Miyakogusa Predicted Gene

Lj5g3v2058550.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2058550.1 Non Chatacterized Hit- tr|I1NGB6|I1NGB6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,83.75,0,SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT
REGULATOR OF CHROMATIN SUBFAMILY-RELATED,NULL; HEL,CUFF.56581.1
         (1079 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:...  1486   0.0  
AT5G19310.1 | Symbols:  | Homeotic gene regulator | chr5:6498906...  1372   0.0  
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...   578   e-165
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...   578   e-165
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...   578   e-165
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re...   508   e-143
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re...   508   e-143
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c...   484   e-136
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c...   484   e-136
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |...   483   e-136
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |...   483   e-136
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |...   483   e-136
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544...   426   e-119
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD...   409   e-114
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re...   382   e-105
AT2G44980.1 | Symbols:  | SNF2 domain-containing protein / helic...   359   7e-99
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr...   358   2e-98
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat...   353   3e-97
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat...   353   3e-97
AT2G44980.2 | Symbols:  | SNF2 domain-containing protein / helic...   352   1e-96
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi...   299   7e-81
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ...   276   7e-74
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac...   276   8e-74
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi...   272   8e-73
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129...   258   2e-68
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21...   253   5e-67
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6...   249   7e-66
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ...   248   1e-65
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25...   241   2e-63
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21...   240   4e-63
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW...   145   2e-34
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto...   131   2e-30
AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domai...   115   2e-25
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75...   111   3e-24
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid...   108   1e-23
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph...   108   2e-23
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph...   108   2e-23
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph...   108   2e-23
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91...   105   2e-22
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16...   104   3e-22
AT5G07810.1 | Symbols:  | SNF2 domain-containing protein / helic...   102   1e-21
AT5G05130.1 | Symbols:  | DNA/RNA helicase protein | chr5:151217...    97   8e-20
AT1G02670.1 | Symbols:  | P-loop containing nucleoside triphosph...    93   1e-18
AT3G16600.1 | Symbols:  | SNF2 domain-containing protein / helic...    92   2e-18
AT1G11100.1 | Symbols:  | SNF2 domain-containing protein / helic...    92   3e-18
AT1G05120.1 | Symbols:  | Helicase protein with RING/U-box domai...    90   1e-17
AT1G11100.2 | Symbols:  | SNF2 domain-containing protein / helic...    89   2e-17
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ...    86   2e-16
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ...    86   2e-16
AT1G50410.1 | Symbols:  | SNF2 domain-containing protein / helic...    84   7e-16
AT3G20010.1 | Symbols:  | SNF2 domain-containing protein / helic...    83   1e-15
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88...    81   3e-15
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin...    75   2e-13
AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family...    73   1e-12
AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family...    73   1e-12
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68...    72   3e-12
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ...    70   5e-12
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c...    67   5e-11
AT2G40770.1 | Symbols:  | zinc ion binding;DNA binding;helicases...    64   7e-10
AT3G54460.1 | Symbols:  | SNF2 domain-containing protein / helic...    56   2e-07

>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
            chr3:1802435-1807284 REVERSE LENGTH=1102
          Length = 1102

 Score = 1486 bits (3847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 754/1077 (70%), Positives = 876/1077 (81%), Gaps = 35/1077 (3%)

Query: 8    EEDKKEHAKTLICALNLLSRDLPLPSHLLTSVSSIYH-----------------NNHHDD 50
            +ED  E  K+LICALN +SRDLPLP HL T+VSSIYH                  +   +
Sbjct: 15   QEDPVETTKSLICALNYISRDLPLPPHLFTAVSSIYHGASSSSLSDSDVSPPLPTSPPAN 74

Query: 51   VGDSGEGLIADLEDAVLNQRLSRVSGSKLEEARGNRYQTQIQNRLNQLQELPSSRGDDLQ 110
                G  L+ + EDA+L QR    SGS+L +   NR ++ IQ RL++L+ELPS+RG+DLQ
Sbjct: 75   KAPYGADLMGEFEDALLKQRPDCESGSRLIQLLDNRNKSHIQRRLSELEELPSTRGEDLQ 134

