Miyakogusa Predicted Gene

Lj5g3v2146940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2146940.1 Non Chatacterized Hit- tr|D8UHH7|D8UHH7_VOLCA
Putative uncharacterized protein OS=Volvox carteri GN=,40.87,3e-18,
,CUFF.56829.1
         (146 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01720.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   227   2e-60

>AT3G01720.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G25265.1);
           Has 374 Blast hits to 211 proteins in 23 species: Archae
           - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316;
           Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
           | chr3:262412-265608 REVERSE LENGTH=802
          Length = 802

 Score =  227 bits (579), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 124/142 (87%)

Query: 5   LILWSVVMVVGVAICTVSAKKAPWKMHTLFSVECQNYFDWQTVGLMHSYRKAKQPGPITR 64
           LI   V  +V   +   S + AP+++HTLFSVECQNYFDWQTVGLMHS+ K+ QPGPITR
Sbjct: 5   LITAIVAALVVSVLADESGQMAPYRIHTLFSVECQNYFDWQTVGLMHSFLKSGQPGPITR 64

Query: 65  LLSCTDEQKKSYRGMHLAPTFEVPSMSKHPTTGDWYPAINKPAGVLYWLKHSKDAENVDF 124
           LLSCTD+QKK+YRGM+LAPTFEVPS S+HP TGDWYPAINKP GVLYWL+HS++A++VD+
Sbjct: 65  LLSCTDDQKKTYRGMNLAPTFEVPSWSRHPKTGDWYPAINKPVGVLYWLQHSEEAKHVDW 124

Query: 125 VVILDADMIIRGPIIPWELGAE 146
           VVILDADMIIRGPIIPWELGAE
Sbjct: 125 VVILDADMIIRGPIIPWELGAE 146



 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 95/118 (80%), Gaps = 4/118 (3%)

Query: 29  KMHTLFSVECQNYFDWQTVGLMHSYRKAKQPGPITRLLSCTDEQKKSYRGMHLAPTFEVP 88
           K+HTLFS EC  YFDWQTVG MHS+R++ QPG ITRLLSCTDE  K+Y+G  LAPT  VP
Sbjct: 393 KIHTLFSTECTTYFDWQTVGFMHSFRQSGQPGNITRLLSCTDEALKNYKGHDLAPTHYVP 452

Query: 89  SMSKHPTTGDWYPAINKPAGVLYWLKHSK-DAENVDFVVILDADMIIRGPIIPWELGA 145
           SMS+HP TGDWYPAINKPA V++WL H+  DAE   +VVILDADMI+RGPI PWE  A
Sbjct: 453 SMSRHPLTGDWYPAINKPAAVVHWLHHTNIDAE---YVVILDADMILRGPITPWEFKA 507