Miyakogusa Predicted Gene
- Lj5g3v2113410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2113410.1 Non Chatacterized Hit- tr|D8U3J1|D8U3J1_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,39.18,6e-18,DUF3611,Protein of unknown function DUF3611;
seg,NULL,CUFF.56722.1
(289 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon a... 328 3e-90
>AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon at
inner membrane of chloroplasts 21 | chr2:6642512-6644011
REVERSE LENGTH=296
Length = 296
Score = 328 bits (840), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/224 (73%), Positives = 192/224 (85%)
Query: 66 RPRNLPFTVTASSQVSPAFTPSNGESEKAKLDQVAKRLEKTARYFKRLGSLGFWGQLVCT 125
+P P TV S SP+ P + E +KAKL QVAKRLEKT+RYFKRLGS+GFWGQLV T
Sbjct: 73 KPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKTSRYFKRLGSIGFWGQLVST 132
Query: 126 VISAVILSFSVVVTGKVTSPATFYATAGGIVAGFISVFWSFGYIRLSEKLRKTANQPTKA 185
V++AVILSFS+VVTGK TSPATFYATA GI A F+SVFWSFGYIRLSE+LR+T+ P KA
Sbjct: 133 VVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSFGYIRLSERLRRTSIDPAKA 192
Query: 186 PPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAKALTSAANPYYQGIAPGSSPVLA 245
PPRADVVK L++GI+VN+LGMG+A+LGMQATVG LVAKALT++ANP+YQG++ G SPVLA
Sbjct: 193 PPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALTTSANPFYQGVSQGYSPVLA 252
Query: 246 LDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSEALPFPKFA 289
LDVFLVQASANT+LSHFLGLV SLELLRSVT+P SE++ PK A
Sbjct: 253 LDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVPKVA 296