Miyakogusa Predicted Gene
- Lj5g3v2179600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2179600.1 Non Chatacterized Hit- tr|Q5RFT2|Q5RFT2_PONAB
Putative uncharacterized protein DKFZp469I134
OS=Pongo,51.72,1e-18,ZF_C3H1,Zinc finger, CCCH-type; coiled-coil,NULL;
CCCH zinc finger,NULL; zf-CCCH,Zinc finger, CCCH-t,CUFF.56838.1
(357 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68200.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 237 9e-63
AT1G68200.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 233 1e-61
AT1G66810.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 185 3e-47
AT2G35430.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 54 2e-07
AT3G19360.1 | Symbols: | Zinc finger (CCCH-type) family protein... 49 6e-06
AT1G32360.1 | Symbols: | Zinc finger (CCCH-type) family protein... 49 7e-06
>AT1G68200.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:25562118-25563948 FORWARD LENGTH=308
Length = 308
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/296 (47%), Positives = 179/296 (60%), Gaps = 36/296 (12%)
Query: 62 FIQKQQDMVNRHNMCLTRLLETSKEVEALQQENGQLRAVNNELQKQLDQIVIQASLENRF 121
+Q++QDMVNR +C TRL E S E EAL+ EN +LR++N L+ +L+ + I++S++NRF
Sbjct: 40 IMQQRQDMVNREALCYTRLHEASLEAEALRLENTELRSMNLRLKNELNSL-IRSSIQNRF 98
Query: 122 XXXXXXXXXXXXQTPPSAAFEHLAHAFRSFQIGDGKENCADWXXXXXXXXXDKEMQEVSD 181
P +L+ IG N AD ++ +
Sbjct: 99 D-----------HRSPLRMLSNLS-------IGG---NDADEVENQNRTVNRDDVND--- 134
Query: 182 HASPTSVIESNNGNVEVERYSLPKSISVRSKGYWKWPHPVPPAATTNNACRPKNATRPRA 241
SPTSV+E N ++ R SLPKSISVRS GY K + +P+
Sbjct: 135 -KSPTSVME----NEDLNRSSLPKSISVRSNGYSKASQGG--GGAAAQSGKPRGTVTKPG 187
Query: 242 SSTPSDTVQKVYVRGGKKEEEPLEMV---VYNQGMFKTELCNKWQETGACPYGDHCQFAH 298
+ T QKVYVRGG K+E+ E + VYNQGM KTELCNKWQETG CPYGDHCQFAH
Sbjct: 188 TCGQVSTTQKVYVRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYGDHCQFAH 247
Query: 299 GIGELRPVIRHPRYKTEVCRMVLSGVVCPYGHRCHFRHALTEQEKAVSQS-KPRTT 353
GI ELRPVIRHPRYKTEVCRMVL+G CPYGHRCHFRH+L+EQEK V+ KP+++
Sbjct: 248 GIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSS 303
>AT1G68200.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:25562118-25563948 FORWARD LENGTH=307
Length = 307
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/296 (48%), Positives = 181/296 (61%), Gaps = 37/296 (12%)
Query: 62 FIQKQQDMVNRHNMCLTRLLETSKEVEALQQENGQLRAVNNELQKQLDQIVIQASLENRF 121
+Q++QDMVNR +C TRL E S E EAL+ EN +LR++N L+ +L+ + I++S++NRF
Sbjct: 40 IMQQRQDMVNREALCYTRLHEASLEAEALRLENTELRSMNLRLKNELNSL-IRSSIQNRF 98
Query: 122 XXXXXXXXXXXXQTPPSAAFEHLAHAFRSFQIGDGKENCADWXXXXXXXXXDKEMQEVSD 181
P +L+ IG N AD ++ +
Sbjct: 99 D-----------HRSPLRMLSNLS-------IGG---NDADEVENQNRTVNRDDVND--- 134
Query: 182 HASPTSVIESNNGNVEVERYSLPKSISVRSKGYWKWPHPVPPAATTNNACRPKNATRPRA 241
SPTSV+E N ++ R SLPKSISVRS GY K AA + R T+P
Sbjct: 135 -KSPTSVME----NEDLNRSSLPKSISVRSNGYSKASQGGGGAAAQSGKPR-GTVTKPGT 188
Query: 242 SSTPSDTVQKVYVRGGKKEEEPLEMV---VYNQGMFKTELCNKWQETGACPYGDHCQFAH 298
S T KVYVRGG K+E+ E + VYNQGM KTELCNKWQETG CPYGDHCQFAH
Sbjct: 189 CGQVSTT--KVYVRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYGDHCQFAH 246
Query: 299 GIGELRPVIRHPRYKTEVCRMVLSGVVCPYGHRCHFRHALTEQEKAVSQS-KPRTT 353
GI ELRPVIRHPRYKTEVCRMVL+G CPYGHRCHFRH+L+EQEK V+ KP+++
Sbjct: 247 GIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSS 302
>AT1G66810.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:24927613-24928619 REVERSE LENGTH=310
Length = 310
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 106/153 (69%), Gaps = 10/153 (6%)
Query: 199 ERYSLPKSISVRSKGYWKWPHPVPPAATTNNACRPKNATRPRASSTPSDTVQKVYVRGGK 258
ER SLPKSISVRS+GY K H + + + SS + QKV V K
Sbjct: 168 ERNSLPKSISVRSQGYLKINHGFEAS----------DLQTSQLSSNSVSSSQKVCVVQTK 217
Query: 259 KEEEPLEMVVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIGELRPVIRHPRYKTEVCR 318
E E LE+ VY QGM KTELCNKWQETGAC YGD+CQFAHGI ELRPVIRHPRYKTEVCR
Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCR 277
Query: 319 MVLSGVVCPYGHRCHFRHALTEQEKAVSQSKPR 351
M+++G +CPYGHRCHFRH+LT+QE+ + R
Sbjct: 278 MMVTGAMCPYGHRCHFRHSLTDQERMMMMMLTR 310
>AT2G35430.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:14901014-14902257 REVERSE LENGTH=252
Length = 252
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 274 FKTELCNKWQETGACPYGDHCQFAHGIGEL 303
+KT +CNKWQ TG CP+G HC FAHG EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
>AT3G19360.1 | Symbols: | Zinc finger (CCCH-type) family protein |
chr3:6707544-6708864 FORWARD LENGTH=386
Length = 386
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 241 ASSTPSDTVQKVYVRGGKKEEEPLEMVVYNQGM-----FKTELCNKWQETGACPYGDHCQ 295
A+ PSDT + + ++ P+ + N G+ +KT LC K+ TG CP+GD C
Sbjct: 233 AADQPSDTASNL-IEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCH 291
Query: 296 FAHGIGEL 303
FAHG EL
Sbjct: 292 FAHGQAEL 299
>AT1G32360.1 | Symbols: | Zinc finger (CCCH-type) family protein |
chr1:11673325-11675162 FORWARD LENGTH=384
Length = 384
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 274 FKTELCNKWQETGACPYGDHCQFAHGIGEL 303
+KT +CNKW+ TG CP+G C FAHG EL
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAEL 290