Miyakogusa Predicted Gene

Lj5g3v2239750.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2239750.1 Non Chatacterized Hit- tr|B4FZI1|B4FZI1_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.11,3e-19,ZF_RING_2,Zinc finger, RING-type; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; no description,Zi,CUFF.56986.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75400.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   117   2e-27
AT1G19680.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   104   2e-23
AT4G39140.5 | Symbols:  | RING/U-box superfamily protein | chr4:...    87   4e-18
AT4G39140.4 | Symbols:  | RING/U-box superfamily protein | chr4:...    87   4e-18
AT4G39140.3 | Symbols:  | RING/U-box superfamily protein | chr4:...    87   4e-18
AT4G39140.2 | Symbols:  | RING/U-box superfamily protein | chr4:...    87   4e-18
AT4G39140.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    87   4e-18
AT2G21500.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    84   3e-17
AT2G21500.2 | Symbols:  | RING/U-box superfamily protein | chr2:...    84   3e-17
AT5G18260.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    58   2e-09
AT1G14180.2 | Symbols:  | RING/U-box superfamily protein | chr1:...    56   9e-09
AT1G14180.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    56   1e-08

>AT1G75400.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28297609-28299464 FORWARD LENGTH=455
          Length = 455

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 82/109 (75%), Gaps = 3/109 (2%)

Query: 1   MVASSQKGRWSFDSEYLGSGHHKLSGTSSRFSYSPSM-DLQACMGCSKLLTERSAWSSAG 59
           +VA SQ+ RWSFDSE+LGSG  KLSG SSRFS+SPS+ D Q C  CSKLLTERS  S A 
Sbjct: 239 LVAYSQRDRWSFDSEHLGSGRRKLSGGSSRFSFSPSVVDQQVCGACSKLLTERS--SIAT 296

Query: 60  NNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSK 108
             + + +VLACGHV+HAECLETMT   + YDP C +CT GEK + K+++
Sbjct: 297 FELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICTIGEKRVAKITR 345


>AT1G19680.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:6805909-6807682 FORWARD LENGTH=444
          Length = 444

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 5/113 (4%)

Query: 1   MVASSQKGRWSFDSEYLGSGHHKLSGTSSRFSYSPS-MDLQACMGCSKLLTERSAWSSAG 59
           +VA SQ+ RWSFD+E+LGSG  +LSG SS        +D Q C  CSKLLTERS    A 
Sbjct: 231 LVAQSQRERWSFDNEHLGSGRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTERSPV--AR 288

Query: 60  NNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
            ++ + +VLACGHV+HA CLETMT + + YDP C +CT  E  + KLS+K L+
Sbjct: 289 FDLPIPAVLACGHVYHAACLETMTNETEKYDPTCPICT--ETQVTKLSRKALK 339


>AT4G39140.5 | Symbols:  | RING/U-box superfamily protein |
           chr4:18229637-18231282 REVERSE LENGTH=429
          Length = 429

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 11  SFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSSAG----NNISVVS 66
           ++D++  G    K+    +R S         C  CS+ L+E+S WSS      N +SV +
Sbjct: 232 NYDNDCFGLQRDKIDHHGNRMS---KHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSA 288

Query: 67  VLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
           +LACGHV+H ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 289 ILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334


>AT4G39140.4 | Symbols:  | RING/U-box superfamily protein |
           chr4:18229637-18231282 REVERSE LENGTH=429
          Length = 429

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 11  SFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSSAG----NNISVVS 66
           ++D++  G    K+    +R S         C  CS+ L+E+S WSS      N +SV +
Sbjct: 232 NYDNDCFGLQRDKIDHHGNRMS---KHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSA 288

Query: 67  VLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
           +LACGHV+H ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 289 ILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334


>AT4G39140.3 | Symbols:  | RING/U-box superfamily protein |
           chr4:18229637-18231282 REVERSE LENGTH=429
          Length = 429

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 11  SFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSSAG----NNISVVS 66
           ++D++  G    K+    +R S         C  CS+ L+E+S WSS      N +SV +
Sbjct: 232 NYDNDCFGLQRDKIDHHGNRMS---KHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSA 288

