Miyakogusa Predicted Gene
- Lj5g3v2217210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2217210.1 Non Chatacterized Hit- tr|K3X0L3|K3X0L3_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G01,22.97,0.003,seg,NULL; CTL2-RELATED,NULL; CTL
TRANSPORTER,Choline transporter-like; Choline_transpo,Choline
trans,CUFF.56942.1
(243 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25500.2 | Symbols: | Plasma-membrane choline transporter fa... 256 1e-68
AT1G25500.1 | Symbols: | Plasma-membrane choline transporter fa... 255 2e-68
AT1G25500.3 | Symbols: | Plasma-membrane choline transporter fa... 226 1e-59
>AT1G25500.2 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955437-8957793 REVERSE LENGTH=488
Length = 488
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 153/228 (67%), Gaps = 3/228 (1%)
Query: 11 EFASIATANQSLAXXXXXXXXXXXEVAVVEESRPWHDVFWXXXXXXXXXXXXXXXXXXXX 70
++ASI++ +QSL AVV ESR WHDVFW
Sbjct: 13 DYASISSGDQSLQRSRRSGDG---NRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGL 69
Query: 71 NRFEQENRLNIDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMK 130
NRF +RLNID+YT F EN GLTE YWPLYA A G+G + W+W LLLGS A +MMK
Sbjct: 70 NRFRISDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMK 129
Query: 131 FSVHILTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKM 190
SVHILTTYLAV+SVLCFW + FWG AF +G+ LQFLYVISV+DRLPFTMLVL+KA+K+
Sbjct: 130 VSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKL 189
Query: 191 VWSLPEVMRVSYAFXXXXXXXXXXXSFGAAGVVASSMGDGGRWWLLVV 238
VW LP+V+ V++AF SFGAAGVVASSMGD GRWWLLVV
Sbjct: 190 VWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVV 237
>AT1G25500.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955595-8957793 REVERSE LENGTH=432
Length = 432
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 153/228 (67%), Gaps = 3/228 (1%)
Query: 11 EFASIATANQSLAXXXXXXXXXXXEVAVVEESRPWHDVFWXXXXXXXXXXXXXXXXXXXX 70
++ASI++ +QSL AVV ESR WHDVFW
Sbjct: 13 DYASISSGDQSLQRSRRSGDG---NRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGL 69
Query: 71 NRFEQENRLNIDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMK 130
NRF +RLNID+YT F EN GLTE YWPLYA A G+G + W+W LLLGS A +MMK
Sbjct: 70 NRFRISDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMK 129
Query: 131 FSVHILTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKM 190
SVHILTTYLAV+SVLCFW + FWG AF +G+ LQFLYVISV+DRLPFTMLVL+KA+K+
Sbjct: 130 VSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKL 189
Query: 191 VWSLPEVMRVSYAFXXXXXXXXXXXSFGAAGVVASSMGDGGRWWLLVV 238
VW LP+V+ V++AF SFGAAGVVASSMGD GRWWLLVV
Sbjct: 190 VWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVV 237
>AT1G25500.3 | Symbols: | Plasma-membrane choline transporter
family protein | chr1:8955437-8957294 REVERSE LENGTH=430
Length = 430
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/168 (66%), Positives = 129/168 (76%)
Query: 76 ENRLNIDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMKFSVHI 135
+RLNID+YT F EN GLTE YWPLYA A G+G + W+W LLLGS A +MMK SVHI
Sbjct: 17 SDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHI 76
Query: 136 LTTYLAVISVLCFWAKQIFWGVAFGIGASLQFLYVISVVDRLPFTMLVLQKAVKMVWSLP 195
LTTYLAV+SVLCFW + FWG AF +G+ LQFLYVISV+DRLPFTMLVL+KA+K+VW LP
Sbjct: 77 LTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLP 136
Query: 196 EVMRVSYAFXXXXXXXXXXXSFGAAGVVASSMGDGGRWWLLVVSWFSL 243
+V+ V++AF SFGAAGVVASSMGD GRWWLLVV SL
Sbjct: 137 KVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSL 184