Miyakogusa Predicted Gene

Lj5g3v2063170.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2063170.2 Non Chatacterized Hit- tr|C5Y4A5|C5Y4A5_SORBI
Putative uncharacterized protein Sb05g021410
OS=Sorghu,48.7,9e-18,seg,NULL,CUFF.56637.2
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   112   1e-25

>AT1G50020.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; Has 72
           Blast hits to 72 proteins in 27 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:18520144-18521600 REVERSE LENGTH=209
          Length = 209

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 75/113 (66%), Gaps = 4/113 (3%)

Query: 63  GDEAPESLFMKELKRRGMNPTSLLEDYKQSSNVLDEEVYVNEEDRGSPKRSAVSTNIERG 122
           G+E PESLFMKELKRRGM PTSLL+DY+    V  +E+   +E   S K +A +   ++ 
Sbjct: 61  GEEPPESLFMKELKRRGMTPTSLLQDYE----VDQDEIKTGKETGNSSKTTATTPAFDKS 116

Query: 123 LENQRERSMALNSEGLEGLVPRAKXXXXXXXXXXXAFGPLILVTVALFSALYF 175
           L NQRERS+ALNSEGLEGL+PRA+            F PLI++T+  FSALY 
Sbjct: 117 LLNQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYL 169