Query: 67  VLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
           +LACGHV+H ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 289 ILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334


>AT4G39140.2 | Symbols:  | RING/U-box superfamily protein |
           chr4:18229637-18231282 REVERSE LENGTH=429
          Length = 429

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 11  SFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSSAG----NNISVVS 66
           ++D++  G    K+    +R S         C  CS+ L+E+S WSS      N +SV +
Sbjct: 232 NYDNDCFGLQRDKIDHHGNRMS---KHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSA 288

Query: 67  VLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
           +LACGHV+H ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 289 ILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334


>AT4G39140.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:18229637-18231282 REVERSE LENGTH=429
          Length = 429

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 11  SFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSSAG----NNISVVS 66
           ++D++  G    K+    +R S         C  CS+ L+E+S WSS      N +SV +
Sbjct: 232 NYDNDCFGLQRDKIDHHGNRMS---KHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSA 288

Query: 67  VLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
           +LACGHV+H ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 289 ILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334


>AT2G21500.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:9207965-9209575 REVERSE LENGTH=421
          Length = 421

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 8/116 (6%)

Query: 1   MVASSQKGRWSFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSS--- 57
           M+A S++   S+D+E  G    K+    SR     S D Q C  CS+ L+E+S  SS   
Sbjct: 214 MMAYSRRESCSYDNECFGLRRDKIDNLGSR----KSNDQQNCGACSRSLSEKSLLSSQKI 269

Query: 58  -AGNNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
            A N +SV ++LACGHV+H+ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 270 FATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALK 325


>AT2G21500.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:9207965-9209575 REVERSE LENGTH=421
          Length = 421

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 8/116 (6%)

Query: 1   MVASSQKGRWSFDSEYLGSGHHKLSGTSSRFSYSPSMDLQACMGCSKLLTERSAWSS--- 57
           M+A S++   S+D+E  G    K+    SR     S D Q C  CS+ L+E+S  SS   
Sbjct: 214 MMAYSRRESCSYDNECFGLRRDKIDNLGSR----KSNDQQNCGACSRSLSEKSLLSSQKI 269

Query: 58  -AGNNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCTAGEKNLLKLSKKGLR 112
            A N +SV ++LACGHV+H+ECLE MT + D +DP C +CT GEK   KLS+K L+
Sbjct: 270 FATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALK 325


>AT5G18260.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:6036226-6037295 REVERSE LENGTH=320
          Length = 320

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 36  SMDLQACMGCSKLLTERSAWSS----AGNNISVVSVLACGHVFHAECLETMTAKEDSYDP 91
           SM  Q C  C KLL+++S WSS       ++    V  C HV+H ECL+  T    + DP
Sbjct: 186 SMTHQRCGICKKLLSQKSPWSSYKILRSRDMPATGVFPCHHVYHVECLDKATPTAQTRDP 245

Query: 92  VCLVCTAGEKNLLKLSKKGLRDPSGADLSPRMILPGRRAFGRDIVKI 138
            C VC+    N + + ++ L  P    ++ R +   R A   + V++
Sbjct: 246 SCPVCS----NTIGVMEQPLIAPETLQMALRSLRRSRTALELETVRV 288


>AT1G14180.2 | Symbols:  | RING/U-box superfamily protein |
           chr1:4847976-4848970 FORWARD LENGTH=297
          Length = 297

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 42  CMGCSKLLTERSAWSSA----GNNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCT 97
           C  C++ L+++S W S       ++ V  VL+C HVFH ECL+  T K    DP+C +CT
Sbjct: 134 CGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICT 193

Query: 98  AGEKNLLK 105
             E    K
Sbjct: 194 KQEGEHFK 201


>AT1G14180.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:4847828-4848970 FORWARD LENGTH=348
          Length = 348

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 42  CMGCSKLLTERSAWSSA----GNNISVVSVLACGHVFHAECLETMTAKEDSYDPVCLVCT 97
           C  C++ L+++S W S       ++ V  VL+C HVFH ECL+  T K    DP+C +CT
Sbjct: 185 CGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICT 244

Query: 98  AGEKNLLK 105
             E    K
Sbjct: 245 KQEGEHFK 252