Miyakogusa Predicted Gene
- Lj5g3v2110820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2110820.1 CUFF.56671.1
(360 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33890.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 278 3e-75
AT4G33890.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 278 3e-75
AT2G14850.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 257 1e-68
AT2G24530.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 161 6e-40
AT4G31440.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 160 2e-39
AT5G67410.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 151 5e-37
>AT4G33890.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G14850.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr4:16250057-16251085 FORWARD LENGTH=342
Length = 342
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 238/357 (66%), Gaps = 35/357 (9%)
Query: 10 RVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFI 69
R+DTL++KALI R++G QRA YF QLGR + KI+KSEFD++CI+TIGR+NI LHN+ I
Sbjct: 9 RLDTLEIKALIYREIGNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNRLI 68
Query: 70 KAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLRKDGSVAPRE 129
++I+KNAC +K PP + GS + + + + S +Q +GD+ S + R
Sbjct: 69 RSIIKNACIAKSPP--FIKKGGSFVRFGNGDSKKNSQIQPLHGDSAFS----PSTRKCRS 122
Query: 130 QKFKGRRNGFGRLGKPQSLTP--EKLIHKAQQQQSATELNSLGSRPPISVEEGEEVEQMA 187
+K + R + G LGKP SLT E+ + KA QSATEL SLGSRPP+ V EE E++
Sbjct: 123 RKLRDRPSPLGPLGKPHSLTTTNEESMSKA---QSATELLSLGSRPPVEVVSVEEGEEVE 179
Query: 188 R----SPSIQSRSPVTAPLGISMNFGHG--RKLLSNVLGSKC----HPDTCQSSGDLPDT 237
+ SPS+QSR P+TAPLG+SM+ +G RK +SNV S C + +TCQ++G+LPDT
Sbjct: 180 QIAGGSPSVQSRCPLTAPLGVSMSLRNGATRKSVSNV--SMCSRSFNRETCQNNGELPDT 237
Query: 238 RSLRSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMRNRQ 297
R+LRSRLE++LE EGL +T+D V+LLN+ LD +++RLIE + LA +R G++ +R N Q
Sbjct: 238 RTLRSRLERRLEMEGLKITMDSVSLLNSGLDVFMRRLIEPCLSLANTRCGTDRVREMNYQ 297
Query: 298 SVTGSNVLLPARYMQTATQSAGVSVSDFRVAMELNPQVLGPDWPIQLEKICICASEE 354
Y Q + + + VS+SDFR MELN ++LG DWP+ +EKIC AS++
Sbjct: 298 ------------YTQQSRRLSYVSMSDFRAGMELNTEILGEDWPMHMEKICSRASDK 342
>AT4G33890.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G14850.1); Has 133 Blast hits to 131 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 2; Plants - 129; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD
LENGTH=342
Length = 342
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 238/357 (66%), Gaps = 35/357 (9%)
Query: 10 RVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFI 69
R+DTL++KALI R++G QRA YF QLGR + KI+KSEFD++CI+TIGR+NI LHN+ I
Sbjct: 9 RLDTLEIKALIYREIGNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNRLI 68
Query: 70 KAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLRKDGSVAPRE 129
++I+KNAC +K PP + GS + + + + S +Q +GD+ S + R
Sbjct: 69 RSIIKNACIAKSPP--FIKKGGSFVRFGNGDSKKNSQIQPLHGDSAFS----PSTRKCRS 122
Query: 130 QKFKGRRNGFGRLGKPQSLTP--EKLIHKAQQQQSATELNSLGSRPPISVEEGEEVEQMA 187
+K + R + G LGKP SLT E+ + KA QSATEL SLGSRPP+ V EE E++
Sbjct: 123 RKLRDRPSPLGPLGKPHSLTTTNEESMSKA---QSATELLSLGSRPPVEVVSVEEGEEVE 179
Query: 188 R----SPSIQSRSPVTAPLGISMNFGHG--RKLLSNVLGSKC----HPDTCQSSGDLPDT 237
+ SPS+QSR P+TAPLG+SM+ +G RK +SNV S C + +TCQ++G+LPDT
Sbjct: 180 QIAGGSPSVQSRCPLTAPLGVSMSLRNGATRKSVSNV--SMCSRSFNRETCQNNGELPDT 237
