Miyakogusa Predicted Gene

Lj5g3v2240780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2240780.1 Non Chatacterized Hit- tr|A5BBN8|A5BBN8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.62,0.0001,Hemerythrin,Haemerythrin/HHE cation-binding motif;
seg,NULL; no description,NULL,CUFF.56990.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54290.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   341   4e-94

>AT3G54290.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: N-terminal protein myristoylation; LOCATED
           IN: chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Haemerythrin/HHE cation-binding motif
           (InterPro:IPR012312); Has 59 Blast hits to 59 proteins
           in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0;
           Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr3:20104623-20105845 REVERSE
           LENGTH=350
          Length = 350

 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 178/348 (51%), Positives = 229/348 (65%), Gaps = 35/348 (10%)

Query: 1   MGNCFGKSEKLTAEIVPH----------------------------GGARVYPTVRLYGS 32
           MG CF  S K TAEI P                                    TVRLYG 
Sbjct: 1   MGTCFSSSTKSTAEISPFDLVVKPPPPSAAATAPPTQRIPTAKTETSTVSFTATVRLYGP 60

Query: 33  PKSILAAYIRFALLHKSVSPDFVPSDNRADPVTLQVGSEVVSGSRETLLRFIDERFPSPP 92
           P S++ +Y+RFALLHK V   FVPS+++    T+QVGSE VSGSRE LLR+I+++FP P 
Sbjct: 61  PNSLVTSYLRFALLHKKVPLRFVPSEDQKP--TIQVGSETVSGSREVLLRYIEDKFPEPR 118

Query: 93  LXXXXXXXX---XTAPVMVTVTRLQHKSMLWHVERVLRWAEDLAARGGKKAVDPSVGTPK 149
           L              P++V +  LQH+SMLWH+ER+LRW+EDLAARGGKKAVDPSVGTPK
Sbjct: 119 LMIWKFNLEGFDEATPLIVKMIWLQHRSMLWHMERMLRWSEDLAARGGKKAVDPSVGTPK 178

Query: 150 MEVRKFARSYSELLEVMMEHAQMEETLLFPLFDSADRGLSKAAKEEHARDLPLMNGIKEV 209
           ME+RKFA+SY+ L E+M+EHAQMEE +LFP+ +S DRG+ K+A EEH R+LP+MNGIKE 
Sbjct: 179 MEIRKFAKSYTHLQELMLEHAQMEERILFPVLESVDRGMCKSANEEHGRELPMMNGIKED 238

Query: 210 IKSVGVLNPGSPDYREALCNLSARLKLLQRQCKLHFKEEEVELLPLMEALELSKEGEESA 269
           IKS+GVL+ G     EAL +L++R K LQ  CK HF+EEE +LLP++EA E+ KE ++  
Sbjct: 239 IKSIGVLDSGI--CSEALFSLASRFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296

Query: 270 LEQCFDVMQGTHGRLFKFLLEGLRPRDAMKYLDLISKCRDRERMESML 317
           + Q  +VM GTH   F FLLEGL P++AM+Y+DL+    D   + S L
Sbjct: 297 MNQSLEVMSGTHSNSFDFLLEGLTPQEAMQYIDLLMTFGDPNLISSFL 344