Miyakogusa Predicted Gene

Lj5g3v2241260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241260.1 Non Chatacterized Hit- tr|C5KE09|C5KE09_PERM5
Putative uncharacterized protein (Fragment)
OS=Perkins,30,0.00001,BRAIN PROTEIN 44-LIKE,NULL; UPF0041 BRAIN
PROTEIN 44-RELATED,NULL; UPF0041,Uncharacterised protein
f,CUFF.57033.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20090.2 | Symbols:  | Uncharacterised protein family (UPF004...   197   1e-51
AT5G20090.1 | Symbols:  | Uncharacterised protein family (UPF004...   197   1e-51
AT5G20090.3 | Symbols:  | Uncharacterised protein family (UPF004...   180   2e-46
AT4G22310.1 | Symbols:  | Uncharacterised protein family (UPF004...    69   7e-13
AT4G14695.1 | Symbols:  | Uncharacterised protein family (UPF004...    68   1e-12
AT4G05590.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Uncharacte...    67   2e-12
AT4G05590.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Uncharacte...    56   5e-09

>AT5G20090.2 | Symbols:  | Uncharacterised protein family (UPF0041)
           | chr5:6787246-6788000 REVERSE LENGTH=110
          Length = 110

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 96/105 (91%)

Query: 3   SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLSGNMTSAMCVYSALFMRF 62
           S F+AFLNSPIGPKTTHFWGP+ANWGFV AGL D+ KPPEM+SGNM+SAMCVYSALFMRF
Sbjct: 4   SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 63  AWMVQPRNYLLLACHASNETVQLYHFTRWAKSQGYLSGKKEEASP 107
           AWMVQPRNYLLLACHASNETVQLY  +RWA++QGYLS KKEE  P
Sbjct: 64  AWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEEKP 108


>AT5G20090.1 | Symbols:  | Uncharacterised protein family (UPF0041)
           | chr5:6787246-6788000 REVERSE LENGTH=110
          Length = 110

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 96/105 (91%)

Query: 3   SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLSGNMTSAMCVYSALFMRF 62
           S F+AFLNSPIGPKTTHFWGP+ANWGFV AGL D+ KPPEM+SGNM+SAMCVYSALFMRF
Sbjct: 4   SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 63  AWMVQPRNYLLLACHASNETVQLYHFTRWAKSQGYLSGKKEEASP 107
           AWMVQPRNYLLLACHASNETVQLY  +RWA++QGYLS KKEE  P
Sbjct: 64  AWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEEEKP 108


>AT5G20090.3 | Symbols:  | Uncharacterised protein family
          (UPF0041) | chr5:6787543-6788000 REVERSE LENGTH=97
          Length = 97

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 80/94 (85%), Positives = 88/94 (93%)

Query: 3  SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLSGNMTSAMCVYSALFMRF 62
          S F+AFLNSPIGPKTTHFWGP+ANWGFV AGL D+ KPPEM+SGNM+SAMCVYSALFMRF
Sbjct: 4  SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 63 AWMVQPRNYLLLACHASNETVQLYHFTRWAKSQG 96
          AWMVQPRNYLLLACHASNETVQLY  +RWA++QG
Sbjct: 64 AWMVQPRNYLLLACHASNETVQLYQLSRWARAQG 97


>AT4G22310.1 | Symbols:  | Uncharacterised protein family
          (UPF0041) | chr4:11791443-11792638 FORWARD LENGTH=108
          Length = 108

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 3  SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLSGNMTSAMCVYSALFMRF 62
          S  +A  N P GPKT HFW P   WG  +A +AD  KPPE LS     A+     ++ R+
Sbjct: 4  SKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSRY 63

Query: 63 AWMVQPRNYLLLACHASNETVQLYHFTR 90
          + ++ P+N+ L + + +     +Y   R
Sbjct: 64 SMVINPKNWNLFSVNVAMAGTGIYQLAR 91


>AT4G14695.1 | Symbols:  | Uncharacterised protein family
          (UPF0041) | chr4:8419833-8420845 FORWARD LENGTH=109
          Length = 109

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 3  SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLSGNMTSAMCVYSALFMRF 62
          S  +A  N P GPKT HFW P   WG  +A +AD  KPPE +S     A+     ++ R 
Sbjct: 4  SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIAVTCTGMIWCRC 63

Query: 63 AWMVQPRNYLLLACHASNETVQLYHFTR 90
          + ++ P+N+ L + + +     +Y  TR
Sbjct: 64 STIITPKNWNLFSVNVAMAATGIYQLTR 91


>AT4G05590.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
          Uncharacterised protein family UPF0041
          (InterPro:IPR005336); BEST Arabidopsis thaliana protein
          match is: Uncharacterised protein family (UPF0041)
          (TAIR:AT4G22310.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:2907176-2908297 FORWARD LENGTH=108
          Length = 108

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query: 3  SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLSGNMTSAMCVYSALFMRF 62
          S  +A  N P GPKT HFW P   WG  +A +AD  KPPE LS      +     ++ R+
Sbjct: 4  SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLSYPQQIVITGTGLVWSRY 63

Query: 63 AWMVQPRNYLLLACHASNETVQLYHFTR 90
          + ++ P+N+ L +         +Y  TR
Sbjct: 64 STVITPKNWNLFSVSLGMAVTGIYQLTR 91


>AT4G05590.2 | Symbols:  | CONTAINS InterPro DOMAIN/s:
          Uncharacterised protein family UPF0041
          (InterPro:IPR005336); BEST Arabidopsis thaliana protein
          match is: Uncharacterised protein family (UPF0041)
          (TAIR:AT4G22310.1); Has 35333 Blast hits to 34131
          proteins in 2444 species: Archae - 798; Bacteria -
          22429; Metazoa - 974; Fungi - 991; Plants - 531;
          Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
          BLink). | chr4:2907176-2908297 FORWARD LENGTH=146
          Length = 146

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 26/43 (60%)

Query: 3  SSFRAFLNSPIGPKTTHFWGPVANWGFVVAGLADLNKPPEMLS 45
          S  +A  N P GPKT HFW P   WG  +A +AD  KPPE LS
Sbjct: 4  SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLS 46