Miyakogusa Predicted Gene

Lj5g3v2152700.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2152700.3 Non Chatacterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,42.2,5e-17,no
description,Nucleic acid-binding, OB-fold; DUF223,Domain of unknown
function DUF223; Nucleic acid,CUFF.57178.3
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    70   2e-12
AT1G36510.1 | Symbols:  | Nucleic acid-binding proteins superfam...    49   5e-06
AT3G32260.1 | Symbols:  | Nucleic acid-binding proteins superfam...    48   8e-06
AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    48   9e-06

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%)

Query: 30  TWRVKVRVLRVWDMFPVGEPSKPYAIHVVLIDVEGVKIEGIIKKGMLKKFRGELVEGSVY 89
           T +VKVR+ R+W       P     I ++L+D +G +I+  I+  +L KF+ +L EG  Y
Sbjct: 17  TCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCY 76

Query: 90  RITYFNVISNSGAFRATEHGFKIVFNSQTKV 120
            I  F +  N G++RA+ H +KI F S T +
Sbjct: 77  MIMNFEISDNGGSYRASSHPYKINFMSMTHI 107


>AT1G36510.1 | Symbols:  | Nucleic acid-binding proteins
          superfamily | chr1:13761926-13764265 FORWARD LENGTH=351
          Length = 351

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 8/74 (10%)

Query: 24 IDPKKDTWRVKVRVLRVWDMFPVGEPSKPYAIHVVLIDVEGVKIEGIIKKGMLKKFRGEL 83
          I+P  D +++KVRV+R+W +F         +I +VL+D EG ++   I++G+ K+F+ + 
Sbjct: 15 INPALDQYKIKVRVVRLWRLFK--------SIEMVLVDGEGTRVHASIEEGLGKRFQHQF 66

Query: 84 VEGSVYRITYFNVI 97
          V G    I  F+ +
Sbjct: 67 VSGESRIIDTFSFV 80


>AT3G32260.1 | Symbols:  | Nucleic acid-binding proteins
          superfamily | chr3:13219168-13221456 FORWARD LENGTH=309
          Length = 309

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 8/75 (10%)

Query: 24 IDPKKDTWRVKVRVLRVWDMFPVGEPSKPYAIHVVLIDVEGVKIEGIIKKGMLKKFRGEL 83
          I+P  + +++K RV+R+W +F         +I +VL+D EG +I   I++G++K+F+ +L
Sbjct: 15 INPALEQYKIKKRVVRLWRLFK--------SIEMVLVDGEGTRIHASIEEGLVKRFQHQL 66

Query: 84 VEGSVYRITYFNVIS 98
          V G    I  F+ + 
Sbjct: 67 VNGESRIIDTFSFVD 81


>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 14  LNPLRSICIGIDPKKDTWRVKVRVLRVWDMFPVGEPSKPYAIHVVLIDVEGVKIEGIIKK 73
           +NP  +I   + P K +W ++V++L  W+ +  G      +  ++L D +G KI+  IKK
Sbjct: 4   VNPYTAI-KNLKPFKTSWCIQVKILHAWNHYTKG---SGMSYEMMLADEDGNKIQAGIKK 59

Query: 74  GMLKKFRGELVEGSVYRITYFNVISNSGAFRATEHGFKIVFNSQTK 119
             L K +  +  G    I  F+V   SG +R+T H ++I   S T+
Sbjct: 60  EHLLKLQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTR 105