Miyakogusa Predicted Gene
- Lj5g3v2167340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2167340.1 tr|F2DRD2|F2DRD2_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,31.68,7e-19,FAMILY NOT
NAMED,NULL,CUFF.56805.1
(162 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 173 4e-44
AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 114 3e-26
AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 113 5e-26
AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma me... 113 6e-26
>AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits
to 169 proteins in 21 species: Archae - 0; Bacteria - 0;
Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other
Eukaryotes - 5 (source: NCBI BLink). |
chr1:26818244-26820852 FORWARD LENGTH=557
Length = 557
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 100/146 (68%)
Query: 12 FIIIGWLLVAATFILSGVFMILDNVISDTCMETGEWAANPHKESTLSCVLPCVDQRTTNK 71
F++ GW+LVA TF+L GVF+IL+N ISDTC+ EW NPH E+ LS +LPCVDQ+TTN+
Sbjct: 287 FVVSGWILVAVTFVLCGVFLILNNAISDTCVAMKEWVDNPHAETALSSILPCVDQQTTNQ 346
Query: 72 TLIQSTQVANYIATIVNRFIYETTNINATRGTLGYYNQSGSLMLPLCIPFDSQYQERPCE 131
TL QS V N I T+VN F+Y N N G YYNQSG M PLCIPFD+ ++R C
Sbjct: 347 TLSQSKVVINSIVTVVNTFVYAVANTNPAPGQDRYYNQSGPPMPPLCIPFDANMEDRQCS 406
Query: 132 DQEISSANASMVWKKSECEVCDSSIC 157
E+S NAS VW+ +CEV S IC
Sbjct: 407 PWELSIENASSVWENYKCEVTPSGIC 432
>AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 175 Blast hits to 171 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2;
Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:30281638-30284258 REVERSE
LENGTH=538
Length = 538
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 2 FLCLIYLFCRF-------IIIGWLLVAATFILSGVFMILDNVISDTCMETGEWAANPHKE 54
FL L++ FC +I+GW+LV AT +LS VF++ NV++DTCM +W +P +
Sbjct: 272 FLGLLFSFCGLRVLVYLLVILGWILVTATILLSAVFLVFHNVVADTCMAMDQWVHDPAAD 331
Query: 55 STLSCVLPCVDQRTTNKTLIQSTQVANYIATIVNRFIYETTNINATRGTLGYY-NQSGSL 113
S LS +LPC+D +T +TL + + + N + +N + +Y NQSG L
Sbjct: 332 SALSQLLPCLDPKTIGETLDITKTMTATAVDMTNAYTVNVSNHDQFPPNAPFYHNQSGPL 391
Query: 114 MLPLCIPFDSQYQERPCEDQEISSANASMVWKKSECEVCDSSIC 157
+ LC P D ++ RPC E+ ANAS V+K C+V IC
Sbjct: 392 VPLLCNPLDQNHKPRPCAPDEVLLANASQVYKGYICQVNAEGIC 435
>AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G25270.1);
Has 177 Blast hits to 172 proteins in 23 species: Archae
- 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
| chr2:5005144-5008140 REVERSE LENGTH=541
Length = 541
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 4 CLIYLFCRFIIIGWLLVAATFILSGVFMILDNVISDTCMETGEWAANPHKESTLSCVLPC 63
CL+Y +I+GW+LV TF+L G F++L NV+ DTC+ +W NP + L +LPC
Sbjct: 281 CLVY---TLVILGWILVTVTFVLCGGFLLLHNVVGDTCVAMDQWVQNPTAHTALDDILPC 337
Query: 64 VDQRTTNKTLIQSTQVANYIATIVNRFIYETTNIN-ATRGTLGYYNQSGSLMLPLCIPFD 122
VD T +TL ++ V + +++ I TN N + YYNQSG LM LC PF+
Sbjct: 338 VDNATARETLTRTKLVTYQLVNLLDNAISNMTNRNFPPQFRPLYYNQSGPLMPLLCNPFN 397
Query: 123 SQYQERPCEDQEISSANASMVWKKSECEVCDSSIC 157
+ +R C+ ++ NA+ VWK C++ C
Sbjct: 398 ADLSDRQCQPGQVHLNNATEVWKNFTCQIVTPGTC 432
>AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:10759779-10762358 FORWARD
LENGTH=545
Length = 545
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 12 FIIIGWLLVAATFILSGVFMILDNVISDTCMETGEWAANPHKESTLSCVLPCVDQRTTNK 71
+I+GW+LV TFILSG F++L N +DTC+ EW P + L +LPC D T +
Sbjct: 291 LVILGWILVTGTFILSGTFLVLHNATADTCVAMSEWVERPSSNTALDEILPCTDNATAQE 350
Query: 72 TLIQSTQVANYIATIVNRFIYETTNINATRGTLG-YYNQSGSLMLPLCIPFDSQYQERPC 130
TL++S +V + ++N I +NIN + + YYNQSG L+ LC PF+ +R C
Sbjct: 351 TLMRSREVTGQLVELINTVITNVSNINFSPVFVPMYYNQSGPLLPLLCNPFNHDLTDRSC 410
Query: 131 EDQEISSANASMVWKKSECEVCDSSIC 157
++ NA+ W C+V + C
Sbjct: 411 SPGDLDLNNATEAWTSFVCQVSQNGTC 437