Miyakogusa Predicted Gene

Lj5g3v2183890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2183890.1 Non Chatacterized Hit- tr|I3S518|I3S518_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,Ribosomal
proteins L15p and L18e,Ribosomal protein L18e/L15P; rplO_bact:
ribosomal protein L15,Ribos,CUFF.56936.1
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25920.1 | Symbols: RPL15 | ribosomal protein L15 | chr3:9491...   214   4e-56

>AT3G25920.1 | Symbols: RPL15 | ribosomal protein L15 |
           chr3:9491268-9492558 REVERSE LENGTH=277
          Length = 277

 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 118/145 (81%)

Query: 63  RFRLDNLGPQPXXXXXXXXXXXXXXXXQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYR 122
           RFRLDNLGPQP                QGASCGFGMRGQKSRSGPG+ RGFEGGQ  LYR
Sbjct: 80  RFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYR 139

Query: 123 RIPKLRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRERRLPL 182
           R+PKLRGIAGGM +GLPKY+ VN++DIE A FQ+GDEVSLE+LK+KG+INPSGRER+LPL
Sbjct: 140 RLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPL 199

Query: 183 KILGEGELSKKLTVKARAFSTSAKE 207
           KILG GELS KLT KARAFST AKE
Sbjct: 200 KILGTGELSMKLTFKARAFSTQAKE 224