Miyakogusa Predicted Gene

Lj5g3v2113410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2113410.1 Non Chatacterized Hit- tr|D8U3J1|D8U3J1_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,39.18,6e-18,DUF3611,Protein of unknown function DUF3611;
seg,NULL,CUFF.56722.1
         (289 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon a...   328   3e-90

>AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon at
           inner membrane of chloroplasts 21 | chr2:6642512-6644011
           REVERSE LENGTH=296
          Length = 296

 Score =  328 bits (840), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 164/224 (73%), Positives = 192/224 (85%)

Query: 66  RPRNLPFTVTASSQVSPAFTPSNGESEKAKLDQVAKRLEKTARYFKRLGSLGFWGQLVCT 125
           +P   P TV  S   SP+  P + E +KAKL QVAKRLEKT+RYFKRLGS+GFWGQLV T
Sbjct: 73  KPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKTSRYFKRLGSIGFWGQLVST 132

Query: 126 VISAVILSFSVVVTGKVTSPATFYATAGGIVAGFISVFWSFGYIRLSEKLRKTANQPTKA 185
           V++AVILSFS+VVTGK TSPATFYATA GI A F+SVFWSFGYIRLSE+LR+T+  P KA
Sbjct: 133 VVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSFGYIRLSERLRRTSIDPAKA 192

Query: 186 PPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAKALTSAANPYYQGIAPGSSPVLA 245
           PPRADVVK L++GI+VN+LGMG+A+LGMQATVG LVAKALT++ANP+YQG++ G SPVLA
Sbjct: 193 PPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALTTSANPFYQGVSQGYSPVLA 252

Query: 246 LDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSEALPFPKFA 289
           LDVFLVQASANT+LSHFLGLV SLELLRSVT+P SE++  PK A
Sbjct: 253 LDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVPKVA 296