Miyakogusa Predicted Gene
- Lj5g3v2219240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2219240.1 tr|B6TA69|B6TA69_MAIZE Glycine-rich RNA-binding
protein 7 OS=Zea mays PE=2 SV=1,41.03,2e-18,RNA-binding domain,
RBD,NULL; RRM,RNA recognition motif domain; ZF_CCHC,Zinc finger,
CCHC-type; PRED,CUFF.56943.1
(284 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 180 1e-45
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 180 1e-45
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 166 2e-41
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 117 7e-27
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 91 8e-19
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 90 2e-18
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 90 2e-18
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 90 2e-18
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 90 2e-18
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 79 3e-15
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 79 3e-15
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 77 1e-14
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 2e-14
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 2e-14
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 76 3e-14
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 3e-14
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 75 4e-14
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 1e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 1e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 74 1e-13
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 74 1e-13
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 74 2e-13
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 74 2e-13
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 74 2e-13
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 73 2e-13
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 4e-13
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 72 5e-13
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 8e-13
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 1e-12
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 1e-12
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 1e-12
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 4e-12
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 69 5e-12
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 6e-12
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 8e-12
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 67 9e-12
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 67 1e-11
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 1e-11
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 66 2e-11
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 66 3e-11
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 4e-11
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 6e-11
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 6e-11
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 7e-11
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 9e-11
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 64 1e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 64 1e-10
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 3e-10
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 3e-10
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 3e-10
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 3e-10
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 3e-10
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 3e-10
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 7e-10
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 7e-10
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 60 1e-09
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 60 2e-09
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 60 2e-09
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 60 2e-09
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 60 2e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 6e-09
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 58 7e-09
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 8e-09
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 56 2e-08
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM... 56 3e-08
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 56 3e-08
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 56 3e-08
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 55 5e-08
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 55 5e-08
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 55 5e-08
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 55 7e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 55 8e-08
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 54 8e-08
AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 54 9e-08
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 54 9e-08
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 54 1e-07
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin... 54 1e-07
AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 54 2e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 54 2e-07
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 54 2e-07
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 54 2e-07
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 53 2e-07
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 53 2e-07
AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 52 4e-07
AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 6e-07
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 6e-07
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 6e-07
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 6e-07
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 52 7e-07
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 51 8e-07
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 51 8e-07
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 51 1e-06
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 51 1e-06
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 50 1e-06
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 50 2e-06
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 50 2e-06
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 48 8e-06
AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 48 8e-06
AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 48 8e-06