Query: 111  SKCLLEYYGLKLAELQSKVRSDVSAENWLNVKCAYPDRQLFDWGMMRLRRPLYGVGDPFA 170
            +KCLLE YGLKL ELQ KVR+ VS+E WL + CA    Q+FDWGMMRL RP YGVGDPFA
Sbjct: 135  AKCLLELYGLKLRELQGKVRTAVSSEFWLRLNCADVSSQVFDWGMMRLPRPFYGVGDPFA 194

Query: 171  MDADDQLKKKRDVERLSRLEEVEKNHIETRKRKFFAEVLDTVRDFQLQIQASLKRRKQRN 230
            M+ADDQ +KKRD ERLSRLEE EKN IET KRKFFAEVL+ VR+FQLQIQA+ KRR+QRN
Sbjct: 195  MEADDQFRKKRDAERLSRLEEEEKNLIETAKRKFFAEVLNAVREFQLQIQATQKRRRQRN 254

Query: 231  DGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKXXXXXXXXXXXXXXXXXXG 290
            DG+QAWHGRQRQRATRAEKLR  ALKSDDQEAYM++VKESK                  G
Sbjct: 255  DGVQAWHGRQRQRATRAEKLRLMALKSDDQEAYMKLVKESKNERLTTLLEETNKLLANLG 314

Query: 291  AAVQRQKDNKHLDGIEPLEESEADLPESDASKNGVSKESPLDEEID---SDHNGDSRDLL 347
            AAVQRQKD K  +GI+ L++SE+DL E DA ++   ++   D++ID   SD+N DS DLL
Sbjct: 315  AAVQRQKDAKLPEGIDLLKDSESDLSELDAPRSEPLQDLLPDQDIDITESDNNDDSNDLL 374

Query: 348  EGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGK 407
            EGQRQYNSAIHSIQEK+TEQPS+L+GGELR YQ+EGLQWM+SLFNNNLNGILADEMGLGK
Sbjct: 375  EGQRQYNSAIHSIQEKVTEQPSLLEGGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGK 434

Query: 408  TIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMK 467
            TIQTISLIA+LLE KGV GP+LIVAPKAVLPNW++EF+TWVPSI   LYDGRLEERKA++
Sbjct: 435  TIQTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIR 494

Query: 468  EELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQ 527
            E+++GEGKFNVLITHYDLIMRDKAFLKKI W Y+IVDEGHRLKNHESALA+TL +GY I+
Sbjct: 495  EKIAGEGKFNVLITHYDLIMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIK 554

Query: 528  RRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLII 587
            RRLLLTGTPIQN+LQELWSLLNFLLP+IFNSVQNFE+WFNAPFADR +VSLTDEE+LLII
Sbjct: 555  RRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLII 614

Query: 588  RRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGK 647
             RLH VIRPFILRRKKDEVEK LP K+QVILKCDMSAWQKVYY+QVTD+GRVGL  GSGK
Sbjct: 615  HRLHHVIRPFILRRKKDEVEKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGK 674

Query: 648  SKSLQNLTMQLRKCCNHPYLFV-GDYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLL 706
            SKSLQNLTMQLRKCCNHPYLFV GDY+M+K+ EIVRASGKFELLDRLLPKLR+AGHR+LL
Sbjct: 675  SKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASGKFELLDRLLPKLRKAGHRILL 734

Query: 707  FSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGL 766
            FSQMTRL+DVLEIYL L+D+KYLRLDG+TKT++RG LLK+FN PDSPYFMFLLSTRAGGL
Sbjct: 735  FSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGL 794

Query: 767  GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 826
            GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS+EEVILERAKQK
Sbjct: 795  GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQK 854

Query: 827  MGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSDEEFWL 886
            MGIDAKVIQAGLFNTTSTAQDRREMLEEIMR+G+ +LG DVPSEREINRLAARS++EFW+
Sbjct: 855  MGIDAKVIQAGLFNTTSTAQDRREMLEEIMRKGTSSLGTDVPSEREINRLAARSEDEFWM 914

