Miyakogusa Predicted Gene

Lj5g3v2099590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2099590.1 Non Chatacterized Hit- tr|C3YH24|C3YH24_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,40.52,8e-19,SUBFAMILY NOT NAMED,NULL; ZINC FINGER PROTEIN-LIKE
1,NULL,CUFF.56651.1
         (334 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14835.2 | Symbols:  | RING/U-box superfamily protein | chr2:...   491   e-139
AT2G14835.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   491   e-139

>AT2G14835.2 | Symbols:  | RING/U-box superfamily protein |
           chr2:6367238-6370610 FORWARD LENGTH=343
          Length = 343

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/344 (69%), Positives = 273/344 (79%), Gaps = 13/344 (3%)

Query: 1   MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVIDGEYDWPPKCCQCQAV 60
           MVVCKC+KAT+LYCFVHK PVCGECICFPEHQ CV+RTYSEWVIDGEYD P KCCQCQA 
Sbjct: 1   MVVCKCKKATRLYCFVHKAPVCGECICFPEHQTCVVRTYSEWVIDGEYDQP-KCCQCQAT 59

Query: 61  LEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSVKDSGSR 120
            +EG G Q TRLGCLH IHT+CLVS IKSFPPHTAPAGY CP CST IWPP  VKD+GSR
Sbjct: 60  FDEGAGHQVTRLGCLHAIHTSCLVSLIKSFPPHTAPAGYVCPACSTPIWPPMMVKDAGSR 119

Query: 121 LHSKLKEAIMQTGMEKNIFGNHPVSLSVTESRSPPPAFASEPLIGRENHGNSD------- 173
           LH+ L+E I QTG+EKN+ GNHPVS S TESRSPPPAFAS+ LI   +  ++        
Sbjct: 120 LHALLREVITQTGLEKNLLGNHPVSRS-TESRSPPPAFASDALINISSSSHTQEGNNLPD 178

Query: 174 --SPATGSEPPKLSVTDIVEIEGANSAGNFVKGSSP--VGPATRKGAFNVERQNSEISYY 229
             S A   E  K +V++IVEI+   SAG+++K SSP     A RKG   V+RQNSE  YY
Sbjct: 179 GYSVAGNGEYSKSAVSEIVEIDVPASAGSYMKSSSPGLAAAAARKGVPAVDRQNSETLYY 238

Query: 230 ADDEDGNRKKYTKRGPFYHKFLRALLPFWSSALPTLPVTAPPRKDASNATEGSEGRTRHQ 289
           ADDEDGNRKKY++RGP  HKFLRALLPFWSSALPTLPVTAPPRKDA+ A +GSEGR RHQ
Sbjct: 239 ADDEDGNRKKYSRRGPLRHKFLRALLPFWSSALPTLPVTAPPRKDAAKADDGSEGRVRHQ 298

Query: 290 RSSRMDPRKILLLIAIMACMATMGILYYRLVQRGPGEELPNEEQ 333
           RSS+MD RKIL+ IA++ACMATMGILYYRL  +  G+ELP+EEQ
Sbjct: 299 RSSKMDIRKILIFIALIACMATMGILYYRLALQAIGQELPDEEQ 342


>AT2G14835.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:6367238-6370610 FORWARD LENGTH=343
          Length = 343

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/344 (69%), Positives = 273/344 (79%), Gaps = 13/344 (3%)

Query: 1   MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVIDGEYDWPPKCCQCQAV 60
           MVVCKC+KAT+LYCFVHK PVCGECICFPEHQ CV+RTYSEWVIDGEYD P KCCQCQA 
Sbjct: 1   MVVCKCKKATRLYCFVHKAPVCGECICFPEHQTCVVRTYSEWVIDGEYDQP-KCCQCQAT 59

Query: 61  LEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPTCSTSIWPPKSVKDSGSR 120
            +EG G Q TRLGCLH IHT+CLVS IKSFPPHTAPAGY CP CST IWPP  VKD+GSR
Sbjct: 60  FDEGAGHQVTRLGCLHAIHTSCLVSLIKSFPPHTAPAGYVCPACSTPIWPPMMVKDAGSR 119

Query: 121 LHSKLKEAIMQTGMEKNIFGNHPVSLSVTESRSPPPAFASEPLIGRENHGNSD------- 173
           LH+ L+E I QTG+EKN+ GNHPVS S TESRSPPPAFAS+ LI   +  ++        
Sbjct: 120 LHALLREVITQTGLEKNLLGNHPVSRS-TESRSPPPAFASDALINISSSSHTQEGNNLPD 178

Query: 174 --SPATGSEPPKLSVTDIVEIEGANSAGNFVKGSSP--VGPATRKGAFNVERQNSEISYY 229
             S A   E  K +V++IVEI+   SAG+++K SSP     A RKG   V+RQNSE  YY
Sbjct: 179 GYSVAGNGEYSKSAVSEIVEIDVPASAGSYMKSSSPGLAAAAARKGVPAVDRQNSETLYY 238

Query: 230 ADDEDGNRKKYTKRGPFYHKFLRALLPFWSSALPTLPVTAPPRKDASNATEGSEGRTRHQ 289
           ADDEDGNRKKY++RGP  HKFLRALLPFWSSALPTLPVTAPPRKDA+ A +GSEGR RHQ
Sbjct: 239 ADDEDGNRKKYSRRGPLRHKFLRALLPFWSSALPTLPVTAPPRKDAAKADDGSEGRVRHQ 298

Query: 290 RSSRMDPRKILLLIAIMACMATMGILYYRLVQRGPGEELPNEEQ 333
           RSS+MD RKIL+ IA++ACMATMGILYYRL  +  G+ELP+EEQ
Sbjct: 299 RSSKMDIRKILIFIALIACMATMGILYYRLALQAIGQELPDEEQ 342