Miyakogusa Predicted Gene
- Lj5g3v2063100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2063100.1 Non Chatacterized Hit- tr|K4BCY7|K4BCY7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,45,6e-18,seg,NULL; coiled-coil,NULL,CUFF.57009.1
(567 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33740.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 88 2e-17
AT4G33740.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 88 2e-17
AT4G33740.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 88 2e-17
AT4G37820.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 86 9e-17
AT2G22795.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 80 3e-15
>AT4G33740.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G37820.1);
Has 138092 Blast hits to 73110 proteins in 2951
species: Archae - 732; Bacteria - 17903; Metazoa -
48520; Fungi - 16808; Plants - 7078; Viruses - 1044;
Other Eukaryotes - 46007 (source: NCBI BLink). |
chr4:16187384-16188802 FORWARD LENGTH=472
Length = 472
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 2 IKRFPNRNPR-SKGIKVKHILQIVLLLGICFWLIYQVKHNRGRKKEFDENDAKLS--VRT 58
+K+ R+ R SKGIK KH+LQI +LLG+C WLIYQVK++ +KKEF E D + S + +
Sbjct: 1 MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLS 60
Query: 59 HQTDQIVKLGRKDLHP 74
D +VKLGRKDL P
Sbjct: 61 EVEDGVVKLGRKDLLP 76
>AT4G33740.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37820.1); Has 138092 Blast hits to 73110
proteins in 2951 species: Archae - 732; Bacteria -
17903; Metazoa - 48520; Fungi - 16808; Plants - 7078;
Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI
BLink). | chr4:16187384-16188802 FORWARD LENGTH=472
Length = 472
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 2 IKRFPNRNPR-SKGIKVKHILQIVLLLGICFWLIYQVKHNRGRKKEFDENDAKLS--VRT 58
+K+ R+ R SKGIK KH+LQI +LLG+C WLIYQVK++ +KKEF E D + S + +
Sbjct: 1 MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLS 60
Query: 59 HQTDQIVKLGRKDLHP 74
D +VKLGRKDL P
Sbjct: 61 EVEDGVVKLGRKDLLP 76
>AT4G33740.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37820.1); Has 138210 Blast hits to 73191
proteins in 2959 species: Archae - 732; Bacteria -
18006; Metazoa - 48521; Fungi - 16820; Plants - 7078;
Viruses - 1046; Other Eukaryotes - 46007 (source: NCBI
BLink). | chr4:16187384-16188802 FORWARD LENGTH=472
Length = 472
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 2 IKRFPNRNPR-SKGIKVKHILQIVLLLGICFWLIYQVKHNRGRKKEFDENDAKLS--VRT 58
+K+ R+ R SKGIK KH+LQI +LLG+C WLIYQVK++ +KKEF E D + S + +
Sbjct: 1 MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYEKDVEKSTVLLS 60
Query: 59 HQTDQIVKLGRKDLHP 74
D +VKLGRKDL P
Sbjct: 61 EVEDGVVKLGRKDLLP 76
>AT4G37820.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G22795.1); Has 433572 Blast hits to 177005
proteins in 4263 species: Archae - 2016; Bacteria -
67591; Metazoa - 157995; Fungi - 49745; Plants - 22011;
Viruses - 2192; Other Eukaryotes - 132022 (source: NCBI
BLink). | chr4:17785692-17787290 FORWARD LENGTH=532
Length = 532
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 4 RFPNRNPRSKGIKVKHILQIVLLLGICFWLIYQVKHNRGRKKEFDENDAKLSVRTHQTDQ 63
R P R RSKGIKVKH +Q+ LLLG+ WLIYQ+KH+ +K EF E +K+ V +
Sbjct: 3 RTPRRGQRSKGIKVKHCIQLTLLLGVGIWLIYQMKHSHEKKAEF-EGTSKIVVDDID-NT 60
Query: 64 IVKLGRKDLHP 74
+V LGRKDL P
Sbjct: 61 VVNLGRKDLRP 71
>AT2G22795.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37820.1); Has 799854 Blast hits to 188815
proteins in 4452 species: Archae - 4529; Bacteria -
144236; Metazoa - 287749; Fungi - 87083; Plants -
43826; Viruses - 3662; Other Eukaryotes - 228769
(source: NCBI BLink). | chr2:9697380-9699584 REVERSE
LENGTH=734
Length = 734
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 1 MIKRFPNRNPRSKGIKVKHILQIVLLLGICFWLIYQVKHNRGRKKEFDENDAKLSVRTHQ 60
M + P R RSKG KVKH +Q+ LLL + WL+YQVKH+ +K +F+E+ +
Sbjct: 1 MFRSSPRRGQRSKGFKVKHCIQLTLLLSVGIWLLYQVKHSHEKKAQFEES---AKIVVGG 57
Query: 61 TDQIVKLGRKDLHP 74
D++VKLGRKDL P
Sbjct: 58 VDKVVKLGRKDLIP 71