Miyakogusa Predicted Gene

Lj5g3v2242490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2242490.1 Non Chatacterized Hit- tr|A5AN67|A5AN67_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.45,0.00000002,B3,B3 DNA binding domain; no
description,DNA-binding pseudobarrel domain; B3 DNA binding domain,B3
D,CUFF.57029.1
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...    60   8e-10
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    59   1e-09

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 87  IPMGFINKYVTARVTYAILQAKNKEWHVQLCYDREDGSARFLSSGWSKFVRDCELEEGDT 146
           +P GF  KY++    +  +Q   K+W V+  Y  + G A+F S GW +F  +  L EGD 
Sbjct: 261 LPSGFAEKYLSGISGFIKVQLAEKQWPVRCLY--KAGRAKF-SQGWYEFTLENNLGEGDV 317

Query: 147 CVFELVDKEKFVLKVS 162
           CVFEL+    FVLKV+
Sbjct: 318 CVFELLRTRDFVLKVT 333


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 87  IPMGFINKYVTARVTYAILQAKNKEWHVQLCYDREDGSARFLSSGWSKFVRDCELEEGDT 146
           +P GF  KY++    +  LQ   K+W V+  Y  + G A+F S GW +F  +  + EGD 
Sbjct: 146 LPSGFAEKYLSGISGFIKLQLGEKQWPVRCLY--KAGRAKF-SQGWYEFTLENNIGEGDV 202

Query: 147 CVFELVDKEKFVLKVS 162
           CVFEL+    FVL+V+
Sbjct: 203 CVFELLRTRDFVLEVT 218