Miyakogusa Predicted Gene

Lj5g3v2193910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2193910.1 Non Chatacterized Hit- tr|I3SUA7|I3SUA7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain; RNA
recognition motif,RNA reco,CUFF.56923.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17720.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   354   4e-98
AT5G46870.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   313   6e-86
AT5G16840.2 | Symbols: BPA1 | binding partner of acd11 1 | chr5:...   278   2e-75
AT5G16840.3 | Symbols: BPA1 | binding partner of acd11 1 | chr5:...   277   6e-75
AT5G16840.1 | Symbols: BPA1 | binding partner of acd11 1 | chr5:...   275   3e-74
AT1G67950.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   228   2e-60
AT1G67950.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   228   3e-60
AT1G67950.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   228   3e-60
AT5G32450.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   211   7e-55
AT1G67950.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   177   7e-45
AT1G14340.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   143   2e-34
AT3G01210.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   122   2e-28

>AT4G17720.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:9862660-9864498 REVERSE LENGTH=313
          Length = 313

 Score =  354 bits (908), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 185/275 (67%), Positives = 223/275 (81%), Gaps = 10/275 (3%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           MT+ T+KVSNVSLGA++RD+KEFFSFSGDI Y+E QS  ER+++AYVTFKD QGAETAVL
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLPVSIALDPDYQVPPAALASSETE--GKGPSGPESALRKAEDVVTSMLAKGF 118
           LSGATIVD  V +++ PDYQ+ P ALAS E +   K P   +S LRKAEDVV+SMLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 119 ILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVRE 178
           ILGKDA+ KAK++DEKHQL+STASAKV+S D+K+G T+KI               ++VRE
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVG-------EKVRE 173

Query: 179 VDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKT 238
           VDQK+QVSEKTKSA A AEQ VS AGSAIMKNRYVLTGATWVTGAF+KVAKAA +VGQK 
Sbjct: 174 VDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKA 233

Query: 239 KEKLESVQEEEKRKVEDQYAHV-LSESPKAAATSE 272
           KEK+   +EE+KRKV D++A V LSESPKAA++++
Sbjct: 234 KEKVGMAEEEDKRKVVDEFARVHLSESPKAASSTQ 268


>AT5G46870.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:19015486-19016990 FORWARD LENGTH=295
          Length = 295

 Score =  313 bits (803), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 178/287 (62%), Positives = 220/287 (76%), Gaps = 16/287 (5%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           M++ T+KVSNVSL A+ERD+KEFFSFSGDI Y+E QS ++ S++AYVTFKD QGAETAVL
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLPVSIALDPDYQVPPAALASSET--EGKGPSGPE----SALRKAEDVVTSML 114
           L+G+TIVD  V++ + PDYQ+PP ALAS E+  E    S P     S  RKAEDVV+ M+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 115 AKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTD 174
           +KGF+LGKDA+ KAK+LDEKHQL+STASA+V+S D+++G TEKI              ++
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKI-------NTGTTVVSE 173

Query: 175 RVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDV 234
           +V+EVDQKFQV+EKTKSA A AEQ VS AGSAIMKNRYVLTGATWVTGAF++V+KAA +V
Sbjct: 174 KVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEV 233

Query: 235 GQKTKEK--LESVQEEEKRKVEDQYAHV-LSESPKAAATSEVHSSKP 278
           GQK KEK  L   +EEEK+KV D+ A V L+ESPKA   SE  S  P
Sbjct: 234 GQKAKEKVGLAEEEEEEKKKVVDEVAIVHLTESPKALDQSEQDSKLP 280


>AT5G16840.2 | Symbols: BPA1 | binding partner of acd11 1 |
           chr5:5536042-5538026 FORWARD LENGTH=260
          Length = 260

 Score =  278 bits (712), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/242 (59%), Positives = 188/242 (77%), Gaps = 14/242 (5%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           ++++KV N+S GA+E DIKEFFSFSG++E +++QS +E S  AYVTFK++QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 62