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 48 8e-06
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 48 1e-05
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-05
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 98/129 (75%), Gaps = 8/129 (6%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
E+RIFVGGLSWDVTERQLE FDRYGKI ECQIM+ RDTGRPRGFGFITF DRRG +DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 66 KEMHGREIGDRIISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDCFKCGR 125
K MHGRE+G+++ISVNKA+PK+GG+D DQ +D+CFKC R
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQ--------LKKGGGYSSRGKGTEDECFKCRR 122
Query: 126 PGHWARDCP 134
PGHWARDCP
Sbjct: 123 PGHWARDCP 131
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 98/129 (75%), Gaps = 8/129 (6%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
E+RIFVGGLSWDVTERQLE FDRYGKI ECQIM+ RDTGRPRGFGFITF DRRG +DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 66 KEMHGREIGDRIISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDCFKCGR 125
K MHGRE+G+++ISVNKA+PK+GG+D DQ +D+CFKC R
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQ--------LKKGGGYSSRGKGTEDECFKCRR 122
Query: 126 PGHWARDCP 134
PGHWARDCP
Sbjct: 123 PGHWARDCP 131
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 100/144 (69%), Gaps = 8/144 (5%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
MA+KE +RIFVGGLS +VT+R LE AF R+G IL+CQIM+ERDTGR RGFGFITFADRR
Sbjct: 1 MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGGDDADQXXX--------XXXXXXXXXXXXXXX 112
M+++I+EMHGR+ GDR+ISVN+A+PK+G DD +
Sbjct: 61 MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120
Query: 113 XXXXQDDCFKCGRPGHWARDCPLA 136
+D+CFKCGR GHWARDCP A
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSA 144
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 82/134 (61%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+ E R F+GGL+W ++R L AF++YG ++E ++++++ +GR RGFGFITF +++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDC 120
M++AI M+G ++ R I+V+KAQP GG D DC
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDC 120
Query: 121 FKCGRPGHWARDCP 134
FKCG+PGH+AR+CP
Sbjct: 121 FKCGKPGHFARECP 134
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 63/87 (72%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S+ E R FVGGL+W + L+ F ++G +++ +I+ +R++GR RGFGF+TF D + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 63 DAIKEMHGREIGDRIISVNKAQPKMGG 89
DAI+EM+G+E+ R+I+VN+AQ + G
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGSG 88
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 61/82 (74%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S+ E R FVGGL+W + L+ F ++G +++ +I+ +R++GR RGFGF+TF D + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 63 DAIKEMHGREIGDRIISVNKAQ 84
DAI+EM+G+E+ R+I+VN+AQ
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 61/82 (74%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S+ E R FVGGL+W + L+ F ++G +++ +I+ +R++GR RGFGF+TF D + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 63 DAIKEMHGREIGDRIISVNKAQ 84
DAI+EM+G+E+ R+I+VN+AQ
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 1 MASKE-ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRR 59
MAS + E R FVGGL+W +R LE AF +YG +++ +I+ +R+TGR RGFGF+TF D +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 60 GMEDAIKEMHGREIGDRIISVNKAQ 84
M+DAI+ M+G+++ R I+VN+AQ
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 1 MASKE-ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRR 59
MAS + E R FVGGL+W +R LE AF +YG +++ +I+ +R+TGR RGFGF+TF D +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 60 GMEDAIKEMHGREIGDRIISVNKAQ 84
M+DAI+ M+G+++ R I+VN+AQ
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+++FVGGLSW + L+ AF +G++ E ++ +R+TGR RGFGF++F+ +AIK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 67 EMHGREIGDRIISVNKAQPK 86
EM G+E+ R I VN A +
Sbjct: 95 EMDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+++FVGGLSW + L+ AF +G++ E ++ +R+TGR RGFGF++F+ +AIK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 67 EMHGREIGDRIISVNKAQPK 86
EM G+E+ R I VN A +
Sbjct: 95 EMDGKELNGRQIRVNLATER 114
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 54/78 (69%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+++F+GG+++ + E L AF +YG++++ +++++R+TGR RGFGF+TF AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 67 EMHGREIGDRIISVNKAQ 84
+ GR++ R++ VN A
Sbjct: 100 ALDGRDLHGRVVKVNYAN 117
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L+ F +G+++E I+ +R TGR RGFGF+ FAD E I E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R++ KA P+
Sbjct: 67 KH--NIDGRLVEAKKAVPR 83
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA-IK 66
+IFVGGL VTE + F+++G + +M + +T RPRGFGFIT+ +E +K
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 169 TFH--ELNGKMVEVKRAVPK 186
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L+ F +G+++E I+ +R TGR RGFGF+ FAD E I E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R++ KA P+
Sbjct: 67 KH--NIDGRLVEAKKAVPR 83
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA-IK 66
+IFVGGL VTE + F+++G + +M + +T RPRGFGFIT+ +E +K
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 169 TFH--ELNGKMVEVKRAVPK 186
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IFV G WD T+ L+ AF+ YG+I EC ++M++DTGR +G+GF+ F R+G +A+K
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 69 HGREIGDRIISVNKAQPKMG 88
R + +RI+ N A K G
Sbjct: 470 EKR-MYNRIVVCNLASEKPG 488
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IFV GL WD T L+ AF+ YG+I EC ++M++DTGR +GFGF+ F R+G A+K
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 69 HGREIGDRIISVNKAQPKMGGDDADQ 94
R + +R +S A+P G +Q
Sbjct: 225 EKR-MYNRTVSCLPARPFNSGKPREQ 249
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R++VG L WDV +LE F +GK++E +++ +R+TGR RGFGF+T +D + +AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 68 MHGREIGDRIISVNKAQ 84
+ G+ + R I VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 52/82 (63%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
EE ++FVG L++DV + L F++ G + +++ R+T + RGFGF+T + E A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+++ + ++ R+++VNKA P+
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPR 229
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
++F+GGLSW + L AF +G +++ +++++R+TGR RGFGF+ F D AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 66 KEMHGREIGDRIISVNKAQ 84
EM G+E+ R I VN A
Sbjct: 94 SEMDGKELNGRHIRVNPAN 112
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
