Miyakogusa Predicted Gene

Lj5g3v2241460.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241460.3 Non Chatacterized Hit- tr|I3SEW9|I3SEW9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.31,0,RIBOSOMAL_S17,Ribosomal protein S17, conserved site;
arch_S17P: archaeal ribosomal protein S17P,Ribo,CUFF.57331.3
         (146 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23740.1 | Symbols: RPS11-BETA | ribosomal protein S11-beta |...   258   1e-69
AT3G48930.1 | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-l...   256   3e-69
AT4G30800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   250   3e-67

>AT5G23740.1 | Symbols: RPS11-BETA | ribosomal protein S11-beta |
           chr5:8008251-8009330 REVERSE LENGTH=159
          Length = 159

 Score =  258 bits (658), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/146 (83%), Positives = 129/146 (88%)

Query: 1   MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXXNRFWKSIGLGFKTPRDAIEGSYIDKKCP 60
           MAEQTEKAFLKQPKVFL S             NRFWK+IGLGFKTPR+AI+G+YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGNVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VS+RGRILAGTCHSAKM RTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146


>AT3G48930.1 | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-like
           protein | chr3:18141017-18142189 REVERSE LENGTH=160
          Length = 160

 Score =  256 bits (655), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 130/146 (89%)

Query: 1   MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXXNRFWKSIGLGFKTPRDAIEGSYIDKKCP 60
           MAEQTEKAFLKQPKVFL S             NRFWK+IGLGFKTPR+AI+G+Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGNVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VS+RGRILAGTCHSAKM RTIIVRR+YLHF+KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDH+IIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPA 146


>AT4G30800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr4:15001216-15002392 FORWARD LENGTH=159
          Length = 159

 Score =  250 bits (638), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 128/146 (87%)

Query: 1   MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXXNRFWKSIGLGFKTPRDAIEGSYIDKKCP 60
           MAEQTEKAFLKQPKVFL S             NRFWK+IGLGFKTPR+AIEG+YID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGNVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VS+RGRIL+GTCHSAKM RTIIVRR+YLHF+KKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GD V IGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPA 146