Miyakogusa Predicted Gene

Lj5g3v2223370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2223370.1 Non Chatacterized Hit- tr|B9S9R9|B9S9R9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,26.4,1e-17,seg,NULL; coiled-coil,NULL,CUFF.56961.1
         (1450 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55820.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Inner cent...   145   2e-34

>AT5G55820.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Inner
            centromere protein, ARK-binding region
            (InterPro:IPR005635); Has 1807 Blast hits to 1807
            proteins in 277 species: Archae - 0; Bacteria - 0;
            Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
            Other Eukaryotes - 339 (source: NCBI BLink). |
            chr5:22586287-22594035 FORWARD LENGTH=1826
          Length = 1826

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 181/376 (48%), Gaps = 70/376 (18%)

Query: 1080 LDLIDSDEAVPE-FEGFIMQTDNAQPCTAGDQVELERMDLPINSIDYASL----SQSMST 1134
            L LI SD+  P   EGFI+QTD+     + +Q+  +   LP  + + A++     +S   
Sbjct: 1151 LGLISSDDGSPPVLEGFIIQTDDENQSGSKNQLNHDSFQLPRTTAESAAMIEQICKSACM 1210

Query: 1135 HSPLSYSSTPYKLHDMTDLFQSVPNGL---------LEGFGLRNSIPLN-DGSRRALSDC 1184
            ++P  + +  +K  +  DL QSV   L         LEG  + +++ +N D + R+ +D 
Sbjct: 1211 NTPSLHLAKTFKFDEKLDLDQSVSTELFDGMFFSQNLEGSSVFDNLGINHDYTGRSYTDS 1270

Query: 1185 VP----NRQGQYTCS--VQTLWDRINSNHGSSGKR------------------------- 1213
            +P    + + +  C    + LW R      SS KR                         
Sbjct: 1271 LPGTGSSAEARNPCMSPTEKLWYRSLQKSSSSEKRSTQTPDLPCISEENENIEEEAENLC 1330

Query: 1214 ----KSLKSE--------LPCISEENENVDEIEGTFDKGIGLEGMTGSITREPLTEIIDN 1261
                KS++SE        LPCI+EENEN+DEI    ++  G E    S  R+PL ++  N
Sbjct: 1331 TNTPKSMRSEKRGSSIPELPCIAEENENIDEISDAVNEASGSERENVSAERKPLGDV--N 1388

Query: 1262 SNPST---SVVQDNILTGGH-VDLVSTEFSFSGTQTKVKRKLGEQDGNRRFTRKAKENQS 1317
             +P     SV +  I      +D VST FSFS     VK K+G+   NRRFT K KENQ 
Sbjct: 1389 EDPMKLLPSVSEAKIPADRQSLDSVSTAFSFSAKCNSVKSKVGKL-SNRRFTGKGKENQ- 1446

Query: 1318 LSFGANGAKRTTPSMHKRSSRPKLSGKDSLRRQGAPNSEVKSARKNIVSNITSFIPLV-Q 1376
               G  GAKR       R S+PKLS   SL   G    E +    NIVSNITSF+PLV Q
Sbjct: 1447 ---GGAGAKRNVKPPSSRFSKPKLSCNSSLTTVGPRLQEKEPRHNNIVSNITSFVPLVQQ 1503

Query: 1377 QKQAAAVITGKRDIKV 1392
            QK A A+ITGKRD+KV
Sbjct: 1504 QKPAPALITGKRDVKV 1519



 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 4   MEKHVAQIFDTTKRIIDQARHDCHLWEHHLFPKLLLNGILPPPWLCNSTLHPLASDPKDL 63
           +E    QIF+  +RI++Q +    L++ HL  K LL G+ PP WL + +   L S   +L
Sbjct: 48  IENLFVQIFERKRRIVEQVQQQVDLYDQHLASKCLLAGVSPPSWLWSPS---LPSQTSEL 104

Query: 64  NKDDLVSEVLLSQPQFRVAVPGYK 87
           NK++++SE+L    +  +  P  +
Sbjct: 105 NKEEIISELLFPSSRPSIVCPSSR 128