Miyakogusa Predicted Gene

Lj5g3v2065200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2065200.1 Non Chatacterized Hit- tr|E1ZGD0|E1ZGD0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,24.74,5e-18,seg,NULL; F-box domain,F-box domain, cyclin-like;
A Receptor for Ubiquitination Targets,F-box domain,CUFF.56628.1
         (465 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23780.1 | Symbols:  | F-box family protein | chr1:8407053-84...   192   5e-49
AT1G23770.1 | Symbols:  | F-box family protein | chr1:8405214-84...   155   7e-38
AT1G70360.1 | Symbols:  | F-box family protein | chr1:26508778-2...   121   9e-28

>AT1G23780.1 | Symbols:  | F-box family protein |
           chr1:8407053-8408480 REVERSE LENGTH=475
          Length = 475

 Score =  192 bits (487), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 240/495 (48%), Gaps = 51/495 (10%)

Query: 1   MKLRLRSLESKETHKIEVPDPCSLHLLKTIVXXXXXXXXXXXXXXXXNRKDEIHASSPDD 60
           MKLRLR  E++ET K+E+ D  +LH L+  +                NRKDE+   SP+D
Sbjct: 1   MKLRLRHHETRETLKLELADADTLHDLRRRINPTVPSSVHLSL----NRKDELITPSPED 56

Query: 61  SLQSIGIAAGDLVFYTLHP----------------NSLSRETLPHKPTPQPEVSDSPDRP 104
           +L+S+G+ +GDL++++L                   S S +T  H      EV   PD+ 
Sbjct: 57  TLRSLGLISGDLIYFSLEAGESSNWKLRDSETVASQSESNQTSVHDSIGFAEVDVVPDQA 116

Query: 105 MIQSSSEINARDAKSPSLDVTEPETMEIDDGSDEAVVGYGWGNYQPLFVKSVLREAAIGD 164
             +S+   +  D +     +  PE M+++    E          +P F+K++L E +   
Sbjct: 117 --KSNPNTSVEDPEGDISGMEGPEPMDVEQLDMELAAAGSKRLSEPFFLKNILLEKS--G 172

Query: 165 DASDFKLLILAVHAVILESGFIRVDQVSGMAVNCSHLLDDFPSGSSPVKSLRYTLPEILT 224
           D S+   L L+VHAV+LESGF+ ++  S        LL           SLRYTLPE++ 
Sbjct: 173 DTSELTTLALSVHAVMLESGFVLLNHGSDKFNFSKELL---------TVSLRYTLPELIK 223

Query: 225 KGSS---ESVSLKIQTLGHIVNVCGSLSNDNGSRLHMVYLDRNKFAPPLDFLLANSESKV 281
              +   ESVS+K Q LG +V V G++   +G R+HM  LD+ +F P +D ++  S S  
Sbjct: 224 SKDTNTIESVSVKFQNLGPVVVVYGTVGGSSG-RVHM-NLDKRRFVPVIDLVMDTSTSDE 281

Query: 282 GDDESGNREKVFELWKMVKDGLASPLLIDLCEKSGLDLPPCFMRLPTDLKLIIMENLPGV 341
               S  RE VF  W+MVKD L  PLLI +C+K+GL+ PPC MRLPT+LKL I+E LPGV
Sbjct: 282 EGSSSIYRE-VFMFWRMVKDRLVIPLLIGICDKAGLEPPPCLMRLPTELKLKILELLPGV 340

Query: 342 DLAKVACLNSEMRYLASNNELWXXXXXXXXXXXXXXXQ----FFKHLFAQYWTTKKNSEQ 397
            +  +AC+ +EMRYLAS+N+LW                     +K  FA +W  K+ +  
Sbjct: 341 SIGNMACVCTEMRYLASDNDLWKQKCLEEVNNFVVTEAGDSVNWKARFATFWRQKQLAAA 400

Query: 398 PRRRAFQPGTGFFXXXXXXXXXXXXXXFGVPPI-WGGEYDLQPNIG---GQLRANPRRGT 453
                 Q   G                 G PP  W     +  +IG   GQ      R T
Sbjct: 401 SDTFWRQNQLGRRNISTGRSGIRFPRIIGDPPFTWFNGDRMHGSIGIHPGQSARGLGRRT 460

