Miyakogusa Predicted Gene

Lj5g3v2099560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2099560.1 Non Chatacterized Hit- tr|J3LQU5|J3LQU5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,47.9,7e-19,seg,NULL; FAMILY NOT NAMED,NULL,gene.g62969.t1.1
         (269 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   120   1e-27
AT2G14760.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   115   4e-26
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr...   114   1e-25
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr...   103   1e-22
AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    91   6e-19
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503...    52   3e-07
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953...    52   3e-07
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508...    50   1e-06

>AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=328
          Length = 328

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 78/125 (62%), Gaps = 31/125 (24%)

Query: 161 QSSCFSQVDSNASLELVSGGAT--SSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR--- 215
           Q +C S  +SN       GG T  S    +D +A  L GK+RA+ G ATD QS+YAR   
Sbjct: 204 QKTCCSDDESN-------GGDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARKRR 256

Query: 216 -------------------VDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGMD 256
                              VDISTMLEEAVQYVKFLQLQIK+LSSDD+WMYAPIAYNGMD
Sbjct: 257 ERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMD 316

Query: 257 IGLDL 261
           IGLDL
Sbjct: 317 IGLDL 321


>AT2G14760.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=341
          Length = 341

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 78/138 (56%), Gaps = 44/138 (31%)

Query: 161 QSSCFSQVDSNASLELVSGGAT--SSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR--- 215
           Q +C S  +SN       GG T  S    +D +A  L GK+RA+ G ATD QS+YAR   
Sbjct: 204 QKTCCSDDESN-------GGDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARLKQ 256

Query: 216 --------------------------------VDISTMLEEAVQYVKFLQLQIKVLSSDD 243
                                           VDISTMLEEAVQYVKFLQLQIK+LSSDD
Sbjct: 257 LNKVHCMMVQKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDD 316

Query: 244 MWMYAPIAYNGMDIGLDL 261
           +WMYAPIAYNGMDIGLDL
Sbjct: 317 LWMYAPIAYNGMDIGLDL 334


>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
           chr4:16239566-16241052 REVERSE LENGTH=352
          Length = 352

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 71/110 (64%), Gaps = 26/110 (23%)

Query: 179 GGATSSMTPKDP-EAPKLYGKSRATSGPATDAQSIYAR---------------------- 215
           GG  SS    DP +A  L GK+RA+ G ATD QS+YAR                      
Sbjct: 245 GGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTK 304

Query: 216 VDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGMDIGLDLSSSP 265
           VDISTMLEEAV YVKFLQLQIK+LSSDD+WMYAPIA+NGMDIGL   SSP
Sbjct: 305 VDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAFNGMDIGL---SSP 351


>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
           chr1:9654753-9655806 FORWARD LENGTH=258
          Length = 258

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 58/85 (68%), Gaps = 22/85 (25%)

Query: 197 GKSRATSGPATDAQSIYAR----------------------VDISTMLEEAVQYVKFLQL 234
           GK+RAT G ATD QS+YAR                      VDISTMLEEAV YVKFLQL
Sbjct: 165 GKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQL 224

Query: 235 QIKVLSSDDMWMYAPIAYNGMDIGL 259
           QIK+LSSDD+WMYAP+AYNG+D+G 
Sbjct: 225 QIKLLSSDDLWMYAPLAYNGLDMGF 249


>AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:17334261-17335234 FORWARD
           LENGTH=223
          Length = 223

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 69/119 (57%), Gaps = 33/119 (27%)

Query: 163 SCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR------- 215
           S ++  D   +L LVS  + S           L  K++A  G A+D QS+YAR       
Sbjct: 107 SSYNSSDDEKALGLVSNTSKS-----------LKRKAKANRGIASDPQSLYARKRRERIN 155

Query: 216 ---------------VDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGMDIGL 259
                          VDISTMLE+AV YVKFLQLQIK+LSS+D+WMYAP+A+NG+++GL
Sbjct: 156 DRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGL 214


>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
           chr5:15036197-15037574 FORWARD LENGTH=307
          Length = 307

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 183 SSMTPKDPEAPKLYGKSRATSGPATDAQSIY---ARVDISTMLEEAVQYVKFLQLQIKVL 239
           ++ +PKDP++     +    S      Q +     +VD+ TMLE+A+ YVKFLQ+Q+KVL
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263

Query: 240 SSDDMW 245
           ++D+ W
Sbjct: 264 AADEFW 269


>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
           chr1:24795326-24796598 FORWARD LENGTH=298
          Length = 298

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 184 SMTPKDPEAPKLYGKSRATSGPATDAQSIY---ARVDISTMLEEAVQYVKFLQLQIKVLS 240
           + +PKDP++     +    S      Q +     +VD+ TMLE+A+ YVKFLQ+Q+KVL+
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLA 258

Query: 241 SDDMW 245
           +D+ W
Sbjct: 259 TDEFW 263


>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
           chr4:15079489-15081606 REVERSE LENGTH=310
          Length = 310

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 60/147 (40%), Gaps = 43/147 (29%)

Query: 129 PTKRFRNSIEDFKNMRNAMPISNNEEG----RGACLQSSCF---------SQVDSNASLE 175
           P   F +   D +N    +P+S+N        G    S  F         +Q  S A+  
Sbjct: 55  PVTGFHHHDADSRNQITMIPLSHNHPNDALFNGFSTGSLPFHLPQGSGGQTQTQSQATAS 114

Query: 176 LVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYARV------------------- 216
             +GGAT+         P+   K RA  G ATD  SI  R+                   
Sbjct: 115 ATTGGATAQ--------PQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNG 166

Query: 217 ---DISTMLEEAVQYVKFLQLQIKVLS 240
              D ++ML+E + YVKFLQLQ+KVLS
Sbjct: 167 NKTDKASMLDEIIDYVKFLQLQVKVLS 193