Miyakogusa Predicted Gene

Lj5g3v2241450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241450.1 tr|B9N4T5|B9N4T5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_927258 PE=4 SV=1,28.76,7e-19,B3
DNA binding domain,B3 DNA binding domain; no description,DNA-binding
pseudobarrel domain; B3,B3 D,CUFF.57025.1
         (284 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   110   1e-24
AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    69   3e-12
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    67   2e-11
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    64   2e-10
AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    60   2e-09
AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    59   4e-09

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 144/323 (44%), Gaps = 54/323 (16%)

Query: 2   YEGDLSNPVFLKVPDSTKWEIHWTKQNGEVWFEKGWKQFAQNYSLDHGYMVVFKYEGTSH 61
           ++ +LS  V L VPD   W +   K + ++WF+ GW++F   YS+  GY+++F+YEG S 
Sbjct: 30  FKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSA 89

Query: 62  FDVLILDQSALAIHYPSCDKNLDQGNN-------------ESVQFLGETTAHQNAIPEPA 108
           F V I + S   I+Y S    +D  +N             E  + +  ++ + + +PE  
Sbjct: 90  FSVYIFNLSHSEINYHSTGL-MDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPEST 148

Query: 109 MFSSRSYKRMRNDT----PVNVDRNSNMRKLQAEAG------------------DESGQG 146
           + +++ Y      T    PV  +  +   K+  + G                  D+    
Sbjct: 149 VPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENR 208

Query: 147 TKFNKTIKHKLEGVRTTLSTLSLNWPKTSRALEIALNFVTSNPYFTVLIVPSHLAENAVK 206
           +KF ++   +   V            +  RA+  A  F  +NP+F V++ PS+L    + 
Sbjct: 209 SKFYESASARKRTVTAE---------ERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIM 259

Query: 207 QVPKFMDYANRKENVI-----LQLEERRWPVKFVCFPNTPYHRLTCGWSLFIRESKLQVG 261
            +P    +A +  + I     +QL E++WPV+  C       + + GW  F  E+ L  G
Sbjct: 260 YLPS--GFAEKYLSGISGFIKVQLAEKQWPVR--CLYKAGRAKFSQGWYEFTLENNLGEG 315

Query: 262 DICVFEVIDREVPKLKVHVTKVN 284
           D+CVFE++      LKV   +VN
Sbjct: 316 DVCVFELLRTRDFVLKVTAFRVN 338


>AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr1:18312983-18313748 FORWARD LENGTH=190
          Length = 190

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 45/77 (58%)

Query: 6   LSNPVFLKVPDSTKWEIHWTKQNGEVWFEKGWKQFAQNYSLDHGYMVVFKYEGTSHFDVL 65
           L++ V L+ P   K  I   +   EVWFEKGW +FA+ +SL  G+ + F YEG S F V+
Sbjct: 61  LTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVV 120

Query: 66  ILDQSALAIHYPSCDKN 82
           I D SA  I YP  D +
Sbjct: 121 IFDVSASEIEYPLDDTD 137


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 42/291 (14%)

Query: 6   LSNPVFLKVPDSTKWEIHWTKQNGEVW-FEKGWKQFAQNYSLDHGYMVVFKYEGTSHFDV 64
           L   V LK P    + +   + + +   F  GW +F +++SL+   ++VFK+ G S F+V
Sbjct: 51  LPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEV 110

Query: 65  LILDQSALAIHYPSCDKNLDQGNNESVQFLGETTAHQNAIPEPAMFSSRSYKRMRNDTPV 124
           L+ D   L      C+K           +      H     E    S   Y++  +    
Sbjct: 111 LVFDGQTL------CEK--------PTSYFVRKCGH----AEKTKASHTGYEQEEH---- 148

Query: 125 NVDRNSNMRKLQAEAGDESGQGTKFNKTIKHKLEGVRTTLSTLS------------LNWP 172
               NS++    A+    S   T      K+ L G +     LS            ++  
Sbjct: 149 ---INSDIDTASAQLPVISPTSTVRVSEGKYPLSGFKKMRRELSNDNLDQKADVEMISAG 205

Query: 173 KTSRALEIALNFVTSNPYFTVLIVPSHLAENAVKQVPKFMDYAN---RKENVILQLEERR 229
              +AL +A   ++ +  F V +  SH+       +P      N    ++ V++Q+++ +
Sbjct: 206 SNKKALSLAKRAISPDG-FLVFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQVDQTK 264

Query: 230 WPVKFVCFPNTPYHRLTCGWSLFIRESKLQVGDICVFEVIDREVPKLKVHV 280
           W +KF  F       ++ GW  F++++ L+ GD+CVFE  + E   L ++V
Sbjct: 265 WEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNV 315


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 31/209 (14%)

Query: 82  NLDQGNNESVQ-FLGETTAHQNAIPEPAMFSSRSYKRMRNDTPVNVDRNSNMRKLQAEAG 140
           N   G + ++Q F  E+ A +     P +   R  K+ +N  P  V+ ++         G
Sbjct: 40  NKGYGGSTAIQSFFKESKAEET----PKVLKKRGRKK-KNPNPEEVNSST-------PGG 87

Query: 141 DESGQGTKFNKTIKHKLEGVRTTLSTLSLNWPKTSRALEIALNFVTSNPYFTVLIVPSHL 200
           D+S   +KF ++   +   V            +  RA+  A  F  +NPYF V++ PS+L
Sbjct: 88  DDSENRSKFYESASARKRTVTAE---------ERERAVNAAKTFEPTNPYFRVVLRPSYL 138

Query: 201 AENAVKQVPKFMDYANRKENVI-----LQLEERRWPVKFVCFPNTPYHRLTCGWSLFIRE 255
               +  +P    +A +  + I     LQL E++WPV+  C       + + GW  F  E
Sbjct: 139 YRGCIMYLPS--GFAEKYLSGISGFIKLQLGEKQWPVR--CLYKAGRAKFSQGWYEFTLE 194

Query: 256 SKLQVGDICVFEVIDREVPKLKVHVTKVN 284
           + +  GD+CVFE++      L+V   +VN
Sbjct: 195 NNIGEGDVCVFELLRTRDFVLEVTAFRVN 223


>AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:685791-686668 FORWARD LENGTH=190
          Length = 190

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%)

Query: 6   LSNPVFLKVPDSTKWEIHWTKQNGEVWFEKGWKQFAQNYSLDHGYMVVFKYEGTSHFDVL 65
           LS  V L  P   K  I   +   E+WF +GW +FA+ +S++ G+ ++F+Y+  S F V+
Sbjct: 58  LSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVI 117

Query: 66  ILDQSALAIHYPSCDKNLDQGNNESVQFLGE 96
           I + SA   +YP    ++   +++ ++  G+
Sbjct: 118 IFNASACETNYPLDAVHIIDSDDDVIEITGK 148


>AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6542618-6543568 FORWARD LENGTH=209
          Length = 209

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 6   LSNPVFLKVPDSTKWEIHWTKQNGEVWFEKGWKQFAQNYSLDHGYMVVFKYEGTSHFDVL 65
           LS  V L+ P   K  I   +   E+WF +GW +FA+ +S++ G+ ++F+Y+  S F V+
Sbjct: 58  LSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVI 117

Query: 66  ILDQSALAIHYP 77
           I + SA    YP
Sbjct: 118 IFNVSACETKYP 129