Miyakogusa Predicted Gene

Lj5g3v2113500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2113500.1 Non Chatacterized Hit- tr|A2ZJE6|A2ZJE6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,44.06,2e-19,seg,NULL,CUFF.56726.1
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01640.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    97   4e-21
AT2G01640.1 | Symbols:  | unknown protein; Has 51 Blast hits to ...    97   4e-21

>AT2G01640.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages. |
           chr2:283085-284034 FORWARD LENGTH=156
          Length = 156

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 5/131 (3%)

Query: 1   MGKTSTRSD--SKSDRKLEKKLEFYSKVKDTVASLGAXXXXXXXXXXXXXXXXXXXAYNL 58
           MGK S  S+  +KSD+K EKKL+FY+KVKDTV SL                     AY+L
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLK-AYDL 59

Query: 59  SSILESLPELKASQKSD-REDDFKLNCKSRKKLLLKEGQRLSAVLKDNLFQADPLAILHQ 117
           +++ E LPE  A QKS     + K+NCK R+KL+L EG+RL+ VL    FQADP+  + Q
Sbjct: 60  TNLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQ 119

Query: 118 HLQNTQ-PIEE 127
           HL + Q P+EE
Sbjct: 120 HLLSQQPPVEE 130


>AT2G01640.1 | Symbols:  | unknown protein; Has 51 Blast hits to 51
           proteins in 21 species: Archae - 0; Bacteria - 0;
           Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other
           Eukaryotes - 7 (source: NCBI BLink). |
           chr2:283085-284034 FORWARD LENGTH=156
          Length = 156

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 5/131 (3%)

Query: 1   MGKTSTRSD--SKSDRKLEKKLEFYSKVKDTVASLGAXXXXXXXXXXXXXXXXXXXAYNL 58
           MGK S  S+  +KSD+K EKKL+FY+KVKDTV SL                     AY+L
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLK-AYDL 59

Query: 59  SSILESLPELKASQKSD-REDDFKLNCKSRKKLLLKEGQRLSAVLKDNLFQADPLAILHQ 117
           +++ E LPE  A QKS     + K+NCK R+KL+L EG+RL+ VL    FQADP+  + Q
Sbjct: 60  TNLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQ 119

Query: 118 HLQNTQ-PIEE 127
           HL + Q P+EE
Sbjct: 120 HLLSQQPPVEE 130