Miyakogusa Predicted Gene

Lj5g3v2182440.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2182440.1 Non Chatacterized Hit- tr|B9SLZ4|B9SLZ4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,42.14,2e-16,seg,NULL,CUFF.56953.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   9e-14
AT1G66890.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    46   8e-06

>AT1G68430.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast
           hits to 35 proteins in 6 species: Archae - 0; Bacteria -
           0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr1:25654989-25655429 REVERSE LENGTH=146
          Length = 146

 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 1   MATLQKFKLFALQCG-AVQSPTRSP------MVQLPRPKTTLRALLGLSLTRPPRRREDV 53
           MATLQ+FK    QCG A QSPTRSP      +VQL R KTTL+ LL L+    P RRE  
Sbjct: 1   MATLQRFKFLGTQCGVAAQSPTRSPSPRTSPLVQLRRKKTTLKMLLSLA---SPSRREQQ 57

Query: 54  PSAMEKEKDSQRRQKLKDLFVXXXXXXXXXXXXATPLLGSVAAVGIGVGNSSNMGLARSG 113
           P      KD   R KLKDLFV              P  G      +    +     +R  
Sbjct: 58  PLIHHHHKDVAGR-KLKDLFVSSSSAEEEQEEDERP-KGKTKEEVLAAMAAKLNAASR-- 113

Query: 114 SWRGGPGSMNPVWAGFRCRSLLKRKAWRPLLNTITE 149
             +       PVW GF  R L  ++AWRP L TI E
Sbjct: 114 -LQCESADAAPVWFGFSKRLL--QRAWRPKLGTIHE 146


>AT1G66890.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: 50S ribosomal protein-related
           (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in
           7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:24957614-24958090 FORWARD
           LENGTH=158
          Length = 158

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 3   TLQKFKLFALQCGAV-QSPTRSPMVQLPRPKTTLRALLGLSLT-RPPRRREDVPSAMEKE 60
           +LQKFKL A  C  V +SPTRSP++ L R KT    L   S   R P  + +V  + + +
Sbjct: 2   SLQKFKLLATHCSTVAESPTRSPVIHLRRRKTLRLLLTRSSDRWRLPEIQNNVDESKKTD 61

Query: 61  KDSQRR--QKLKDLFVXXXXXXXXXXXXATPLLGSVAAVGI-------GVGNSSNMGLAR 111
           K  + R  +KL DLFV                 G+   V +       GV N++  G   
Sbjct: 62  KRGKIRSSRKLGDLFVSSPPFEESGGGGGGD-KGTKMEVEMERDVPVNGVSNNAGFGEEI 120

Query: 112 SGSWRGGPGSMNPVWA-GFRCRSLLKRKAWRPLLNTITE 149
           +    G  GS+ P+ +   RCR  L R++WRP+L TI E
Sbjct: 121 TARRVGFNGSVRPMSSVTLRCR--LLRRSWRPVLVTIPE 157