Miyakogusa Predicted Gene

Lj5g3v2220290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2220290.2 tr|A9S5X8|A9S5X8_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,30.8,4e-17,KOW (Kyprides, Ouzounis, Woese) motif.,KOW;
Translation proteins SH3-like domain,Translation protein,CUFF.56974.2
         (788 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04290.1 | Symbols: KTF1, SPT5L | kow domain-containing trans...   582   e-166
AT4G08350.1 | Symbols: GTA02, GTA2 | global transcription factor...   206   5e-53
AT2G34210.1 | Symbols:  | Transcription elongation factor Spt5 |...   200   3e-51

>AT5G04290.1 | Symbols: KTF1, SPT5L | kow domain-containing
           transcription factor 1 | chr5:1196069-1202653 FORWARD
           LENGTH=1493
          Length = 1493

 Score =  582 bits (1499), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 319/685 (46%), Positives = 429/685 (62%), Gaps = 37/685 (5%)

Query: 4   KGKQVAGKDS--AGKRKANFXX--XXXXXXXXXXXXXVVQFFEEAAAVXXXXXXXXXXXX 59
           KGKQVAG DS   G+++ N                  V+QFFEE+A V            
Sbjct: 6   KGKQVAGSDSYSGGQKRKNSVEFRDEGLRIKKRKNPEVLQFFEESAEVGYYGGSSDEDDD 65

Query: 60  XXXXXXXXEYETLSTMLNDTNASAKSQSRPAFVPKEEVVDEEFDRFLEERYAGGSKFSHF 119
                   E E      +      K +S   F  +E++ +EEFDR +EERY  GS F  +
Sbjct: 66  GLGFLNDMEDEPEVEESSKAGKGEKGKSSFVFPKEEDLNEEEFDRIMEERYKPGSGFLRY 125

Query: 120 ADEYDDKPMDPSSMHPGAKEVTPAIWKVKCTVGRERLSAFCLMQKFADMKKLGTNLKLIS 179
           AD+     ++  ++ P +K+  P IWKVKC +GRER S FCLM KF +++K+GT L++IS
Sbjct: 126 ADDDIKDAIEMDALAPTSKD--PPIWKVKCAIGRERRSVFCLMHKFVELRKIGTKLEIIS 183

Query: 180 AFAVDHMKGFVYMEADKQCDINEACKGLTGIYVTRVQPVPPNEVYHLFSVRKKSPDISEG 239
            F+VDH+KGF+++EADK+ D+ EACK L GIY TR+  +P  E  +L +V+KK+  +SEG
Sbjct: 184 VFSVDHVKGFIFIEADKEHDVLEACKSLVGIYATRMVLLPKAETPNLLTVQKKTKKVSEG 243

Query: 240 MRARIKSGNYKGDLPQVAAVS---KKTTVKLIPRVDLQALAAKFGGGNSRQKTAIAAPRL 296
             AR+K+G YKGDL Q+ AVS    K  +KLIPR+D+QAL  K+GGG + QK    APRL
Sbjct: 244 TWARVKNGKYKGDLAQIVAVSDTRNKALIKLIPRIDIQALTQKYGGGVTVQKGQTPAPRL 303

Query: 297 ISSSELDEFRPLIQLKRDRDTGKVFEVLDGMMFKDGFVYKKVSPDSLSLWGVVPTEEELL 356
           ISSSEL+EFRPLIQ++RDRDTG  FE LD +M KDG++YKKVS DS+S WGV+PT++ELL
Sbjct: 304 ISSSELEEFRPLIQVRRDRDTGITFEHLDSLMLKDGYLYKKVSLDSISSWGVIPTKDELL 363

Query: 357 KFGTSENNESTDLEWLSQLYGDSKKKRVV-----------------------RGADXXXX 393
           KF   +  E+ D+EW+S++YG+ +KK+++                       +G      
Sbjct: 364 KFTPVDRKETGDVEWISEIYGEERKKKILPTCREGGKGEGSGGGKGEGSGGGKGEGSRGG 423

Query: 394 XXXXXXXXXVVNGFELNDLVCFGKKDFGVIVSM-DKEDCYKILKEGSDGPVAVTLERHQI 452
                      + +EL +LVCF +KDFG+IV + DK D YK+LKEG DGPV VT+ + ++
Sbjct: 424 KGEGSSDFKSESSYELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVGKKEM 483

Query: 453 KSGLFDLKLTAQDRHSKTILVNDNVRVLEGPSKDKQGIVKHIYRGIVFLYNEIEEENCGY 512
           ++G FD K TA D + K I VND V++ +GPS+ KQG+V+ +YRGI+FLY+E EEEN GY
Sbjct: 484 QNGPFDSKFTALDLNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEENGGY 543