++F+GGLSW + L AF +G +++ +++++R+TGR RGFGF+ F D AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 66 KEMHGREIGDRIISVNKAQ 84
EM G+E+ R I VN A
Sbjct: 94 SEMDGKELNGRHIRVNPAN 112
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
++F+GGLSW + L AF +G +++ +++++R+TGR RGFGF+ F D AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 66 KEMHGREIGDRIISVNKAQ 84
EM G+E+ R I VN A
Sbjct: 94 SEMDGKELNGRHIRVNPAN 112
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+++F+GGLS+ TE+ L AF + G+++E QI+M+R + R +GFGF+TFA + A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 67 EMHGREIGDRIISVN--KAQPKMGG 89
E +G+++ R I V+ KA+ +GG
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQSLGG 118
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L+ F +YG ++E IM +R TGR RGFGFI FAD E I +
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 73 KH--IIDGRTVEAKKAVPR 89
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL +TE + ++ FD++G I + +M + +T RPRGFGFITF ++ + K
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 179
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 180 TFH--ELNGKMVEVKRAVPK 197
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GGLSW + L AF +G +++ +++++R+TGR RGFGF+ F D AI E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 68 MHGREIGDRIISVNKAQ 84
M G+E+ R I VN A
Sbjct: 96 MDGKELNGRHIRVNPAN 112
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L+ F +YG ++E IM +R TGR RGFGFI FAD E I +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 76 KH--IIDGRTVEAKKAVPR 92
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL +TE + ++ FD++G I + +M + +T RPRGFGFITF ++ + K
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 183 TFH--ELNGKMVEVKRAVPK 200
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
NR++VG LSW V + LE+ F+ GK++E +++ +RD+GR +GFGF+T + + ++ AI
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 67 EMHGREIGDRIISVNKAQ 84
++G ++ R I V++A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVG LS++V QL F+ G + +++ ++ TGR RGFGF+T + +E A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 68 MHGREIGDRIISVNKAQP 85
+G E R + VN P
Sbjct: 160 FNGYEFEGRPLRVNAGPP 177
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
NR++VG LSW V + LE+ F+ GK++E +++ +RD+GR +GFGF+T + + ++ AI
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 67 EMHGREIGDRIISVNKAQ 84
++G ++ R I V++A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVG LS++V QL F+ G + +++ ++ TGR RGFGF+T + +E A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 68 MHGREIGDRIISVNKAQP 85
+G E R + VN P
Sbjct: 160 FNGYEFEGRPLRVNAGPP 177
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
NR++VG LSW V + LE+ F+ GK++E +++ +RD+GR +GFGF+T + + ++ AI
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 67 EMHGREIGDRIISVNKAQ 84
++G ++ R I V++A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVG LS++V QL F+ G + +++ ++ TGR RGFGF+T + +E A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 68 MHGREIGDRIISVNKAQP 85
+G E R + VN P
Sbjct: 160 FNGYEFEGRPLRVNAGPP 177
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 54/78 (69%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
NR++VG LSW V + LE F GK++E +++ +RD+GR +GFGF+T+ + +++AIK
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 67 EMHGREIGDRIISVNKAQ 84
+ G ++ R I V++A+
Sbjct: 264 SLDGADLDGRQIRVSEAE 281
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVG L ++V QL F+ G + +++ ++ TGR RGFGF+T + +E A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 68 MHGREIGDRIISVNKAQP 85
+G E+ R + VN P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
NR++VG LSW V + LE+ F+ GK++E +++ +RD+GR +GFGF+T + + ++ AI
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 67 EMHGREIGDRIISVNKAQ 84
++G ++ R I V++A+
Sbjct: 338 SLNGADLDGRQIRVSEAE 355
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFA 56
++FVG LS++V QL F+ G + +++ ++ TGR RGFGF+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 148
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ ++F+GG+SWD E L F +G++L+ +M E+ TGRPRGFGF+ F+D ++
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 65 IKEMHGREIGDRIISVNKA 83
+++ H I +R + V +A
Sbjct: 64 LQDKH--HIDNRDVDVKRA 80
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A+ +IFVGGL +T + F+ YG + + IM+++ T RPRGFGF++F D
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDS 163
Query: 62 EDAIKEMHGREIGDRIISVNKAQPK 86
D + ++ + + V +A PK
Sbjct: 164 VDLVLHKTFHDLNGKQVEVKRALPK 188
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S+ E R FVGGL+W + L+ F ++G +++ +I+ +R++GR RGFGF+TF D + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 63 DAIKEMH 69
DAI+EM+
Sbjct: 62 DAIEEMN 68
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVGG+SW+ T + F ++G++++ IM +R TG PRGFGF+TFAD E ++E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 68 MHGREIGDRIISVNKAQPK 86
H I DR + + + P+
Sbjct: 127 DH--VIDDRKVDLKRTLPR 143
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A + +IFVGGL + E +L++ F YG I+E QIM + TGR RGFGF+TF +
Sbjct: 152 AVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV 211
Query: 62 EDAIKEMHGREIGDRIISVNKAQPKMGGDD 91
+ + E+GD+ + + +A+PK G D
Sbjct: 212 DRLFSDGKVHELGDKQVEIKRAEPKRTGRD 241
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M + N ++VGGL +D+TE + F YG +L +I+ +R R + +GF+TF++RR
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRS 59
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMG 88
+DAI++M G+ IG R + VN + G
Sbjct: 60 ADDAIEDMDGKSIGGRAVRVNDVTTRGG 87
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F YG ++E IM +R TGR RGFGFI FAD E I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 67 KH--IIDGRTVEAKKAVPR 83
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL +TE + ++ FD++G I + +M + +T RPRGFGFITF D D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V +A PK
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F YG ++E IM +R TGR RGFGFI FAD E I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 67 KH--IIDGRTVEAKKAVPR 83
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL +TE + ++ FD++G I + +M + +T RPRGFGFITF D D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V +A PK
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F YG ++E IM +R TGR RGFGFI FAD E I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 67 KH--IIDGRTVEAKKAVPR 83
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL +TE + ++ FD++G I + +M + +T RPRGFGFITF D D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V +A PK
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F YG ++E IM +R TGR RGFGFI FAD E I +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 67 KH--IIDGRTVEAKKAVPR 83