Query: 63  GATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFILGK 122
           GA+I D  V I L P+Y  PPAA   +ET+    SG ES ++KAEDVV+SMLAKGFILGK
Sbjct: 63  GASIADQSVIIELAPNYS-PPAA-PHAETQ---SSGAESVVQKAEDVVSSMLAKGFILGK 117

Query: 123 DAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVDQK 182
           DAV KAK  DEKH  +STA+A V+S+DQK+GL++K+               ++++ VDQ 
Sbjct: 118 DAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLV-------NEKIKAVDQN 170

Query: 183 FQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEKL 242
           FQV+E+TKS +A AEQ VS+AGSA+MKNRYVLTG +W  GAF++VA+AAG+VGQKTKEK+
Sbjct: 171 FQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV 230

Query: 243 ES 244
           E+
Sbjct: 231 EA 232


>AT5G16840.3 | Symbols: BPA1 | binding partner of acd11 1 |
           chr5:5536042-5538026 FORWARD LENGTH=257
          Length = 257

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 142/244 (58%), Positives = 188/244 (77%), Gaps = 15/244 (6%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           M ++++KV N+S GA+E DIKEFFSFSG++E +++QS++     AYVTFK++QGAETAVL
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVL 57

Query: 61  LSGATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFIL 120
           LSGA+I D  V I L P+Y  PPAA   +ET+    SG ES ++KAEDVV+SMLAKGFIL
Sbjct: 58  LSGASIADQSVIIELAPNYS-PPAA-PHAETQ---SSGAESVVQKAEDVVSSMLAKGFIL 112

Query: 121 GKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVD 180
           GKDAV KAK  DEKH  +STA+A V+S+DQK+GL++K+               ++++ VD
Sbjct: 113 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLV-------NEKIKAVD 165

Query: 181 QKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE 240
           Q FQV+E+TKS +A AEQ VS+AGSA+MKNRYVLTG +W  GAF++VA+AAG+VGQKTKE
Sbjct: 166 QNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKE 225

Query: 241 KLES 244
           K+E+
Sbjct: 226 KVEA 229


>AT5G16840.1 | Symbols: BPA1 | binding partner of acd11 1 |
           chr5:5536042-5538026 FORWARD LENGTH=259
          Length = 259

 Score =  275 bits (703), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 141/242 (58%), Positives = 187/242 (77%), Gaps = 15/242 (6%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           ++++KV N+S GA+E DIKEFFSFSG++E +++QS++     AYVTFK++QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLS 61

Query: 63  GATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFILGK 122
           GA+I D  V I L P+Y  PPAA   +ET+    SG ES ++KAEDVV+SMLAKGFILGK
Sbjct: 62  GASIADQSVIIELAPNYS-PPAA-PHAETQ---SSGAESVVQKAEDVVSSMLAKGFILGK 116

Query: 123 DAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVDQK 182
           DAV KAK  DEKH  +STA+A V+S+DQK+GL++K+               ++++ VDQ 
Sbjct: 117 DAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLV-------NEKIKAVDQN 169

Query: 183 FQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEKL 242
           FQV+E+TKS +A AEQ VS+AGSA+MKNRYVLTG +W  GAF++VA+AAG+VGQKTKEK+
Sbjct: 170 FQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV 229

Query: 243 ES 244
           E+
Sbjct: 230 EA 231


>AT1G67950.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:25478884-25480420 REVERSE LENGTH=278
          Length = 278

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/249 (49%), Positives = 169/249 (67%), Gaps = 20/249 (8%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           +KT+K+SNVSL  S++D+KEFFSFSGDI+YVEM+S  + SQ+AYVTFKDSQGAETA+LL+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 63  GATIVDLPVSIALDPDYQVPPAALA-SSETEGKGPSGPESALRKAEDVVTSMLAKGFILG 121
           GA I DL VSI    +YQ+PP ALA  SE    G S     ++KAEDVV  M+ +G+ LG
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALALDSEHSFNGFS-----VKKAEDVVNIMVGRGYALG 142

Query: 122 KDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVDQ 181
           KDA+ KAK  D++H L S ASA ++S+D K+GL+EK+               +++R++D+
Sbjct: 143 KDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKL-------SIGTTVVNEKLRDIDE 195

