELEENSDTGAESNCINGNNGQP 348
LQ + + S +N QP
Sbjct: 173 ILQPHSQIGAPMANPSYLCYYHNSQP 198
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 39/50 (78%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKEL 324
++E+KRR K+N+++ L+ L+P +K D+AS+L +AIE++K LQ QV+ L
Sbjct: 100 LSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTL 149
>AT1G22490.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:7938448-7940489 REVERSE
LENGTH=304
Length = 304
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 98/202 (48%), Gaps = 23/202 (11%)
Query: 273 NLVAERKRRKKLNDRLYNLRSLVPR--ISKLDRASILGDAIEFVKDLQKQVKELQDELEE 330
++ ER RRK++N+ L LRSL+P + D+ASI+G AI +VK+L+ ++ ++ +
Sbjct: 117 HIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHILQSMEPKRTR 176
Query: 331 NSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQM 390
D PK + K VG + + Q +S+ ++
Sbjct: 177 THD-----------------PKGD--KTSTSSLVGPFTDFFSFPQYSTKSSSDVPESSSS 217
Query: 391 EPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTS-HKGLVSNVFKV 449
++EV + + + +K+ + +P KL+ +L +L + ++H VT+ H ++ ++
Sbjct: 218 PAEIEVTVAESHAN-IKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNSILYSISVR 276
Query: 450 EKKDSEMVEAEDVRDSLLELTR 471
++ S++ +D+ +L + R
Sbjct: 277 VEEGSQLNTVDDIATALNQTIR 298
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 40/50 (80%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKEL 324
++E++RR ++N+++ L+SL+P +K D+AS+L +AIE++K LQ QV+ L
Sbjct: 204 LSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 253
>AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr3:8283255-8284915
REVERSE LENGTH=320
Length = 320
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 240 VGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVP--R 297
+ S S+ ++ EEE GK RR E+ RR+KLND+ +L S++ R
Sbjct: 134 INSSSSVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGR 193
Query: 298 ISKLDRASILGDAIEFVKDLQKQVKELQDE----LEENSDTGAESN 339
K D+++IL DAI V L+ + ELQ+ LEE A+ N
Sbjct: 194 TPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKN 239
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 47/67 (70%)
Query: 260 KYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQK 319
K +R+N K + VA R+RR+++++++ L++LVP +K+D AS+L +A ++K L+
Sbjct: 267 KPKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRA 326
Query: 320 QVKELQD 326
QVK L++
Sbjct: 327 QVKALEN 333
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 236 MKHVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLV 295
+ H + S+SD + K R + G ++ +AER RR K+++R+ L+ LV
Sbjct: 279 LAHHMSLPKSLSDIEQLLSDSIPCKIRAKRGCATHPRS-IAERVRRTKISERMRKLQDLV 337
Query: 296 PRI-SKLDRASILGDAIEFVKDLQKQVKELQD 326
P + ++ + A +L A++++KDLQ+QVK L++
Sbjct: 338 PNMDTQTNTADMLDLAVQYIKDLQEQVKALEE 369
>AT4G01460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:621334-622697 FORWARD
LENGTH=315
Length = 315
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 37/191 (19%)
Query: 274 LVAERKRRKKLNDRLYNLRSLVP--RISKLDRASILGDAIEFVKDLQKQVKELQDELEEN 331
+ ER RR+++N+ L +LRSL+P + + D+ASI+G AI+F+K+L++ ++ L+ E
Sbjct: 118 IAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAE---- 173
Query: 332 SDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPG---------NGYVSKQKQEDASA 382
+G + PK + + NG+ ++ D +
Sbjct: 174 ----------KRKDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTARFGGGDTT- 222
Query: 383 TDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGL 442
+VE +I N +KV C+ K + ++ L + ++H T++S
Sbjct: 223 ----------EVEATVIQ-NHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDF 271
Query: 443 VSNVFKVEKKD 453
V F ++ +D
Sbjct: 272 VIYSFNLKMED 282
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 242 RSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNL--VAERKRRKKLNDRLYNLRSLVPRIS 299
RS S + ++ +E+E G+ R NG+ ++ + +ER+RR ++N R+ L+ L+P S
Sbjct: 138 RSGSETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTAS 197
Query: 300 KLDRASILGDAIEFVKDLQKQVK 322
K D+ SIL D IE +K LQ QV+
Sbjct: 198 KADKVSILDDVIEHLKQLQAQVQ 220
>AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 |
chr5:18945639-18947434 FORWARD LENGTH=327
Length = 327
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 274 LVAERKRRKKLNDRLYNLRSLVPR--ISKLDRASILGDAIEFVKDLQKQVKELQDELEEN 331
+ ER RR+++N L LRSL+P+ K D+ASI+G AI+F+K+L+ ++ L+ + N
Sbjct: 91 IAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHN 150
Query: 332 S--DTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQ 389
+ + S+ +NG+ + P + + F + + Y Q+ + S + +T
Sbjct: 151 AKLNQSVTSSTSQDSNGEQENPHQPSSLSLSQFFL----HSYDPSQENRNGSTSSVKT-P 205
Query: 390 MEPQVEVALID 400
ME +EV LI+
Sbjct: 206 ME-DLEVTLIE 215
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 275 VAERKRRKKLNDRLYNLRSLVPRISK-LDRASILGDAIEFVKDLQKQVKELQDE 327
+AER RR +++DR+ L+ LVP + K + A +L +A+E+VK LQ Q++EL ++
Sbjct: 194 IAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQ 247
>AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:23038703-23041174 REVERSE
LENGTH=466
Length = 466
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 268 GNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDE 327
Q +++++ERKRR+KLN+ LRSL+P +K D+AS+L A E + LQ ++ +L
Sbjct: 285 ATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKL--- 341
Query: 328 LEENSDTGAE 337
LE N + A+
Sbjct: 342 LERNREVEAK 351
>AT4G00480.1 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:217106-219684
REVERSE LENGTH=526
Length = 526
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Query: 281 RKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGAESNC 340
R+K N++ LR++VP ++++D+ SIL + I+++++L+ +V+EL+ +C
Sbjct: 346 RRKENEKFSVLRTMVPTVNEVDKESILNNTIKYLQELEARVEELE-------------SC 392
Query: 341 INGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQMEPQVEVAL-I 399
+ N K N + GN Y K +D S +Q + + + +
Sbjct: 393 MGSVNFVERQRKTTENLNDSVLIEETSGN-YDDSTKIDDNSGETEQVTVFRDKTHLRVKL 451
Query: 400 DGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSH 439
E ++V C +R +ME L+ L MD +V SH
Sbjct: 452 KETEVVIEVRCSYRDYIVADIMETLSNLHMDAF--SVRSH 489
>AT4G00480.2 | Symbols: ATMYC1, myc1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:216866-219684
REVERSE LENGTH=580
Length = 580
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Query: 281 RKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGAESNC 340
R+K N++ LR++VP ++++D+ SIL + I+++++L+ +V+EL+ +C
Sbjct: 346 RRKENEKFSVLRTMVPTVNEVDKESILNNTIKYLQELEARVEELE-------------SC 392
Query: 341 INGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQMEPQVEVAL-I 399
+ N K N + GN Y K +D S +Q + + + +
Sbjct: 393 MGSVNFVERQRKTTENLNDSVLIEETSGN-YDDSTKIDDNSGETEQVTVFRDKTHLRVKL 451
Query: 400 DGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSH 439
E ++V C +R +ME L+ L MD +V SH
Sbjct: 452 KETEVVIEVRCSYRDYIVADIMETLSNLHMDAF--SVRSH 489