Miyakogusa Predicted Gene

Lj5g3v2224380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2224380.1 Non Chatacterized Hit- tr|I1N866|I1N866_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.67,0,SUBFAMILY NOT
NAMED,NULL; CCR4 NOT-RELATED,NULL;
NOT2_3_5,NOT2/NOT3/NOT5,CUFF.56965.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18230.1 | Symbols:  | transcription regulator NOT2/NOT3/NOT5...   219   5e-58
AT5G18230.2 | Symbols:  | transcription regulator NOT2/NOT3/NOT5...   219   6e-58
AT1G07705.2 | Symbols:  | NOT2 / NOT3 / NOT5 family | chr1:23820...    58   3e-09
AT5G59710.1 | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein ...    57   5e-09

>AT5G18230.1 | Symbols:  | transcription regulator NOT2/NOT3/NOT5
           family protein | chr5:6021610-6027031 REVERSE LENGTH=843
          Length = 843

 Score =  219 bits (558), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 108/151 (71%), Positives = 128/151 (84%), Gaps = 1/151 (0%)

Query: 1   MLEAAHHKIPLAKDSERPRTYTPRHPTITPSSYPQIQAPIVNNPAFWEKVGQEPFGTDTL 60
           MLEAA +K P   DSERPR Y+PR+P ITP ++PQ QAPI+NNP  WE++G + +GTDTL
Sbjct: 693 MLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTL 752

Query: 61  FFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHI 120
           FFAFYYQQN+YQQYLAA+ELKKQSWRYHRK++TWFQRH+EPK+ATDE+E+G YVYFDF  
Sbjct: 753 FFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQT 812

Query: 121 ANDDLQH-GWCQRIKTGFTFEYNYLEDELVV 150
             D+ Q  GWCQRIK  FTFEY+YLEDELVV
Sbjct: 813 PKDENQEGGWCQRIKNEFTFEYSYLEDELVV 843


>AT5G18230.2 | Symbols:  | transcription regulator NOT2/NOT3/NOT5
           family protein | chr5:6021610-6027031 REVERSE LENGTH=845
          Length = 845

 Score =  219 bits (557), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 108/151 (71%), Positives = 128/151 (84%), Gaps = 1/151 (0%)

Query: 1   MLEAAHHKIPLAKDSERPRTYTPRHPTITPSSYPQIQAPIVNNPAFWEKVGQEPFGTDTL 60
           MLEAA +K P   DSERPR Y+PR+P ITP ++PQ QAPI+NNP  WE++G + +GTDTL
Sbjct: 695 MLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTL 754

Query: 61  FFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHI 120
           FFAFYYQQN+YQQYLAA+ELKKQSWRYHRK++TWFQRH+EPK+ATDE+E+G YVYFDF  
Sbjct: 755 FFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQT 814

Query: 121 ANDDLQH-GWCQRIKTGFTFEYNYLEDELVV 150
             D+ Q  GWCQRIK  FTFEY+YLEDELVV
Sbjct: 815 PKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845


>AT1G07705.2 | Symbols:  | NOT2 / NOT3 / NOT5 family |
           chr1:2382090-2385856 FORWARD LENGTH=614
          Length = 614

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 58  DTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFD 117
           +TLF+ FY       Q  AA EL  + W YH+++  WF R  EP V T+ +E G+Y  FD
Sbjct: 524 ETLFYVFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRIGEPLVKTNAYERGSYHCFD 583


>AT5G59710.1 | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein 2 |
           chr5:24058157-24061736 FORWARD LENGTH=614
          Length = 614

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 11  LAKDSERPRTYTPRHPTI---TPSSYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQ 67
           L K    P T  P    +    P+ Y   + P +   +F      + F  + LF+ FY  
Sbjct: 483 LYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASF------KRFSYELLFYTFYSM 536

Query: 68  QNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFD 117
                Q  AA EL ++ W YH++   WF R  EP V    +E GTY Y D
Sbjct: 537 PKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATYERGTYEYLD 586