Query: 513 FTAKSSVCEKVKHGVADCIGKDGEPGPLIFEDPLEDPPTSPRSPLSLKKPWQARENNREF 572
           F  KS  CEKVK    +   K G      FED +    +SP+SPLS +K WQ RE     
Sbjct: 544 FCCKSQSCEKVKLFTEESNEKTGGFDGTAFEDFV----SSPKSPLSPEKEWQPRERYNSS 599

Query: 573 NRGDQDSLFAIGQTLRIRIGPLKGYLCRVIAIRRSDVTVKLDSQQKVLTVKSEHLSEVQG 632
           N+GD  S ++IGQ LRIR+GPLKGYLCRVIA+R SDVTVKLDSQ K+ TVKSEHL+EV+ 
Sbjct: 600 NQGDIGSTYSIGQKLRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRD 659

Query: 633 KXXXXXXXXXXXXXXLKPFDLLGTE 657
           +               +PF +LGTE
Sbjct: 660 RNTVLSTSGDAGTGSFQPFGMLGTE 684


>AT4G08350.1 | Symbols: GTA02, GTA2 | global transcription factor
           group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041
          Length = 1041

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/323 (38%), Positives = 188/323 (58%), Gaps = 21/323 (6%)

Query: 74  TMLNDTNASAKSQSRPAFVPKEEVVD--EEFDRFLEERYAGGSKFSHFADEYDDKP--MD 129
           T L D     + + R  F+P++E  +  E+ +R ++ER++     S   +EYD++   ++
Sbjct: 119 TDLPDERGDRRYERR--FLPRDENDEDVEDLERRIQERFS-----SRHHEEYDEEATEVE 171

Query: 130 PSSMHPGAKEVTPAIWKVKCTVGRERLSAFCLMQKFADMKKLGTNLKLISAFAVDHMKGF 189
             ++ P  ++  P +W VKC +GRER  A CLMQKF D    G +L++ S  A+DH+K F
Sbjct: 172 QQALLPSVRD--PKLWMVKCAIGREREVAVCLMQKFIDR---GADLQIRSVVALDHLKNF 226

Query: 190 VYMEADKQCDINEACKGLTGIYVT-RVQPVPPNEVYHLFSVRKKSPDISEGMRARIKSGN 248
           +Y+EADK+  + EA KG+  IY   ++  VP  E+  + SV  K+ D+S     R+K G 
Sbjct: 227 IYVEADKEAHVKEAIKGMRNIYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGT 286

Query: 249 YKGDLPQVA---AVSKKTTVKLIPRVDLQALAAKFGGGN-SRQKTAIAAPRLISSSELDE 304
           YKGDL +V     V ++ TVKLIPR+DLQALA+K  G   S++K  +  PR ++  E  E
Sbjct: 287 YKGDLAKVVDVDNVRQRVTVKLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARE 346

Query: 305 FRPLIQLKRDRDTGKVFEVLDGMMFKDGFVYKKVSPDSLSLWGVVPTEEELLKFGTSENN 364
               ++ +RD  TG  FE + GM+FKDGF YK+VS  S+++  V PT +EL KF     N
Sbjct: 347 LHIRVERRRDHMTGDYFENIGGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSEN 406

Query: 365 ESTDLEWLSQLYGDSKKKRVVRG 387
              D   LS L+ + KK   ++G
Sbjct: 407 GEGDFGGLSTLFANRKKGHFMKG 429



 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 129/260 (49%), Gaps = 13/260 (5%)

Query: 375 LYGDSKKKRVVRGADXXXXXXXXXXXXXVVNGFELNDLVCFGKKDFGVIVSMDKEDCYKI 434
           +  D+ K+ V   AD              +  +EL+DLV      FGVI+ ++ E  +++
Sbjct: 508 ILSDTTKEHVRVFADHVVESSEVTTGVTKIGDYELHDLVLLDNLSFGVIIRLENE-AFQV 566

Query: 435 LKEGSDGPVAVTLERHQIKSGLFDLKLTAQDRHSKTILVNDNVRVLEGPSKDKQGIVKHI 494
           LK   D P    ++  +IK  L + K+  QDR+   I V D+VRV+EGPSK KQG VKHI
Sbjct: 567 LKGVPDRPEVALVKLREIKCKL-EKKINVQDRYKNVIAVKDDVRVIEGPSKGKQGPVKHI 625

Query: 495 YRGIVFLYNEIEEENCGYFTAKSSVCEKVKHGVADCIGKDGEPGPLIFEDPLEDPPTSPR 554
           Y+G++F+Y+    E+ G+  AK + C  V    +      G+   L      + P   P 
Sbjct: 626 YKGVLFIYDRHHLEHAGFICAKCTSCIVVGGSRSGANRNGGD--SLSRYGNFKAPAPVPS 683

