Miyakogusa Predicted Gene

Lj5g3v2123620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2123620.1 Non Chatacterized Hit- tr|B9S6V9|B9S6V9_RICCO
Amino acid transporter, putative OS=Ricinus communis G,59.21,1e-18,
,CUFF.56736.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65990.1 | Symbols:  | Transmembrane amino acid transporter f...    90   4e-19
AT4G38250.1 | Symbols:  | Transmembrane amino acid transporter f...    89   8e-19
AT2G42005.1 | Symbols:  | Transmembrane amino acid transporter f...    87   3e-18

>AT5G65990.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr5:26394955-26396321 FORWARD
           LENGTH=427
          Length = 427

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 4/76 (5%)

Query: 1   MIVLSQAGFCVNFLIFLATSLGFLTNNAAGDTVPVFLGLTLKVLFLWGCLPFQLGLNSMP 60
           M+VLSQ+GFCV++LIF+AT++  L +          LGL    ++LWGC PFQLGLNS+P
Sbjct: 127 MLVLSQSGFCVSYLIFVATTMANLLSRGTEH----ILGLDAASIYLWGCFPFQLGLNSIP 182

Query: 61  TLTHLVPLSMFADVVD 76
           +LTHL PLS+FAD+VD
Sbjct: 183 SLTHLAPLSIFADIVD 198


>AT4G38250.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr4:17935533-17936843 FORWARD
           LENGTH=436
          Length = 436

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 8/83 (9%)

Query: 2   IVLSQAGFCVNFLIFLATSLGFLTNNAAGDTV--------PVFLGLTLKVLFLWGCLPFQ 53
           I+LSQAGFCV +LIF+ T+L  L++  +  ++          FLG++ K L++WGC PFQ
Sbjct: 125 IILSQAGFCVGYLIFIGTTLANLSDPESPTSLRHQFTRLGSEFLGVSSKSLYIWGCFPFQ 184

Query: 54  LGLNSMPTLTHLVPLSMFADVVD 76
           LGLNS+ TLTHL PLS+FAD+VD
Sbjct: 185 LGLNSIKTLTHLAPLSIFADIVD 207


>AT2G42005.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr2:17531323-17532564 REVERSE
           LENGTH=413
          Length = 413

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 3/79 (3%)

Query: 1   MIVLSQAGFCVNFLIFLATSLGFLTNNAAGDTV---PVFLGLTLKVLFLWGCLPFQLGLN 57
           +I+LSQAGFCV +LIF+  +L  L+      T+      +G++ K L++WGC PFQLGLN
Sbjct: 108 LIILSQAGFCVGYLIFIGNTLANLSKPTKSTTLMSLRHLMGVSPKSLYIWGCFPFQLGLN 167

Query: 58  SMPTLTHLVPLSMFADVVD 76
           S+ TLTHL PLS+FADVVD
Sbjct: 168 SIKTLTHLAPLSIFADVVD 186