Miyakogusa Predicted Gene

Lj5g3v2217210.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2217210.2 Non Chatacterized Hit- tr|Q56X79|Q56X79_ARATH
Putative uncharacterized protein At1g25500
OS=Arabidop,65.52,0.0000002,Choline_transpo,Choline transporter-like;
seg,NULL; CTL2-RELATED,NULL; CTL TRANSPORTER,Choline
trans,CUFF.56942.2
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25500.2 | Symbols:  | Plasma-membrane choline transporter fa...   310   5e-85
AT1G25500.1 | Symbols:  | Plasma-membrane choline transporter fa...   310   9e-85
AT1G25500.3 | Symbols:  | Plasma-membrane choline transporter fa...   281   5e-76

>AT1G25500.2 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr1:8955437-8957793 REVERSE LENGTH=488
          Length = 488

 Score =  310 bits (795), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 167/284 (58%), Positives = 193/284 (67%), Gaps = 4/284 (1%)

Query: 11  EFASIATANQSLAXXXXXXXXXXXEVAVVEESRPWHDVFWXXXXXXXXXXXXXXXXXXXX 70
           ++ASI++ +QSL              AVV ESR WHDVFW                    
Sbjct: 13  DYASISSGDQSLQRSRRSGDG---NRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGL 69

Query: 71  NRFEQENRLNIDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMK 130
           NRF   +RLNID+YT  F EN  GLTE YWPLYA A G+G  + W+W LLLGS A +MMK
Sbjct: 70  NRFRISDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMK 129

Query: 131 FSVHILTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKM 190
            SVHILTTYLAV+SVLCFW +  FWG AF +G+ LQFLYVISV+DRLPFTMLVL+KA+K+
Sbjct: 130 VSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKL 189

Query: 191 VWSLPEVMRVSYAFXXXXXXXXXXXSFGAAGVVASSMGDGGRWWLLVVFSVSLFWTGAVL 250
           VW LP+V+ V++AF           SFGAAGVVASSMGD GRWWLLVV SVSLFWTGAVL
Sbjct: 190 VWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVL 249

Query: 251 CNTVHVIVSGMVFLVLLHGGREAGSISANSLK-KSLQASFTTSF 293
           CNTVHVIVSGMVF VL H G+E  S    S    SL+ + TTSF
Sbjct: 250 CNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 293


>AT1G25500.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr1:8955595-8957793 REVERSE LENGTH=432
          Length = 432

 Score =  310 bits (793), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 167/284 (58%), Positives = 193/284 (67%), Gaps = 4/284 (1%)

Query: 11  EFASIATANQSLAXXXXXXXXXXXEVAVVEESRPWHDVFWXXXXXXXXXXXXXXXXXXXX 70
           ++ASI++ +QSL              AVV ESR WHDVFW                    
Sbjct: 13  DYASISSGDQSLQRSRRSGDG---NRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGL 69

Query: 71  NRFEQENRLNIDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMK 130
           NRF   +RLNID+YT  F EN  GLTE YWPLYA A G+G  + W+W LLLGS A +MMK
Sbjct: 70  NRFRISDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMK 129

Query: 131 FSVHILTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKM 190
            SVHILTTYLAV+SVLCFW +  FWG AF +G+ LQFLYVISV+DRLPFTMLVL+KA+K+
Sbjct: 130 VSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKL 189

Query: 191 VWSLPEVMRVSYAFXXXXXXXXXXXSFGAAGVVASSMGDGGRWWLLVVFSVSLFWTGAVL 250
           VW LP+V+ V++AF           SFGAAGVVASSMGD GRWWLLVV SVSLFWTGAVL
Sbjct: 190 VWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVL 249

Query: 251 CNTVHVIVSGMVFLVLLHGGREAGSISANSLK-KSLQASFTTSF 293
           CNTVHVIVSGMVF VL H G+E  S    S    SL+ + TTSF
Sbjct: 250 CNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 293


>AT1G25500.3 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr1:8955437-8957294 REVERSE LENGTH=430
          Length = 430

 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/219 (66%), Positives = 167/219 (76%), Gaps = 1/219 (0%)

Query: 76  ENRLNIDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMKFSVHI 135
            +RLNID+YT  F EN  GLTE YWPLYA A G+G  + W+W LLLGS A +MMK SVHI
Sbjct: 17  SDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHI 76

Query: 136 LTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKMVWSLP 195
           LTTYLAV+SVLCFW +  FWG AF +G+ LQFLYVISV+DRLPFTMLVL+KA+K+VW LP
Sbjct: 77  LTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLP 136

Query: 196 EVMRVSYAFXXXXXXXXXXXSFGAAGVVASSMGDGGRWWLLVVFSVSLFWTGAVLCNTVH 255
           +V+ V++AF           SFGAAGVVASSMGD GRWWLLVV SVSLFWTGAVLCNTVH
Sbjct: 137 KVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVH 196

Query: 256 VIVSGMVFLVLLHGGREAGSISANSLK-KSLQASFTTSF 293
           VIVSGMVF VL H G+E  S    S    SL+ + TTSF
Sbjct: 197 VIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 235