Query: 555 SPLSLKKPWQARENN-----REFNRGDQDSLFAIGQTLRIRIGPLKGYLCRVIAIRRSDV 609
           SP   ++      NN             DSL  +G T++IR+GP KGY   V+ ++ + V
Sbjct: 684 SPGRFQRGRGGGYNNSGGRHGGGRGRGDDSL--LGTTVKIRLGPFKGYRGPVVEVKGNSV 741

Query: 610 TVKLDSQQKVLTVKSEHLSE 629
            V+L  + K++TV    +S+
Sbjct: 742 RVEL--EMKIVTVDRGAISD 759


>AT2G34210.1 | Symbols:  | Transcription elongation factor Spt5 |
           chr2:14445938-14450522 FORWARD LENGTH=989
          Length = 989

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 171/303 (56%), Gaps = 12/303 (3%)

Query: 90  AFVPKEEVVDEEFDRFLEERYAGGSKFSHFADEYDDKPMDPSSMHPGAKEVTPAIWKVKC 149
            F P EE VDE   R LE      +K  +  D+ +D  +D  ++ P  ++  P +W VKC
Sbjct: 121 GFHPHEEDVDELEKRTLERLSTKYAKDDYELDDVND--VDQQALLPSVRD--PKLWLVKC 176

Query: 150 TVGRERLSAFCLMQKFADMKKLGTNLKLISAFAVDHMKGFVYMEADKQCDINEACKGLTG 209
            +GRER  A CLMQK  D    G+  K+ SA A+DH++ +VY+EAD +  + EA KG+  
Sbjct: 177 AIGREREVAVCLMQKIVDR---GSEFKIRSAIALDHLQNYVYIEADMEAHVKEAIKGMRN 233

Query: 210 IYVT-RVQPVPPNEVYHLFSVRKKSPDISEGMRARIKSGNYKGDLPQVA---AVSKKTTV 265
           IY   ++  VP  E+  + SV  K+ D+S     R+K G YKGDL QV     V K+ TV
Sbjct: 234 IYANQKILLVPIKEMTAVLSVESKAIDLSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTV 293

Query: 266 KLIPRVDLQALAAKFGGGNSRQKTAIAAP-RLISSSELDEFRPLIQLKRDRDTGKVFEVL 324
           KLIPR+DLQALA K  G  + +K A A P R ++  E  E    ++ +RD  TG  FE +
Sbjct: 294 KLIPRIDLQALANKLEGTENVKKKAFAPPPRFMNIDEARELHIRVEHRRDPMTGDYFENI 353

Query: 325 DGMMFKDGFVYKKVSPDSLSLWGVVPTEEELLKFGTSENNESTDLEWLSQLYGDSKKKRV 384
            GM+FKDGF+YKKVS  S++   V PT +EL +F     N   D    S L+ + KK   
Sbjct: 354 GGMLFKDGFLYKKVSTKSIAAQNVTPTFDELERFKRPNENGEIDFVDESTLFANRKKGHF 413

Query: 385 VRG 387
           ++G
Sbjct: 414 MKG 416



 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 31/262 (11%)

Query: 375 LYGDSKKKRVVRGADXXXXXXXXXXXXXVVNGFELNDLVCFGKKDFGVIVSMDKEDCYKI 434
           +  D+ K+ +   AD              +  +EL+DLV      FGVI+ +D E   +I
Sbjct: 495 ILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYELHDLVILSDFSFGVILKLDSE-AIQI 553

Query: 435 LKEGSDGPVAVTLERHQIKSGLFDLKLTAQDRHSKTILVNDNVRVLEGPSKDKQGIVKHI 494
           LK   D      ++  +IK  ++  K+  QDR+   + V D VRV+EGPSK KQG V  I
Sbjct: 554 LKGVPDSSEVSIVKASEIKYKIWK-KINVQDRYKNVVAVKDVVRVIEGPSKGKQGPVVQI 612

Query: 495 YRGIVFLYNEIEEENCGYFTAKSSVCEKVKHGVADCIGKDGEPGPLIFEDPLEDPPTSPR 554
           Y+G++F+++    E+ G+   + S C                   ++     + P   P 
Sbjct: 613 YKGVLFIHDRHNLEHTGFICTRCSSC-------------------VLAGGNFKTPALVPP 653

Query: 555 SPLSLKK------PWQARENNREFNRGDQDSLFAIGQTLRIRIGPLKGYLCRVIAIRRSD 608
           SP   ++      P     +     R   D L  +G  ++IR+GP KGY  R++ ++  D
Sbjct: 654 SPRRFQRADMGYNPGAGGRHQGGRGRRGDDHL--VGTYVKIRLGPFKGYSGRLVEVK--D 709

Query: 609 VTVKLDSQQKVLTVKSEHLSEV 630
             V+++ + K++TV+ + +S++
Sbjct: 710 KLVRVELEAKIVTVERKAISDM 731