Query: 182 KFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEK 241
           ++QV E TKSA A AE+   +A +A+M N YV +GA+W + AF  V KA        KEK
Sbjct: 196 RYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEK 248

Query: 242 LESVQEEEK 250
           +E+  E  K
Sbjct: 249 VENGGEGRK 257


>AT1G67950.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:25478884-25480420 REVERSE LENGTH=279
          Length = 279

 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/250 (49%), Positives = 169/250 (67%), Gaps = 21/250 (8%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           +KT+K+SNVSL  S++D+KEFFSFSGDI+YVEM+S  + SQ+AYVTFKDSQGAETA+LL+
Sbjct: 28  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 87

Query: 63  GATIVDLPVSIALDPDYQVPPAALA--SSETEGKGPSGPESALRKAEDVVTSMLAKGFIL 120
           GA I DL VSI    +YQ+PP ALA  S E    G S     ++KAEDVV  M+ +G+ L
Sbjct: 88  GAVIADLRVSITPAVNYQLPPEALALDSQEHSFNGFS-----VKKAEDVVNIMVGRGYAL 142

Query: 121 GKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVD 180
           GKDA+ KAK  D++H L S ASA ++S+D K+GL+EK+               +++R++D
Sbjct: 143 GKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKL-------SIGTTVVNEKLRDID 195

Query: 181 QKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE 240
           +++QV E TKSA A AE+   +A +A+M N YV +GA+W + AF  V KA        KE
Sbjct: 196 ERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKE 248

Query: 241 KLESVQEEEK 250
           K+E+  E  K
Sbjct: 249 KVENGGEGRK 258


>AT1G67950.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:25478884-25480072 REVERSE LENGTH=279
          Length = 279

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/249 (49%), Positives = 169/249 (67%), Gaps = 20/249 (8%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           +KT+K+SNVSL  S++D+KEFFSFSGDI+YVEM+S  + SQ+AYVTFKDSQGAETA+LL+
Sbjct: 29  VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLT 88

Query: 63  GATIVDLPVSIALDPDYQVPPAALA-SSETEGKGPSGPESALRKAEDVVTSMLAKGFILG 121
           GA I DL VSI    +YQ+PP ALA  SE    G S     ++KAEDVV  M+ +G+ LG
Sbjct: 89  GAVIADLRVSITPAVNYQLPPEALALDSEHSFNGFS-----VKKAEDVVNIMVGRGYALG 143

Query: 122 KDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVDQ 181
           KDA+ KAK  D++H L S ASA ++S+D K+GL+EK+               +++R++D+
Sbjct: 144 KDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKL-------SIGTTVVNEKLRDIDE 196

Query: 182 KFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEK 241
           ++QV E TKSA A AE+   +A +A+M N YV +GA+W + AF  V KA        KEK
Sbjct: 197 RYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA-------VKEK 249

Query: 242 LESVQEEEK 250
           +E+  E  K
Sbjct: 250 VENGGEGRK 258


>AT5G32450.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:12079707-12081317 FORWARD LENGTH=267
          Length = 267

 Score =  211 bits (536), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 161/257 (62%), Gaps = 22/257 (8%)

Query: 2   TIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLL 61
           T ++++V+NVS  A+ER+I EFFSFSGDIE++E+Q    +S+IA+VTF D +  E A+LL
Sbjct: 3   TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLL 62

Query: 62  SGATIVDLPVSIALDPDY-------------QVPPAALASSETEGKGP--SGPESALRKA 106
           SGATIVD  V+I    +Y                P  L  S T+ K        + + KA
Sbjct: 63  SGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKA 122

Query: 107 EDVVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXX 166
           +DVV ++LAKG  LG+DAVNKAK  DEKHQL + ASAKVSS D+++GLTEK+        
Sbjct: 123 QDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKL-------S 175

Query: 167 XXXXXXTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSK 226
                  ++V+ VDQK QVS+KT +A   AE+K++  GSA+  +RYV  GA W +GAFSK
Sbjct: 176 VGISAVNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSK 235