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL +TE + ++ FD++G I + +M + +T RPRGFGFITF D D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V +A PK
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
+ E+++FVG LSW VT L AF G ++ +++ + DTGR RG+GF+ ++ + ME
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 64 AIKEMHGREIGDRIISVNKAQPK 86
A++ + G E+ R I VN AQ K
Sbjct: 234 ALESLDGFELEGRAIRVNLAQGK 256
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ L FD+YG ILE ++ +++TGR +G+GF+TF A RR
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 63 DAIKEMHGREIGDRIISVNKAQPKM 87
D + GR + S+ +++P M
Sbjct: 84 DPTPIIDGRRANCNLASLGRSRPPM 108
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ L FD+YG ILE ++ +++TGR +G+GF+TF A RR
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Query: 63 DAIKEMHGREIGDRIISVNKAQPKM 87
D + GR + S+ +++P M
Sbjct: 84 DPTPIIDGRRANCNLASLGRSRPPM 108
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E ++F+GG+SW+ +E +L F +G++LE IM +R TGR RGFGF+ FAD E
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ H I +I+ KA P+
Sbjct: 64 VLLKH--IIDGKIVEAKKAVPR 83
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL+ VTE + + F ++G I + +M + T RPRGFGFI++ ++ +++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V A PK
Sbjct: 167 TF-HELNGKMVEVKLAVPK 184
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E ++F+GG+SW+ +E +L F +G++LE IM +R TGR RGFGF+ FAD E
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ H I +I+ KA P+
Sbjct: 64 VLLKH--IIDGKIVEAKKAVPR 83
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL+ VTE + + F ++G I + +M + T RPRGFGFI++ ++ +++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V A PK
Sbjct: 167 TF-HELNGKMVEVKLAVPK 184
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IF+GGL D T F +YG+I + IM +R TG+PRGFGFITFAD ++ I++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 68 MHGREIGDRIISVNKAQPKMGGDDADQ 94
H I + + + + PK G + +
Sbjct: 80 TH--VINGKQVEIKRTIPKGAGGNQSK 104
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGG+ VTE +L+ F +YG ++E Q++ + +T R RGFGF+ F +++ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 68 MHGREIGDRIISVNKAQPK 86
+ ++ D + + KA+PK
Sbjct: 170 GNMIDMADTQVEIKKAEPK 188
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
RI+VG L WDV +LE F +GK+++ +++ +R+TGR RGFGF+ ++ + AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 68 MHGREIGDRIISVNKAQ 84
+ G+ + R I VN A+
Sbjct: 268 LDGQNLEGRAIKVNVAE 284
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
EE ++FVG L +DV + L F++ G + +++ RDT + RGFGF+T + E A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+++ + E+ R ++VN+A P+
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPR 192
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ L F++YG+ILE ++ +++TGR +G+GF+TF A RR
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Query: 63 DAIKEMHGREIGDRIISVNKAQPKM 87
D + GR + S+ + +P +
Sbjct: 84 DPTPIIDGRRANCNLASLGRPRPPL 108
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ ++FVGG+SW+ E +L F YG++ + +M ++ TGRPRGFGF+ F+D ++
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 65 IKEMHGREIGDRIISVNKA 83
++E H I R + V +A
Sbjct: 64 LQEKH--SIDTREVDVKRA 80
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A + +IFVGGL +T+ + F+ YG + + IM ++ T RPRGFGF++F D
Sbjct: 105 AYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDA 163
Query: 62 EDAIKEMHGREIGDRIISVNKAQPK 86
D++ ++ + + V +A PK
Sbjct: 164 VDSVLHKTFHDLSGKQVEVKRALPK 188
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL W+ T L F+ YG+I EC +++++ TG+ +GFGF+ F R+G ++A+KE
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 68 MHGREIGDRIISVNKAQ--PKMGGDDADQ 94
R I +R + A P G DQ
Sbjct: 165 PKKR-ILNRTATCQLASMGPAASGKGHDQ 192
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL W+ T L F+ YG+I EC +++++ TG+ +GFGF+ F R+G ++A+KE
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 68 MHGREIGDRIISVNKAQ--PKMGGDDADQ 94
R I +R + A P G DQ
Sbjct: 165 PKKR-ILNRTATCQLASMGPAASGKGHDQ 192
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E ++F+GG+SW+ +E +L F +G++LE IM +R TGR RGFGF+ FAD E
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 65 IKEMH---GREIGDRII 78
+ H G+ + D I+
Sbjct: 64 VLLKHIIDGKILVDSIV 80
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL+ VTE + + F ++G I + +M + T RPRGFGFI++ ++ +++
Sbjct: 129 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 188
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V A PK
Sbjct: 189 TF-HELNGKMVEVKLAVPK 206
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
++IFVGG+S+ E L AF +YG++++ +I+++R+TGR RGF F+TF +A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM- 92
Query: 67 EMHGREIGDRIISVNKA 83
++ G+++ R I VN A
Sbjct: 93 QLDGQDLHGRRIRVNYA 109
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
AS EE R++VG L + +T +L F G +++ QI+ ++ T R RGFGF+T
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 62 EDAIKEMHGREIGDRIISVNKAQPKMGGDD 91
++A++ + +IG R + VN + GG++
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGEN 200
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++ G L W++T + L+ AF +L +++ ER+TGR RGFGFI+F ++ A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 68 MHGREIGDRIISVNKA 83
M+G E+ R + +N A
Sbjct: 280 MNGVEVEGRALRLNLA 295
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IF+GGL D T F +YG+I + IM +R TG+PRGFGFITFAD ++ I++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 68 MHGREIGDRIISVNKAQPKMGG 89
H I + + + + PK G
Sbjct: 80 TH--VINGKQVEIKRTIPKGAG 99
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGG+ VTE +L+ F +YG ++E Q++ + +T R RGFGF+ F +++ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 68 MHGREIGDRIISVNK 82
+ ++ D +S+ K
Sbjct: 170 GNMIDMADTQVSLYK 184
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
E ++ V G+ WD+ L+ ++G + +C +M +R TGR RGFG++TFA ++A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 66 KEMHGREIGDRIISVNKAQPK 86
K H +G+RI+ V A PK
Sbjct: 62 KGEH--FLGNRILEVKVATPK 80
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
+K+ RIFV + V+E F+RYG+I + + + ++ + RG GFITF+ +E
Sbjct: 87 AKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
D +++ H ++G ++V++A PK
Sbjct: 147 DLMEDTH--DLGGTTVAVDRATPK 168
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
E ++ V G+ WD+ L+ ++G + +C +M +R TGR RGFG++TFA ++A+
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 66 KEMHGREIGDRIISVNKAQPK 86
K H +G+RI+ V A PK
Sbjct: 62 KGEH--FLGNRILEVKVATPK 80
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
+K+ RIFV + V+E F+RYG+I + + + ++ + RG GFITF+ +E
Sbjct: 87 AKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
