Miyakogusa Predicted Gene

Lj5g3v2110900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2110900.2 Non Chatacterized Hit- tr|I1KFM9|I1KFM9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5056 PE=,49.04,1e-16,
,CUFF.56678.2
         (104 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15090.1 | Symbols: FAR1 | FRS (FAR1 Related Sequences) trans...   101   1e-22
AT3G22170.2 | Symbols: FHY3 | far-red elongated hypocotyls 3 | c...    68   2e-12
AT3G22170.1 | Symbols: FHY3 | far-red elongated hypocotyls 3 | c...    68   2e-12

>AT4G15090.1 | Symbols: FAR1 | FRS (FAR1 Related Sequences)
           transcription factor family | chr4:8614806-8617870
           FORWARD LENGTH=827
          Length = 827

 Score =  101 bits (251), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 69/103 (66%), Gaps = 4/103 (3%)

Query: 1   MDNLSSDAMALNGYYGSXXXXXXXXXXXXXMEPPHEGYYVNQQSMQGLGPLSSMAPSHDG 60
           M+ +SS+AM +NGYYG              MEPPHEGYYV+Q+++QGLG L+S+AP+ D 
Sbjct: 726 METISSEAMDMNGYYGPQQNVQGLLNL---MEPPHEGYYVDQRTIQGLGQLNSIAPAQDS 782

Query: 61  FFGTQHSIHGLGGQLEFRPATSFGYSLQDDE-PDPQFHGNSSR 102
           FF  Q ++ G+ GQ++FRP  +F Y+LQ++     Q  G+SSR
Sbjct: 783 FFTNQQAMSGMVGQIDFRPPPNFTYTLQEEHLSSAQLPGSSSR 825


>AT3G22170.2 | Symbols: FHY3 | far-red elongated hypocotyls 3 |
           chr3:7822359-7825414 REVERSE LENGTH=839
          Length = 839

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MDNLSSDAMALNGYYGSXXXXXXXXXXXXXMEPPHEGYYVNQQSMQGLGPLSSMAPSHDG 60
           MD LS   + +  YYG+             M P  + +Y NQQ+MQGL  L+S+APS+D 
Sbjct: 737 MDKLSPRTVGIESYYGTQQSVQGMVQLNL-MGPTRDNFYGNQQTMQGLRQLNSIAPSYDS 795

Query: 61  FFGTQHSIHGLGGQLEFRPATSFGYSLQDD--EPDPQFHGNSSRNT 104
           ++G Q  IHG G    FRPA +F Y ++DD      Q H ++SR++
Sbjct: 796 YYGPQQGIHGQGVDF-FRPA-NFSYDIRDDPNVRTTQLHEDASRHS 839


>AT3G22170.1 | Symbols: FHY3 | far-red elongated hypocotyls 3 |
           chr3:7822359-7825414 REVERSE LENGTH=839
          Length = 839

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MDNLSSDAMALNGYYGSXXXXXXXXXXXXXMEPPHEGYYVNQQSMQGLGPLSSMAPSHDG 60
           MD LS   + +  YYG+             M P  + +Y NQQ+MQGL  L+S+APS+D 
Sbjct: 737 MDKLSPRTVGIESYYGTQQSVQGMVQLNL-MGPTRDNFYGNQQTMQGLRQLNSIAPSYDS 795

Query: 61  FFGTQHSIHGLGGQLEFRPATSFGYSLQDD--EPDPQFHGNSSRNT 104
           ++G Q  IHG G    FRPA +F Y ++DD      Q H ++SR++
Sbjct: 796 YYGPQQGIHGQGVDF-FRPA-NFSYDIRDDPNVRTTQLHEDASRHS 839