Query: 454 ----FLPPCHLGGFD 464
               F P C+LGG +
Sbjct: 461 WGQLFTPRCNLGGLN 475


>AT1G23770.1 | Symbols:  | F-box family protein |
           chr1:8405214-8406266 REVERSE LENGTH=350
          Length = 350

 Score =  155 bits (391), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 148/259 (57%), Gaps = 20/259 (7%)

Query: 149 QPLFVKSVLREAAIGDDASDFKLLILAVHAVILESGFIRVDQVSGMAVNCSHLLDDFPSG 208
           +P F+K+VL E +   D SD   L L+VHAV+LESGF+ +D  S        LL      
Sbjct: 45  EPFFLKNVLLEKS--GDTSDLTALALSVHAVMLESGFVLLDHGSDKFSFSKKLLS----- 97

Query: 209 SSPVKSLRYTLPEILTKGSS---ESVSLKIQTLGHIVNVCGSLSNDNGSRLHMVYLDRNK 265
                SLRYTLPE++T+  +   ESV+++ Q +G  + V G+L   +  R+HM  LD+++
Sbjct: 98  ----VSLRYTLPELITRKDTNTVESVTVRFQNIGPRLVVYGTLGG-SCKRVHMTSLDKSR 152

Query: 266 FAPPLDFLLANSESKVGDDESGNREKVFELWKMVKDGLASPLLIDLCEKSGLDLPPCFMR 325
           F P +D ++   + +     S  RE VF LW+MVKD L  PLLI LC+K+GL+ PPC M 
Sbjct: 153 FLPVIDLVVDTLKFEKQGSSSYYRE-VFMLWRMVKDELVIPLLIGLCDKAGLESPPCLML 211

Query: 326 LPTDLKLIIMENLPGVDLAKVACLNSEMRYLASNNELWXXXXXXXXXXXXXXXQF----F 381
           LPT+LKL I+E LPGV +  +AC+ +EMRYLAS+N+LW                     +
Sbjct: 212 LPTELKLKILELLPGVSIGYMACVCTEMRYLASDNDLWEHKCLEEGKGCLWKLYTGDVDW 271

Query: 382 KHLFAQYWTTKKNSEQPRR 400
           K  FA +W  K+     RR
Sbjct: 272 KRKFASFWRRKRLDLLARR 290


>AT1G70360.1 | Symbols:  | F-box family protein |
           chr1:26508778-26509325 FORWARD LENGTH=174
          Length = 174

 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 25/194 (12%)

Query: 165 DASDFKLLILAVHAVILESGFIRVDQVSGMAVNCSHLLDDFPSGSSPVKSLRYTLPEILT 224
           D  +  ++I+ VHAV+LESGF+  D  S M          F      + SL YTLP +  
Sbjct: 6   DTCELTIVIMTVHAVMLESGFVLFDPDSSMR---------FSFSKKTLVSLNYTLPSV-- 54

Query: 225 KGSSESVSLKIQTLGHIVNVCGSLSNDNGSRLHMVYLDRNKFAPPLDFLLANSESKVGDD 284
           KG              IV +        GS + +V +D+  +   +D L+   +S   +D
Sbjct: 55  KG--------------IVGLNFEKEAIVGSFVRVVSIDKRSYVHIVDLLMETLKSDEEED 100

Query: 285 ESGNREKVFELWKMVKDGLASPLLIDLCEKSGLDLPPCFMRLPTDLKLIIMENLPGVDLA 344
                 KV   W+M+KDG+ +PLL+DLC K+GL+LPPCF+ LP +LK  I+E+LPGVD+ 
Sbjct: 101 TLSIDCKVLVWWRMIKDGIVTPLLVDLCYKTGLELPPCFISLPRELKHKILESLPGVDIG 160

Query: 345 KVACLNSEMRYLAS 358
            +AC++SE+R +AS
Sbjct: 161 TLACVSSELRDMAS 174