D +++ H ++G ++V++A PK
Sbjct: 147 DLMEDTH--DLGGTTVAVDRATPK 168
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGME 62
++FVGGL+W+ ++ FD++G+ILE I+ ++ TG+ +G+GF+TF D R +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 63 DAIKEMHGREIGDRIISVNKAQPKM 87
D + GR+ I S + +P
Sbjct: 77 DPNPVIDGRKANCNIASFGRPRPST 101
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 50/78 (64%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+ +FV G+S+ TE L AF +YG++L+ ++M++ RP+GF ++TF+ + E A+
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 67 EMHGREIGDRIISVNKAQ 84
E++ + + R++ ++ +
Sbjct: 81 ELNAQLVDGRVVILDTTK 98
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
+ +IFVGGLS + TE + + F+R+G+ + +M + T RPRGFGF+T+ +
Sbjct: 115 VTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
Query: 62 EDAIKEMHGREIGDRIISVNKAQPKMG 88
E + + + E+ D+ + V +A PK G
Sbjct: 175 E-VVMQSNFHELSDKRVEVKRAIPKEG 200
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVGG++ + +E L+ F RYG +LE + E+ TG+PRGFGF+ FA+ + A+++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 68 MH 69
H
Sbjct: 67 TH 68
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S ++IFVGGLS L+ AF +GKI++ ++++R++G RGFGF+T+
Sbjct: 32 SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91
Query: 63 DAIKEMHGREIGDRIISVNKA 83
+A++ M +E+ RII V+ A
Sbjct: 92 NAMQAMQNKELDGRIIGVHPA 112
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL+ + T + F +YG+I + IM +R TG+PRGFGF+T+AD ++ I++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 68 MH 69
H
Sbjct: 103 NH 104
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGG+ V + + + F ++G++ E QIM + TGR RGFGF+T+ ++ + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 68 MHGREIGDRIISVNKAQPK 86
+ E+ + + KA+PK
Sbjct: 191 GNRIELSGTQVEIKKAEPK 209
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ + ++ +G+ +G+GFI + R G +A+K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 68 MHGREIGDRIISVNKAQ--PKMGG 89
++IG R+ + A P GG
Sbjct: 201 PQ-KKIGSRMTACQLASKGPVFGG 223
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ + ++ +G+ +G+GFI + R G +A+K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 68 MHGREIGDRIISVNKAQ--PKMGG 89
++IG R+ + A P GG
Sbjct: 201 PQ-KKIGSRMTACQLASKGPVFGG 223
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ + ++ +G+ +G+GFI + R G +A+K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 68 MHGREIGDRIISVNKAQ--PKMGG 89
++IG R+ + A P GG
Sbjct: 201 PQ-KKIGSRMTACQLASKGPVFGG 223
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ + ++ +G+ +G+GFI + R G +A+K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 68 MHGREIGDRIISVNKAQ--PKMGG 89
++IG R+ + A P GG
Sbjct: 201 PQ-KKIGSRMTACQLASKGPVFGG 223
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ + ++ +G+ +G+GFI + R G +A+K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 68 MHGREIGDRIISVNKAQ--PKMGG 89
++IG R+ + A P GG
Sbjct: 201 PQ-KKIGSRMTACQLASKGPVFGG 223
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
MA+ E FV GL D E+ L F ++G +++ +I+ +RDTG+ R FGF+TF + +
Sbjct: 1 MATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKS 60
Query: 61 MEDAIKEMHGREIGDRIISV 80
M DAI M E + ++V
Sbjct: 61 MTDAIMIMDVEESRSKCVNV 80
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IFVG LS +VT+ L +F + + ++M ++ TGR RGFGF++F +++ + AI EM
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 69 HGREIGDRIISVNKAQP-KMGGDD 91
+G+ + R I N A GDD
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDD 229
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ ++++ +G+ +G+GFI F R G +A+K+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 68 MHGREIGDRIISVNKA 83
++IG R+ + A
Sbjct: 189 PQ-KKIGTRMTACQLA 203
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD L AF +YG+I +C+ ++++ +G+ +G+GFI F R G +A+K+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 68 MHGREIGDRIISVNKA 83
++IG R+ + A
Sbjct: 189 PQ-KKIGTRMTACQLA 203
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
R++VG LS T+ L AF YG +++ +M +R T R RGFGF+T++ E A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 67 EMHGREIGDRIISV 80
M G+E+ R +SV
Sbjct: 63 GMDGKELNGRRVSV 76
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++++GGLS E L+ AF + + E ++M + TGR RG+GF+ F AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 68 MHGREIGDRIISVNKAQ 84
M+G+E+ ISVN A+
Sbjct: 92 MNGQELNGFNISVNVAK 108
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL+ VTE + + F ++G I + +M + T RPRGFGFI++ ++ +++
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 68 MHGREIGDRIISVNKAQPK 86
E+ +++ V A PK
Sbjct: 107 TF-HELNGKMVEVKLAVPK 124
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+ GLS+ +E+ L AF+ +G+++E +I+M++ + R +G+ F+ + A+KE
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G+ I +I V+ A+ K
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ ++ F+++G+ILE I+ +++TG+ +G+GF+TF + R +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 63 DAIKEMHGREIGDRIIS 79
D + GR+ I S
Sbjct: 77 DPNPVIDGRKANCNIAS 93
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IFVG LS +VT+ L +F + + ++M ++ TGR RGFGF++F +++ + AI EM
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 69 HGREIGDRIISVNKA 83
+G+ + R I N A
Sbjct: 210 NGKWVSSRQIRCNWA 224
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+FVG LS DVT+ L F DRY + +++++ +TGR +G+GF+ F D A+ E
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G +R + V A PK
Sbjct: 264 MNGAYCSNRQMRVGIATPK 282
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IFVGG+ DV + L F ++G+++ +I + + G GF+ FADR+ EDAI+ +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFADRKSAEDAIESL 376
Query: 69 HGREIGDRII 78
+G IG +
Sbjct: 377 NGTVIGKNTV 386
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG LS +VT+ L F Y + ++M ++ TGR RGFGF++F +++ + AI E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 68 MHGREIGDRIISVNKA 83
+ G+ +G R I N A
Sbjct: 200 ITGKWLGSRQIRCNWA 215
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R+FV GLS T +L+ AF +G++++ +++ +RD+GR +GFGF+T+A E A E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 68 MHGREIGDRIISVN 81
M+ + + +I V+
Sbjct: 95 MNAKFLDGWVIFVD 108
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG LS +VT+ L F Y + ++M ++ TGR RGFGF++F +++ + AI E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 68 MHGREIGDRIISVNKA 83
+ G+ +G R I N A
Sbjct: 200 ITGKWLGSRQIRCNWA 215
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GGLSW V E+ L+ AF +G++ E +I ++ +GR RGFGF+ FA+ A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 68 MHGREIGDRIISVNKAQPKMGG 89
M G+ + R + ++ A ++ G
Sbjct: 102 MDGKGLLGRPLRISFALERVRG 123