Query: 238 RSLRSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMRNRQ 297
R+LRSRLE++LE EGL +T+D V+LLN+ LD +++RLIE + LA +R G++ +R N Q
Sbjct: 238 RTLRSRLERRLEMEGLKITMDSVSLLNSGLDVFMRRLIEPCLSLANTRCGTDRVREMNYQ 297
Query: 298 SVTGSNVLLPARYMQTATQSAGVSVSDFRVAMELNPQVLGPDWPIQLEKICICASEE 354
Y Q + + + VS+SDFR MELN ++LG DWP+ +EKIC AS++
Sbjct: 298 ------------YTQQSRRLSYVSMSDFRAGMELNTEILGEDWPMHMEKICSRASDK 342
>AT2G14850.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G33890.2); Has 140 Blast hits to 132 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 2; Plants - 133; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr2:6386400-6387275 FORWARD
LENGTH=291
Length = 291
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/348 (43%), Positives = 207/348 (59%), Gaps = 64/348 (18%)
Query: 8 YIRVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQ 67
+ R+++L++KALI +K+G QRA YF QLG+ L+S+ISKSEFD++C +T+GRENI LHN+
Sbjct: 7 FSRLNSLEIKALIYQKIGHQRADTYFDQLGKFLTSRISKSEFDKLCSKTVGRENISLHNR 66
Query: 68 FIKAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAV-PSLLRKDGSVA 126
+++ILKNA +K PPPR P + YGD V P RK
Sbjct: 67 LVRSILKNASVAKSPPPRYPKKSL-------------------YGDPVFPPSPRKC---- 103
Query: 127 PREQKFKGRRNGFGRLGKPQSLTPEKLIHKAQQQQSATELNSLGSRPPISVEEGEEVEQM 186
R +KF+ R + G LGKPQSLT ++ Q+ E+ +SVE+GEEVEQM
Sbjct: 104 -RSRKFRDRPSPLGPLGKPQSLTTTNDESMSKAQRLPMEV--------VSVEDGEEVEQM 154
Query: 187 ARSPSIQSRSPVTAPLGISMNFGHGRKLLSNVLGSKCHPDTCQSSGDLPDTRSLRSRLEQ 246
SPS+QSRSP+TAPLG+S + + S G + +TCQSSG+LPD +LR+RLE+
Sbjct: 155 TGSPSVQSRSPLTAPLGVSFHL-KSKARFSTYNG--INRETCQSSGELPDMITLRARLEK 211
Query: 247 KLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMRNRQSVTGSNVLL 306
KLE EG+ +++D NLLN L++Y++RLIE + LA
Sbjct: 212 KLEMEGIKLSMDSANLLNRGLNAYMRRLIEPCLSLAS----------------------- 248
Query: 307 PARYMQTATQSAGVSVSDFRVAMELNPQVLGPDWPIQLEKICICASEE 354
Q + VS+ DF AME+NP+VLG +WPIQLEKIC ASEE
Sbjct: 249 -----QQKRAVSNVSMLDFHAAMEVNPRVLGEEWPIQLEKICCRASEE 291
>AT2G24530.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G31440.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr2:10422597-10423820 FORWARD LENGTH=407
Length = 407
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 198/402 (49%), Gaps = 62/402 (15%)
Query: 10 RVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFI 69
R+ +LK IV+K G +R+ +YF LGR LS K++KSEFD+ C+R +GREN+ LHNQ I
Sbjct: 8 RISLCELKEHIVKKTGVERSRRYFYYLGRFLSQKLTKSEFDKTCLRLLGRENLSLHNQLI 67
Query: 70 KAILKNACSSKVPPPR---GPARIGSALSGRDSNGLQQSSVQIP-YGDAVPSLLRKDGSV 125
++IL+NA +K PPP G + +A R +GL+QS IP + P +
Sbjct: 68 RSILRNATVAKSPPPDHEAGHSTKANAFQSR-GDGLEQSGTLIPNHSQHEPVWSNGVLPI 126
Query: 126 APRE-------QKFKGRRNGFGRLGKPQSLTPEKL----------IHKAQQQQS----AT 164
+PR+ +K + R + G GK + + + + + Q+S A
Sbjct: 127 SPRKVRSGMQNRKSRDRPSPLGSNGKVEHMLHQPVCREDNRGSVGMENGDYQRSGRYVAD 186
Query: 165 ELNSLGSRP-------------PISVEEGEEVEQMARSPSIQSRSPVTAPLGI---SMNF 208
E + RP +S+ + + E+ AR S SP+ APLGI S +
Sbjct: 187 EKDGEFLRPVEKPRIPNKEKIAAVSMRDDQNQEEQARVN--LSMSPLIAPLGIPFCSASV 244
Query: 209 GHGRKLLSNVLGSKCHPDTCQSSGDLPDTRSLRSRLEQKLEKEGLT-VTVDCVNLLNNAL 267
G + + + + +C SG LPD LR R+E +GL V+++C LNN L
Sbjct: 245 GGSPRTIP--VSTNAELISCYDSGGLPDIEMLRKRMENIAVAQGLEGVSMECAKTLNNML 302
Query: 268 DSYLKRLIESSIGLAGSRS-----GSEYLRMRNRQSVTGSNVLLPARYMQTATQSA---- 318
D YLK+LI S L G+RS G + + + Q+ N + P ++ T +
