Miyakogusa Predicted Gene

Lj5g3v2112080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2112080.1 tr|K1QTB5|K1QTB5_CRAGI TIP41-like protein
OS=Crassostrea gigas PE=4 SV=1,38.14,0.0000000003,TIP41,TIP41-like
protein; PUTATIVE CYTOSKELETAL PROTEIN,NULL; GAF/PUTATIVE CYTOSKELETAL
PROTEIN,NULL,CUFF.56699.1
         (290 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34270.1 | Symbols:  | TIP41-like family protein | chr4:16404...   401   e-112

>AT4G34270.1 | Symbols:  | TIP41-like family protein |
           chr4:16404138-16406153 REVERSE LENGTH=290
          Length = 290

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/291 (67%), Positives = 229/291 (78%), Gaps = 2/291 (0%)

Query: 1   MEFAVDENDLKAAGAELFEDGGRKGVRIHGWLIESRRHSILTSSNVEEWEQKLHTSHLPE 60
           ME  VD++ LK++GAEL  DG R+G+RIH W IE+ R +ILTS  VEEWE+KL TSHLPE
Sbjct: 1   METVVDKDVLKSSGAELLPDG-RRGLRIHDWEIETLRGTILTSLAVEEWEKKLKTSHLPE 59

Query: 61  MVFGENTLILKHLSSGTKIHFNAFDALRGWKQXXXXXXXXXXXXQWKFRCKPSEQVILDY 120
           MVFGEN L+LKHL S TKIHFNAFDAL GWKQ            QWKFR KPS+QVILDY
Sbjct: 60  MVFGENALVLKHLGSNTKIHFNAFDALAGWKQEGLPPVEVPAAAQWKFRSKPSQQVILDY 119

Query: 121 DYTFTTPYCGSGTIEIDKD-LNASEISEETSNLHWEDCKEQIDLVSLASKEPILFYDEVV 179
           DYTFTTPYCGS  +E DK+ + A    +  + L WE+C++QIDL +L+ KEPILFYDEVV
Sbjct: 120 DYTFTTPYCGSEVVEKDKETVEAKANPKGEATLQWENCEDQIDLAALSLKEPILFYDEVV 179

Query: 180 LYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLIRLRDTRMHCVFGGSTNPVIL 239
           LYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVL+RLR+TRMH  FG    P +L
Sbjct: 180 LYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRETRMHYRFGEDEAPTVL 239

Query: 240 RESCWRESTFQALSAKGTPFDPAVYNDPSIISQRLPIVKQMTQNLVISPKL 290
           RE+CWRE+TFQ+LSAKG P D AV++DPS ISQRLP++K  TQ L I  K+
Sbjct: 240 RENCWREATFQSLSAKGYPVDLAVWSDPSSISQRLPVIKHTTQKLKIPSKV 290