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ ++ F+++G+ILE I+ +++TG+ +G+GF+TF + R +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 63 DAIKEMHGREIGDRIISV 80
D + GR+ I S
Sbjct: 77 DPNPVIDGRKANCNIASF 94
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGME 62
++FVGGL+WD + + F +YG ILE I+ ++ T R +G+GF+TF D R E
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Query: 63 DAIKEMHGREIGDRIISV 80
D+ ++GR + S+
Sbjct: 77 DSTPIINGRRANCNLASL 94
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M ++FVGGL+W+ + L + F+++G I+E ++ ++ +GR +G+GF+TF D
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 61 MEDA 64
+ A
Sbjct: 61 AQKA 64
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + ++ F+++G+ILE ++ ++ +GR +G+GF+TF A R
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 63 DAIKEMHGREIGDRIISV 80
DA + GR + S+
Sbjct: 73 DATPVIDGRRANCNLASL 90
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M ++FVGGL+W+ + L + F+++G I+E ++ ++ +GR +G+GF+TF D
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 61 MEDA 64
+ A
Sbjct: 61 AQKA 64
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + ++ F+++G+ILE ++ ++ +GR +G+GF+TF A R
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 63 DAIKEMHGREIGDRIISV 80
DA + GR + S+
Sbjct: 73 DATPVIDGRRANCNLASL 90
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
N ++VGGL+ +V E L AF +G I + + +++ + R FGF+TF +R A+
Sbjct: 13 NTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72
Query: 67 EMHGREIGDRIISVNKAQPK 86
M G E+ R+++VN A P+
Sbjct: 73 NMDGAELYGRVLTVNYALPE 92
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+IFVGGL+W+ + F+++G+I+E ++ +++TGR +G+GF+TF + A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 67 EMH 69
M+
Sbjct: 82 NMN 84
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + ++ F+++G+ILE ++ ++ +GR +G+GF+TF A R
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
Query: 63 DAIKEMHGREIGDRIISV 80
DA + GR + S+
Sbjct: 73 DATPVIDGRRANCNLASL 90
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
MA + ++FV LS T++ L F +G+I E +++ + +T RP+GFGFITF
Sbjct: 1 MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60
Query: 61 MEDAIKEMHGREIGDRIISVNKAQ 84
A+K + G+ + R+I V A+
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
+ +++V GLS+ TE L F+++G ++ ++M++ RP+GF F+ + AI
Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
Query: 66 KEMHGREIGDRIISVNKAQPK 86
+ MHG+ + R+I V +A+ +
Sbjct: 136 QGMHGKFLDGRVIFVEEAKTR 156
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+ +F+GGL DV E L + G+I E ++M +RD+G +G+ F+ F + + AI+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 67 EMHGREIGDRIISVNKAQPK 86
E+H +E + I + ++ K
Sbjct: 176 ELHSKEFKGKTIRCSLSETK 195
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+ +F+GGL DV E L + G+I E ++M +RD+G +G+ F+ F + + AI+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 67 EMHGREIGDRIISVNKAQPK 86
E+H +E + I + ++ K
Sbjct: 176 ELHSKEFKGKTIRCSLSETK 195
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+ +F+GGL DV E L + G+I E ++M +RD+G +G+ F+ F + + AI+
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 67 EMHGREIGDRIISVNKAQPK 86
E+H +E + I + ++ K
Sbjct: 156 ELHSKEFKGKTIRCSLSETK 175
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R+F G L +V + L AF R+ +++ ++ TG+ +G+GF++F + + A+KE
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 68 MHGREIGDRIISVNKA 83
M+G+ +G+R I + K+
Sbjct: 198 MNGKYVGNRPIKLRKS 213
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG LS DV++ L F ++Y + +++++ +TGR +G+GF+ F D A+ E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G + R + + A P+
Sbjct: 259 MNGVKCSSRAMRIGPATPR 277
>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
(RRM/RBD/RNP motifs) family protein with retrovirus zinc
finger-like domain | chr3:19834557-19836507 REVERSE
LENGTH=284
Length = 284
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
R++VG LS R LE F RYG++ + + M+RD + F+ F+D R +DA
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRD--VDMKRD------YAFVEFSDPRDADDARY 62
Query: 67 EMHGREI-GDRI-ISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDCFKCG 124
+ GR+ G RI + ++ P+ D+ + CF CG
Sbjct: 63 YLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGR-----------------CFNCG 105
Query: 125 RPGHWARDC 133
GHWARDC
Sbjct: 106 VDGHWARDC 114
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG LS DV++ L F ++Y + +++++ +TGR +G+GF+ F D A+ E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G + R + + A P+
Sbjct: 259 MNGVKCSSRAMRIGPATPR 277
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 46/73 (63%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++VGG+ +D+TE L F +YG+I++ ++ ++ TG+ +GF F+ + D+R A+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 69 HGREIGDRIISVN 81
+G + R I V+
Sbjct: 98 NGALVLGRTIKVD 110
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+ +F+GGL DV E L + G+I E ++M +RD+G +G+ F+ F + + AI+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 67 EMHGREI 73
E+H +E
Sbjct: 176 ELHSKEF 182
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILEC-------QIMMERDTGRPRGFGFITFADRRGM 61
IFVG LS +VT+ L FD + C ++M ++ TGR RGFGF++F +++
Sbjct: 150 IFVGDLSPEVTDAAL---FDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDA 206
Query: 62 EDAIKEMHGREIGDRIISVNKA 83
+ AI EM+G+ + R I N A
Sbjct: 207 QTAINEMNGKWVSSRQIRCNWA 228
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+S+ ++VG L D+ ER++E F +YG +++ + + RP G+ F+ F D R
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARD 57
Query: 61 MEDAIKEMHGRE 72
EDAI HGR+
Sbjct: 58 AEDAI---HGRD 66
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+S+ ++VG L D+ ER++E F +YG +++ + + RP G+ F+ F D R
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARD 57
Query: 61 MEDAIKEMHGRE 72
EDAI HGR+
Sbjct: 58 AEDAI---HGRD 66
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ +VT+ L F + YG + +++++R TGR +G+GF+ FAD A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM+G+ R + + A K
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANK 234
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L+ VT+ LE+ F GK++ ++ T + GFGF+TF+ +E AI
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 68 MHGREIGDRIISVNKA 83
++ + + I VNKA
Sbjct: 238 LNNSLLEGQKIRVNKA 253
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
+S+ R+++G + VT QL + +G + + Q+M ++ +GR R FG FA + +
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFG---FATMKSV 127
Query: 62 EDA---IKEMHGREIGDRIISVN 81
EDA +++++G + R I VN
Sbjct: 128 EDANAVVEKLNGNTVEGREIKVN 150
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L+ VT+ LE+ F GK++ ++ T + GFGF+TF+ +E AI
