Miyakogusa Predicted Gene

Lj5g3v2240790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2240790.1 tr|I1LF09|I1LF09_SOYBN Ribonuclease OS=Glycine
max GN=Gma.22030 PE=3 SV=1,84.62,0,no description,NULL; no
description,Ribonuclease HII, helix-loop-helix cap domain;
RIBONUCLEASE H2 S,CUFF.56989.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25100.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   313   5e-86
AT2G25100.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   277   3e-75

>AT2G25100.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:10679767-10681654
           REVERSE LENGTH=296
          Length = 296

 Score =  313 bits (802), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 148/207 (71%), Positives = 177/207 (85%), Gaps = 2/207 (0%)

Query: 1   MLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEVKLSKNFPSIKFVV 60
           ML KNK NLNEISH+SAMGL+ RVL MGVLLTE Y+DTVGDP KY +KLS+ FPSIKFVV
Sbjct: 91  MLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVV 150

Query: 61  AKKADSLYPVVSGASIVAKVTRDQAIRQWVLEETAENMHRNFGSGYPGDPTTKSWLEHHK 120
           +KKADSL+P+VSGASIVAKVTRD+A+++W++EET E+++RNFGSGYPGDP TK+WL  HK
Sbjct: 151 SKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHK 210

Query: 121 NSVFGFPTLVRFSWGTCTTYFKDGAEVLWEADKDEDEGGNNNSRKRQLKLSNVGF-TTSK 179
           +SVFGFP+LVRFSWGTCTT+ K   EV WEAD++E E GN +S KRQ KLS+ GF T  K
Sbjct: 211 HSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADENE-ESGNGSSSKRQAKLSSFGFKTCEK 269

Query: 180 RSEEIESSGKGRSRFFQARKLEHLSHF 206
           RSEEIESSGKGR +F QARK++ L+ F
Sbjct: 270 RSEEIESSGKGRCKFLQARKIQQLTQF 296


>AT2G25100.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:10679767-10681654
           REVERSE LENGTH=277
          Length = 277

 Score =  277 bits (709), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 160/188 (85%), Gaps = 2/188 (1%)

Query: 20  LVDRVLKMGVLLTEVYIDTVGDPGKYEVKLSKNFPSIKFVVAKKADSLYPVVSGASIVAK 79
           ++ +VL MGVLLTE Y+DTVGDP KY +KLS+ FPSIKFVV+KKADSL+P+VSGASIVAK
Sbjct: 91  MLAKVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 150

Query: 80  VTRDQAIRQWVLEETAENMHRNFGSGYPGDPTTKSWLEHHKNSVFGFPTLVRFSWGTCTT 139
           VTRD+A+++W++EET E+++RNFGSGYPGDP TK+WL  HK+SVFGFP+LVRFSWGTCTT
Sbjct: 151 VTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTT 210

Query: 140 YFKDGAEVLWEADKDEDEGGNNNSRKRQLKLSNVGF-TTSKRSEEIESSGKGRSRFFQAR 198
           + K   EV WEAD++E E GN +S KRQ KLS+ GF T  KRSEEIESSGKGR +F QAR
Sbjct: 211 HLKGEVEVAWEADENE-ESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQAR 269

Query: 199 KLEHLSHF 206
           K++ L+ F
Sbjct: 270 KIQQLTQF 277