Miyakogusa Predicted Gene
- Lj5g3v2179870.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2179870.1 tr|Q0WU05|Q0WU05_ARATH Auxin regulated protein
OS=Arabidopsis thaliana GN=At2g33310 PE=2
SV=1,34.81,0.00000000002,seg,NULL; IAA_ARF,Aux/IAA-ARF-dimerisation;
AUX_IAA,AUX/IAA protein,gene.g63165.t1.1
(124 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01200.2 | Symbols: IAA32 | indole-3-acetic acid inducible 32... 94 3e-20
AT1G15050.1 | Symbols: IAA34 | indole-3-acetic acid inducible 34... 83 4e-17
AT2G01200.1 | Symbols: IAA32, MEE10 | indole-3-acetic acid induc... 64 2e-11
AT2G33310.2 | Symbols: IAA13 | auxin-induced protein 13 | chr2:1... 59 1e-09
AT2G33310.3 | Symbols: IAA13 | auxin-induced protein 13 | chr2:1... 59 1e-09
AT2G33310.1 | Symbols: IAA13 | auxin-induced protein 13 | chr2:1... 59 1e-09
AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional regu... 55 1e-08
AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 30... 50 3e-07
AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 20... 49 8e-07
>AT2G01200.2 | Symbols: IAA32 | indole-3-acetic acid inducible 32 |
chr2:118385-119219 FORWARD LENGTH=191
Length = 191
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 16 DLMDWPH----SDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVL 71
+L+DW S LK+ T H R +S ++AYVKVN+DG+ +GRK+C++
Sbjct: 58 ELIDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGESRGKYAYVKVNLDGLVVGRKVCLV 117
Query: 72 DHGGYSSLAIQLEDMXXXXXXXXXXXXXXXXXYSLFYKDREDNWRHVGDVPWK 124
D G Y++LA+QL DM +SL Y+DRE WR+VGDVPWK
Sbjct: 118 DQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWK 170
>AT1G15050.1 | Symbols: IAA34 | indole-3-acetic acid inducible 34 |
chr1:5182256-5183243 REVERSE LENGTH=185
Length = 185
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 45/75 (60%)
Query: 49 NERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXXXXXXXXXXXXXYSLFY 108
+W YVKV MDG+ +GRK+CVLDHG YS+LA QLEDM + L Y
Sbjct: 89 RRKWGYVKVTMDGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLVY 148
Query: 109 KDREDNWRHVGDVPW 123
+D E WR+ GDVPW
Sbjct: 149 RDEEGLWRNAGDVPW 163
>AT2G01200.1 | Symbols: IAA32, MEE10 | indole-3-acetic acid
inducible 32 | chr2:118385-119006 FORWARD LENGTH=143
Length = 143
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 16 DLMDWPH----SDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVL 71
+L+DW S LK+ T H R +S ++AYVKVN+DG+ +GRK+C++
Sbjct: 58 ELIDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGESRGKYAYVKVNLDGLVVGRKVCLV 117
Query: 72 DHGGYSSLAIQLEDM 86
D G Y++LA+QL DM
Sbjct: 118 DQGAYATLALQLNDM 132
>AT2G33310.2 | Symbols: IAA13 | auxin-induced protein 13 |
chr2:14114569-14115757 REVERSE LENGTH=247
Length = 247
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 27/135 (20%)
Query: 17 LMDWPHSDLHLKNS--STMHSRSVHDEELEG---------------VQSNERWAYVKVNM 59
++ WP H NS + ++S +EE G V + ++KVNM
Sbjct: 77 VVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNM 136
Query: 60 DGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXXXXXXXXXX----------XXXYSLFYK 109
DGV IGRK+ + H Y +LA LEDM + L Y+
Sbjct: 137 DGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYE 196
Query: 110 DREDNWRHVGDVPWK 124
D+E +W VGDVPW+
Sbjct: 197 DKEGDWMLVGDVPWR 211
>AT2G33310.3 | Symbols: IAA13 | auxin-induced protein 13 |
chr2:14114569-14115757 REVERSE LENGTH=246
Length = 246
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 27/135 (20%)
Query: 17 LMDWPHSDLHLKNS--STMHSRSVHDEELEG---------------VQSNERWAYVKVNM 59
++ WP H NS + ++S +EE G V + ++KVNM
Sbjct: 76 VVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNM 135
Query: 60 DGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXXXXXXXXXX----------XXXYSLFYK 109
DGV IGRK+ + H Y +LA LEDM + L Y+
Sbjct: 136 DGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYE 195
Query: 110 DREDNWRHVGDVPWK 124
D+E +W VGDVPW+
Sbjct: 196 DKEGDWMLVGDVPWR 210
>AT2G33310.1 | Symbols: IAA13 | auxin-induced protein 13 |
chr2:14114569-14115757 REVERSE LENGTH=246
Length = 246
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 27/135 (20%)
Query: 17 LMDWPHSDLHLKNS--STMHSRSVHDEELEG---------------VQSNERWAYVKVNM 59
++ WP H NS + ++S +EE G V + ++KVNM
Sbjct: 76 VVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNM 135
Query: 60 DGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXXXXXXXXXX----------XXXYSLFYK 109
DGV IGRK+ + H Y +LA LEDM + L Y+
Sbjct: 136 DGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYE 195
Query: 110 DREDNWRHVGDVPWK 124
D+E +W VGDVPW+
Sbjct: 196 DKEGDWMLVGDVPWR 210
>AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional
regulator family protein | chr1:1240582-1241810 FORWARD
LENGTH=239
Length = 239
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 17 LMDWPHSDLH----LKNSSTMHS----------RSVHDEELEGVQSN-----ERWAYVKV 57
++ WP LH L N+ M + + V ++EL+ V + +VKV
Sbjct: 70 VVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKV 129
Query: 58 NMDGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXXXXXXXXXX-------XXXYSLFYKD 110
NMDGV IGRK+ + H Y +LA LE+M + L Y+D
Sbjct: 130 NMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYED 189
Query: 111 REDNWRHVGDVPWK 124
+E +W VGDVPW+
Sbjct: 190 KEGDWMLVGDVPWR 203
>AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 30 |
chr3:22995835-22996593 FORWARD LENGTH=172
Length = 172
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 54 YVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXX-XXXXXXXXXXXYSLFYKDRE 112
YVKVNM+GV IGRKI +L GY L L+ M + L Y D+E
Sbjct: 84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKE 143
Query: 113 DNWRHVGDVPWK 124
+W VGDVPW+
Sbjct: 144 GDWMMVGDVPWE 155
>AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 20 |
chr2:19307861-19308869 FORWARD LENGTH=175
Length = 175
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 54 YVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXX-XXXXXXXXXXXYSLFYKDRE 112
YVKVNM+GV IGRKI ++ GY L L+ M + L Y D+E
Sbjct: 86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKE 145
Query: 113 DNWRHVGDVPWK 124
+W VGDVPW+
Sbjct: 146 GDWMMVGDVPWE 157