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 68 MHGREIGDRIISVNKA 83
++ + + I VNKA
Sbjct: 238 LNNSLLEGQKIRVNKA 253
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
+S+ R+++G + VT QL + +G + + Q+M ++ +GR R FG FA + +
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFG---FATMKSV 127
Query: 62 EDA---IKEMHGREIGDRIISVN 81
EDA +++++G + R I VN
Sbjct: 128 EDANAVVEKLNGNTVEGREIKVN 150
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 1 MASKEENR--IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADR 58
M+ E N IFVGGL DVTE L F +G+++ +I + +G GF+ FA+R
Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANR 372
Query: 59 RGMEDAIKEMHGREIGDRII 78
+ E+AI ++G IG +
Sbjct: 373 QSAEEAIGNLNGTVIGKNTV 392
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFD-RYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DV++ L F RY + +++++ +TGR +G+GF+ F D A+ E
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G R + V A PK
Sbjct: 275 MNGAFCSSRQMRVGIATPK 293
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DV++ L F ++Y + +++++ +TGR +G+GF+ F D A+ E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G + R + + A P+
Sbjct: 261 MNGVKCSSRAMRIGPATPR 279
>AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A + +++G +S+ TE QL F R G+I + + ++++T P GF F+ F R
Sbjct: 29 ALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDT 88
Query: 62 EDAIKEMHGREIGDRIISVN 81
EDA+K + G + DR I V+
Sbjct: 89 EDAVKYISGTILDDRPIRVD 108
>AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A + +++G +S+ TE QL F R G+I + + ++++T P GF F+ F R
Sbjct: 29 ALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDT 88
Query: 62 EDAIKEMHGREIGDRIISVN 81
EDA+K + G + DR I V+
Sbjct: 89 EDAVKYISGTILDDRPIRVD 108
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+S+ ++VG L D+ ER++E F +YG +++ + + RP G+ F+ F D R
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVP---PRPPGYAFVEFDDARD 57
Query: 61 MEDAIKEMHGRE 72
EDAI HGR+
Sbjct: 58 AEDAI---HGRD 66
>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15672331 REVERSE LENGTH=290
Length = 290
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 27/130 (20%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
R++VG LS R LE F RYG++ + + M+RD + F+ F D R +DA
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRD--VDMKRD------YAFVEFGDPRDADDAR 61
Query: 66 KEMHGREI-GDRI-ISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDCFKC 123
+ GR+ G RI + ++ P+ G D D CF C
Sbjct: 62 HYLDGRDFDGSRITVEFSRGAPR-GSRDFDSRGPPPGAGR----------------CFNC 104
Query: 124 GRPGHWARDC 133
G GHWARDC
Sbjct: 105 GVDGHWARDC 114
>AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=238
Length = 238
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V GLS VT++ LE F + GK+ C ++ME T RGF F+T + + E IK +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 69 HGREIGDRIISVNKAQPK 86
+ + R I+V +++ K
Sbjct: 133 NQSVLEGRYITVERSRRK 150
>AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=239
Length = 239
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V GLS VT++ LE F + GK+ C ++ME T RGF F+T + + E IK +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 69 HGREIGDRIISVNKAQPK 86
+ + R I+V +++ K
Sbjct: 134 NQSVLEGRYITVERSRRK 151
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGMED 63
+I+VGGL W + L + F R+G+I+ ++ +R+T R +G+GF+TF D R +D
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 64 AIKEMHGREIGDRIISV------NKAQP 85
+ GR ++ V N++QP
Sbjct: 74 PNPTIEGRITNCKLAFVGAKVKPNQSQP 101
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKIL-ECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+F+G L DV E+ L F +G I +IM + DTG RGFGFI++ + AI+
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 67 EMHGREIGDRIISVNKA 83
M G+ + +R I+V+ A
Sbjct: 173 SMTGQYLSNRQITVSYA 189
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L ++++E QL F+ +G + Q+ ++ +TG+ +GFGFI F + A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 68 MHGR-EIGDRIISVNKAQPKMGGDDA 92
++G+ EI R I V+ +G D+
Sbjct: 326 LNGKLEIAGRTIKVSSVSDHIGTQDS 351
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 1 MASKEENR--IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADR 58
MAS R +FVG + +D TE QL G ++ +++ +R+TG+P+G+GF + D
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 59 RGMEDAIKEMHGREIGDRIISVNKAQPKMGGD 90
A + + EI R + V+ A+ G D
Sbjct: 61 ETALSARRNLQSYEINGRQLRVDFAENDKGTD 92
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 375 DRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACA 434
Query: 67 EMHGREIGDRIISVNKA-----QPK 86
++G ++GD+ ++V +A QPK
Sbjct: 435 ALNGIKMGDKTLTVRRAIQGAIQPK 459
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+++ L V + +L+ F YG + C++MM G RGFGF+ +++ A+KEM
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 69 HGREIGDRIISVNKAQ 84
+G+ IG + + V AQ
Sbjct: 403 NGKMIGRKPLYVALAQ 418
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V L ++T+ +L+ F +YG I ++M+ +G R FGF+ F A+++M
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 69 HGREIGDRIISVNKAQPK 86
+G +G+ ++ V +AQ K
Sbjct: 300 NGISLGEDVLYVGRAQKK 317
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+++ L V + +L+ F YG + C++MM G RGFGF+ +++ A+KEM
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 69 HGREIGDRIISVNKAQ 84
+G+ IG + + V AQ
Sbjct: 403 NGKMIGRKPLYVALAQ 418
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V L ++T+ +L+ F +YG I ++M+ +G R FGF+ F A+++M
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 69 HGREIGDRIISVNKAQPK 86
+G +G+ ++ V +AQ K
Sbjct: 300 NGISLGEDVLYVGRAQKK 317
>AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953708-16955127 REVERSE LENGTH=207
Length = 207
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V GLS VT++ LE F + GK+ C ++ME T RGF F+T + + E IK +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 69 HGREIGDRIISVNK 82
+ + R I+V +
Sbjct: 134 NQSVLEGRYITVER 147
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGMED 63
+IFVG L+W T L F+++G++++ ++ E GR +G+GFITF D R +++
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 64 AIKEMHGREIGDRIISV----NKAQPKMGG 89
+ + GR + S N P + G
Sbjct: 73 SKPIIDGRTTNCNLASAGAKQNMNHPNLNG 102
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
N ++V GLS VTER LE F + GK+ + ++++ T RGFGFI+ I+
Sbjct: 75 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIR 134
Query: 67 EMHGREIGDRIISVNKA 83
+ + R+I+V KA
Sbjct: 135 SLDHSVLQGRVITVEKA 151
>AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=244
Length = 244
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V GLS VT++ LE F + GK+ C ++ME T RGF F+T + + E IK +
