Miyakogusa Predicted Gene

Lj5g3v2152700.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2152700.2 tr|G7K1P7|G7K1P7_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_5g078250 PE=4
SV=1,30.72,0.000000000000003,no description,Nucleic acid-binding,
OB-fold; DUF223,Domain of unknown function DUF223; seg,NULL;
Nu,CUFF.57178.2
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    55   3e-08

>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 18/162 (11%)

Query: 29  KTSWNLKVRIISMWNTRARYLPTVQSCTEVILLDKEGSKIQASVCKDH--RLRGEIFTGF 86
           KTSW ++V+I+  WN    Y        E++L D++G+KIQA + K+H  +L+  +  G 
Sbjct: 17  KTSWCIQVKILHAWN---HYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQRYVKIGH 73

Query: 87  VYKISKFKVIPNTRELRCTSHGYRLVFNTHTILTLSGDTSIPREGW----SFYD--TGYI 140
              I +F V   +   R T+H YR+  N  +    S   +I  E W    +F D  +G +
Sbjct: 74  WTIIEEFSVTKASGLYRSTTHPYRI--NIQSSTRFSNSPTISDEIWLDLVNFNDVLSGTL 131

Query: 141 ERCRGIFSHLSDFIGVVSSVSAVWRFVTEGKTTKMMIVELGD 182
           ++ +     L + IG + +V  +     +GK TK +  +L D
Sbjct: 132 DQNK-----LVNVIGQLVNVGEIQLLDVQGKPTKKIDFQLRD 168