Sbjct: 303 DVYLKKLINSCFDLVGARSTNGDPGKQRIGKQQSQNKI-VNGVWPTNSLKIQTPNGSSDI 361
Query: 319 -----GVSVSDFRVAMELNPQVLGPDWPIQLEKICICASEER 355
VS+ DFR AMELNP+ LG DWP E+I + + EE+
Sbjct: 362 RQDHHSVSMLDFRTAMELNPRQLGEDWPTLRERISLRSFEEQ 403
>AT4G31440.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G24530.1); Has 210 Blast hits to 209 proteins
in 55 species: Archae - 0; Bacteria - 72; Metazoa - 2;
Fungi - 6; Plants - 128; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr4:15253731-15254870 FORWARD
LENGTH=379
Length = 379
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 194/382 (50%), Gaps = 49/382 (12%)
Query: 10 RVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFI 69
R+D +LK IV+KVG +R+ +YF LGR LS K++KSEFD+ C R +GREN+ LHN+ I
Sbjct: 8 RIDLAELKVHIVKKVGVERSTRYFYYLGRFLSQKLTKSEFDKSCFRLLGRENLSLHNKLI 67
Query: 70 KAILKNACSSKVPP-------PRGPARIGSALSGRDSNGLQQSSVQ--IPYGDAVPSLLR 120
++IL+NA +K PP P +G +S L ++ + + V + +R
Sbjct: 68 RSILRNASLAKSPPSVHQSGHPGKSLVLGKEDGPEESRSLNPDHIRNDLALSNGVLAKVR 127
Query: 121 KDGSVAPREQKFK-------GRRNG---FGRLGKPQSLTPEKLIHKAQQQQSATELNSLG 170
G+ R + K G+ G + R G+ + A+Q+ + +
Sbjct: 128 P-GTCDDRTIRDKPCPLGSNGKVLGPFAYSRPGRYPDERDSAFLCPAEQKAVSGKDQVAA 186
Query: 171 SRPPISVEEGEEVEQMARSPSIQSRSPVTAPLGI---SMNFGHGRKLLSNVLGSKCHPDT 227
PIS ++ +V I S PV APLGI S + G R+ + + + +
Sbjct: 187 ---PISRDDEAQVR-------ILSTPPVMAPLGIPFCSASVGGDRRTVP--VSTSAAAIS 234
Query: 228 CQSSGDLPDTRSLRSRLEQKLEKEGLT-VTVDCVNLLNNALDSYLKRLIESSIGLAGSRS 286
C SG L DT LR R+E +GL V+ +C +LNN LD YLK+L++S + LAG+RS
Sbjct: 235 CYDSGGLSDTEMLRKRMENIAVTQGLGGVSAECSIVLNNMLDLYLKKLMKSCVDLAGARS 294
Query: 287 -----GSEYL-RMRNRQSVTGSNVLLPARYMQTATQSA-------GVSVSDFRVAMELNP 333
G L + ++R + + ++QT+ Q + VS+ DFRVAMELNP
Sbjct: 295 MNGTPGKHSLEKQQSRDELVNGVRTNNSFHIQTSNQPSDITREQHSVSLLDFRVAMELNP 354
Query: 334 QVLGPDWPIQLEKICICASEER 355
LG DWP+ E+I I EER
Sbjct: 355 HQLGEDWPLLRERISISLFEER 376
>AT5G67410.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G14850.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:26896600-26897463
REVERSE LENGTH=287
Length = 287
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 175/348 (50%), Gaps = 67/348 (19%)
Query: 1 MTVPKRSYIRVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRE 60
M + +R D +LK+ I +++G+ + Y L + LS KISKS+FD++ I T+ RE
Sbjct: 1 MPTSQHHVVRTDISELKSQIEKRIGRAKTESYLNLLSKFLSLKISKSDFDKLIIVTVKRE 60
Query: 61 NIPLHNQFIKAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLR 120
NI LHN ++ ILKN C SK PP +G +S+ ++ + + L R
Sbjct: 61 NISLHNALLRGILKNICLSKTLPP-------FVKNGVESDNKKKKQLNGAFQSLCKELPR 113
Query: 121 KDGSVAPREQKFKGRRNGFGRLGKPQSLTPEKLIHKAQQQQSATELNSLGSRPPISVEEG 180
+PR+ + + R N G + K +SL TE+ S R S+E
Sbjct: 114 -----SPRKGRTQRRLNKDGNISKGKSL--------------VTEVVSSSGRQQWSMENV 154
Query: 181 EEVEQMARSPSIQSRSPVTAPLGISMNFGHGRKLLSNVLGSKCHPDTC-QSSGDLPDTRS 239
EEV+Q+ P +S+ P+ AP G++ L +V+ + DTC SSG+LPD+ S
Sbjct: 155 EEVDQLI--PCWRSQ-PIEAPFGVN---------LRDVIKKQHRIDTCCYSSGELPDSVS 202
Query: 240 LRSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMRNRQSV 299
L+ +LE LE EGL V+V N LN LD +LKRLI+ + LA S
Sbjct: 203 LKKKLEDDLE-EGLEVSVGFANSLNAGLDVFLKRLIKPCLELAAS--------------- 246
Query: 300 TGSNVLLPARYMQTATQSAGVSVSDFRVAMELNPQVLGPDWPIQLEKI 347
+++ S+ S+ DF+VAM LNP +LG DWP +LEKI
Sbjct: 247 ------------RSSNASSASSLVDFQVAMALNPSILGEDWPTKLEKI 282