Sbjct: 88 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 147
Query: 69 HGREIGDRIISVNK 82
+ + R I+V +
Sbjct: 148 NQSVLEGRYITVER 161
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F Y + +++ + TGR +G+GF+ FA+ A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM+G R + ++ A PK
Sbjct: 175 MAEMNGLYCSTRPMRISAATPK 196
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F Y + +++ + TGR +G+GF+ FA+ A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM+G R + ++ A PK
Sbjct: 175 MAEMNGLYCSTRPMRISAATPK 196
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDR-YGKILECQIMMERDTGRPRGFGFITFADRRG 60
A E+ +FVG L+ DVT+ L F Y + +++ +R TGR +G+GF+ FAD
Sbjct: 168 AEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESE 227
Query: 61 MEDAIKEMHGREIGDRIISVNKA 83
A+ EM+G+ R + A
Sbjct: 228 QIRAMTEMNGQYCSSRPMRTGPA 250
>AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=201
Length = 201
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V GLS VT++ LE F + GK+ C ++ME T RGF F+T + + E IK +
Sbjct: 88 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 147
Query: 69 HGREIGDRIISVNK 82
+ + R I+V +
Sbjct: 148 NQSVLEGRYITVER 161
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+EN + V LS D E L F +G + + +++ TG RGFGF+ F R + A
Sbjct: 238 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 297
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
I +++G + I+ V A P+
Sbjct: 298 INKLNGYGYDNLILRVEWATPR 319
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+EN + V LS D E L F +G + + +++ TG RGFGF+ F R + A
Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
I +++G + I+ V A P+
Sbjct: 271 INKLNGYGYDNLILRVEWATPR 292
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 337 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 396
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 397 ALNGIKMGDKTLTVRRA 413
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 419 ALNGIKMGDKTLTVRRA 435
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+EN + V LS D L F +G + C + +++ T RGFGF++F R + A
Sbjct: 204 DENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRA 263
Query: 65 IKEMHGREIGDRIISVNKAQPKMGGD 90
I +++G + I+ V + PK D
Sbjct: 264 INKLNGYGYDNLILRVEWSTPKTQLD 289
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+S+ I+VG L D+ ER++E F +YG +++ + + RP G+ F+ F D R
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKI---PPRPPGYAFVEFEDARD 57
Query: 61 MEDAI 65
+DAI
Sbjct: 58 ADDAI 62
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV L+++ +E +++ F+ YG I ++ ++ T +P+G+ FI + R M+ A K+
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 69 HGREIGDRIISVN 81
G++I R + V+
Sbjct: 200 DGQKIDGRRVLVD 212
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+ ++F+ GL+ D T L F YG + E +++++ TG+ +G+GF+TF G A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLA 132
Query: 65 IKE 67
+KE
Sbjct: 133 LKE 135
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+ ++F+ GL+ D T L F YG + E +++++ TG+ +G+GF+TF G A
Sbjct: 73 SQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLA 132
Query: 65 IKE 67
+KE
Sbjct: 133 LKE 135
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DVT+ L F Y + +++++R TGR +G+GF+ F+D A+ E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 68 MHGREIGDRIISVNKAQPKMG 88
M+G R + + A K G
Sbjct: 217 MNGVPCSTRPMRIGPAASKKG 237
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+S+ I+VG L D+ ER++E F +YG +++ + + RP G+ F+ F D R
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKI---PPRPPGYAFVEFEDARD 57
Query: 61 MEDAI 65
+DAI
Sbjct: 58 ADDAI 62
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGME 62
+I+VGGL W+ L F+++G I+ ++ +R+TGR G+GF+TF D R +
Sbjct: 52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111
Query: 63 DAIKEMHGRE 72
+ + GRE
Sbjct: 112 NPKPVIDGRE 121
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DVT+ L F Y + +++++R TGR +G+GF+ F+D A+ E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 68 MHGREIGDRIISVNKAQPKMG 88
M+G R + + A K G
Sbjct: 217 MNGVPCSTRPMRIGPAASKKG 237
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
N ++V GLS VTER LE F + GK+ + ++++ T RGFGFI+ I+
Sbjct: 45 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIR 104
Query: 67 EMHGREIGDRIISVNK 82
+ + R+I+V K
Sbjct: 105 SLDHSVLQGRVITVEK 120
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+ V GL + +T QLE AF G + C ++ + + RGF F+ FA + + AI+
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 69 HGREIGDRIISVNKA 83
+G +G R I+V +A
Sbjct: 82 NGSTVGGRRITVKQA 96
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A +E + V LS +V E L+ F +G+++ +I M+R PRG G++ F R
Sbjct: 93 AVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADA 152
Query: 62 EDAIKEMHGREIGDRIISVN 81
E A M G +I +++
Sbjct: 153 EKAQLYMDGAQIDGKVVKAT 172
>AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064 FORWARD
LENGTH=200
Length = 200
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+R++VG L VTER+LE F +G + + RP G+ F+ F D R DAI+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVAR-----RPPGYAFLDFEDPRDARDAIR 56
Query: 67 EMHGREIGDRIISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDCFKCGRP 126
+ G+ N + + + ++ C++CG
Sbjct: 57 ALDGK---------NGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGET 107
Query: 127 GHWARDC 133
GH+AR+C
Sbjct: 108 GHFAREC 114
>AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064 FORWARD
LENGTH=200
Length = 200
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+R++VG L VTER+LE F +G + + RP G+ F+ F D R DAI+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVAR-----RPPGYAFLDFEDPRDARDAIR 56
Query: 67 EMHGREIGDRIISVNKAQPKMGGDDADQXXXXXXXXXXXXXXXXXXXXXXQDDCFKCGRP 126
+ G+ N + + + ++ C++CG
Sbjct: 57 ALDGK---------NGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGET 107
Query: 127 GHWARDC 133
GH+AR+C
Sbjct: 108 GHFAREC 114
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V L ++ E +L F ++G ++ ++M +G R FGF+ F A+++M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 69 HGREIGDRIISVNKAQPK 86
+G +GD ++ V +AQ K
Sbjct: 290 NGISLGDDVLYVGRAQKK 307
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A +E + V LS +V E L+ F +G+++ +I M+R PRG G++ F R
Sbjct: 93 AVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADA 152
Query: 62 EDAIKEMHGREIGDRIISVN 81
E A M G +I +++
Sbjct: 153 EKAQLYMDGAQIDGKVVKAT 172
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
++ +FV GLS T L AF ++G++ + +++ +R +G +GFGF+ +A
Sbjct: 52 AEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSA 111
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
I M G+ + +I A+P+
Sbjct: 112 KGIAGMDGKFLDGWVIFAEYARPR 135