Query: 227 VAKAAGDVGQKTKEKLE 243
           VA+     G KTKEK  
Sbjct: 236 VARVGQVAGSKTKEKFN 252


>AT1G67950.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:25478884-25479778 REVERSE LENGTH=219
          Length = 219

 Score =  177 bits (449), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 139/217 (64%), Gaps = 20/217 (9%)

Query: 35  MQSHDERSQIAYVTFKDSQGAETAVLLSGATIVDLPVSIALDPDYQVPPAALA-SSETEG 93
           M+S  + SQ+AYVTFKDSQGAETA+LL+GA I DL VSI    +YQ+PP ALA  SE   
Sbjct: 1   MRSETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALALDSEHSF 60

Query: 94  KGPSGPESALRKAEDVVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLG 153
            G S     ++KAEDVV  M+ +G+ LGKDA+ KAK  D++H L S ASA ++S+D K+G
Sbjct: 61  NGFS-----VKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMG 115

Query: 154 LTEKIXXXXXXXXXXXXXXTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYV 213
           L+EK+               +++R++D+++QV E TKSA A AE+   +A +A+M N YV
Sbjct: 116 LSEKL-------SIGTTVVNEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYV 168

Query: 214 LTGATWVTGAFSKVAKAAGDVGQKTKEKLESVQEEEK 250
            +GA+W + AF  V KA        KEK+E+  E  K
Sbjct: 169 SSGASWFSNAFGAVTKA-------VKEKVENGGEGRK 198


>AT1G14340.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:4897709-4898776 FORWARD LENGTH=244
          Length = 244

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 22/243 (9%)

Query: 6   IKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLSGAT 65
           ++V+ +S   +  D+ +FFSFSG I+ +++    E++  AYV FKDS   ETAVLL+GAT
Sbjct: 9   VEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETAVLLTGAT 68

Query: 66  IVDLPVSIAL----DPDYQVPPAALASSETEG-------KGPSGPESALRKAEDVVTSML 114
           I+D  V I        ++    A     E E        +       A+ KA++VV  ML
Sbjct: 69  ILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQRSEFNAGEAVTKAQEVVKIML 128

Query: 115 AKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTD 174
           A GF+LGKDA++KAK  DE H +S+ A A+VS ++Q++GLT+KI               +
Sbjct: 129 ATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTDKI-----------FTGLE 177

Query: 175 RVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDV 234
            VR  DQ++ VS+  KSA     +  + A ++++ + Y  +GA W++GA  + AKAA D+
Sbjct: 178 AVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLSGALERAAKAASDL 237

Query: 235 GQK 237
           G +
Sbjct: 238 GTR 240


>AT3G01210.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:72182-73159 FORWARD LENGTH=249
          Length = 249

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 131/256 (51%), Gaps = 47/256 (18%)

Query: 7   KVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLSGATI 66
           +V+N+S  A+E+D+  FFS  G +E VE+      +  AYVTF+D+   + AVLLSGATI
Sbjct: 9   QVTNLSPQATEKDVHRFFSHCGIVELVEITGCQGDALTAYVTFRDAYALDMAVLLSGATI 68

Query: 67  VDLPVSIAL-------------DPDYQVPPA---ALASSETEGKGPSGPESALRKAEDVV 110
           VD  V I++             + DY V      A ASS         P  A+  A+ VV
Sbjct: 69  VDQTVWISVYGVYLHESNNLRQEEDYSVTVTRSDAFASS---------PGEAITVAQQVV 119

Query: 111 TSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXX 170
            +MLAKG++L KDA+ KAK LDE  + SS  + K++ I   LGLT+ I            
Sbjct: 120 QTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQNI-----------Q 168

Query: 171 XXTDRVREVDQKFQVSEKTKSAF----------AVAEQKV-STAGSAIMKNRYVLTGATW 219
              + VR  D+K+  S+ TKSA           A    KV + A ++++ +RY   GA W
Sbjct: 169 SSMELVRSADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYFANGALW 228

Query: 220 VTGAFSKVAKAAGDVG 235
            + A  + AKAA  +G
Sbjct: 229 FSDALGRAAKAAAHIG 244