Miyakogusa Predicted Gene

Lj5g3v2241250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241250.1 tr|B7EG35|B7EG35_ORYSJ cDNA clone:J023010F18,
full insert sequence OS=Oryza sativa subsp. japonica
P,72,0.00000000001,no description,PSPTO4464-like domain;
DUF615,Ribosome-associated, YjgA; seg,NULL;
coiled-coil,NULL,CUFF.57018.1
         (297 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24175.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   206   2e-53

>AT4G24175.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Uncharacterised protein family UPF0307
           (InterPro:IPR006839); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:12547018-12548810 FORWARD LENGTH=306
          Length = 306

 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 148/219 (67%), Gaps = 5/219 (2%)

Query: 79  DSESKKSRNELKREARRAVKWGMDLASFSAPQIKRVLRVLSLDEVVFEALMVVKRLGPDV 138
           +S+S +SRN+ KR+ARRAVKWGM+LASFS  Q+K++L+  SL E V++ALM+ KRLG DV
Sbjct: 82  ESDSLRSRNQRKRDARRAVKWGMELASFSGDQVKQILKAASLGEEVYDALMLAKRLGSDV 141

Query: 139 REGRRRQFSYIGKLLRGADPELMDRLIRATRDSDQKELQALTG----LXXXXXXXXXXXX 194
           REG+RR F+YIGKLLR  +P+LMD LI AT+  D   LQ L      +            
Sbjct: 142 REGKRRHFNYIGKLLREVEPDLMDTLINATKQGDHSTLQTLISSAKDVADDVGDSYDDDT 201

Query: 195 XXXXXXXXXXXNLHDSQATRWFDGLINKDIQITNEVYSIQGVDFDRQELRKLVRRVHVAQ 254
                      + + + A RWFDGLI++++++T EVYS+Q VDFDRQELRKLVR+V +  
Sbjct: 202 ETESEDEEEGSDEYTAMAARWFDGLISQNVELTKEVYSLQSVDFDRQELRKLVRKVQLVH 261

Query: 255 E-RKADNEEDEKKIETAVIGAKKALTRFLRHVSKRIPDE 292
           E RK   EE +K++E A++ A+K+L +FL  ++K++  E
Sbjct: 262 EQRKGTTEEKQKEVEAALVTAEKSLNQFLCSMAKQVHSE 300