Query: 887  FEKMDEERRQEENYRSRLMEEHELPDWVYSPLNKDDK---AKEFNASVTGKRKRKEVVYA 943
            FE+MDEERR++ENYR+RLM+E E+P+W Y+   +++K    K    SVTGKRKRKE+VY+
Sbjct: 915  FERMDEERRRKENYRARLMQEQEVPEWAYTTQTQEEKLNNGKFHFGSVTGKRKRKEIVYS 974

Query: 944  DTLSDLQWMKAVENGEDMARLSGRGKRRDRVSSDSIAQASDNAVAEESLLYRAESASMAS 1003
            DTLS+LQW+KAVE+GED+++LS R  RR+  +S++    S   +         ES    S
Sbjct: 975  DTLSELQWLKAVESGEDLSKLSMRYNRREENASNTKTSTSKKVI---------ESIQTVS 1025

Query: 1004 ERTSEEDSFHVTPASKRFKPEGTNFQRHAYEDVRGSGLN--QHLLSWNTHRKKRSNF 1058
            + TSEED         +         +   E+  G   N  + +  WNTH+KKRS +
Sbjct: 1026 DGTSEEDEEEQEEERAKEMSGKQRVDKSEEEEEEGEEENDGKAIFKWNTHKKKRSRY 1082


>AT5G19310.1 | Symbols:  | Homeotic gene regulator |
            chr5:6498906-6503432 FORWARD LENGTH=1064
          Length = 1064

 Score = 1372 bits (3552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/1071 (66%), Positives = 839/1071 (78%), Gaps = 53/1071 (4%)

Query: 7    EEEDKKEHAKTLICALNLLSRDLPLPSHLLTSVSSIYH--------------NNHHDDVG 52
            EE D  E  K+LI ALN LSRDL LPSHL  SVSSIYH              N++  + G
Sbjct: 9    EENDPVEKTKSLISALNYLSRDLLLPSHLYASVSSIYHASVSDLSPSPPLRGNSYTPNRG 68

Query: 53   DSGEGLIADLEDAVLNQRLSRVSGSKLEEARGNRYQTQIQNRLNQLQELPSSRGDDLQSK 112
            D    L+++ EDA+L QRL+  SGS+L E +  RY+ +I NRL+QL+ LPS+RG+DLQ K
Sbjct: 69   D----LMSEFEDALLQQRLNYESGSRLAELKETRYKNRIHNRLSQLEGLPSNRGEDLQEK 124

Query: 113  CLLEYYGLKLAELQSKVRSDVSAENWLNVKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMD 172
            CLLE YGLKL ELQ +VR +VSAE WL + CA P+RQL+DWGMMRL R +YGVGD F M+
Sbjct: 125  CLLELYGLKLQELQCRVRGEVSAEYWLRLNCADPERQLYDWGMMRLPRRMYGVGDSFVME 184

Query: 173  ADDQLKKKRDVERLSRLEEVEKNHIETRKRKFFAEVLDTVRDFQLQIQASLKRRKQRNDG 232
            ADDQ + KRD ERL RLEE EKN IET +RKFFAEVL+ VR+FQLQIQAS +R KQRNDG
Sbjct: 185  ADDQFRNKRDAERLLRLEEEEKNLIETTQRKFFAEVLNAVREFQLQIQASHRRCKQRNDG 244

Query: 233  IQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKXXXXXXXXXXXXXXXXXXGAA 292
            +QAWHG+QRQRATRAEKLR  ALKSDDQE YM++ KESK                  GAA
Sbjct: 245  VQAWHGKQRQRATRAEKLRIMALKSDDQEEYMKLAKESKNEKLTLFLEETNKIFVSLGAA 304

Query: 293  VQRQKDNKHLDGIEPLEESEADLPESDASKNGVSKESPLDEEIDSDHNGDSRDLLEGQRQ 352
            VQRQKD K  +  + L+ SE+DL + DA ++ +  +    E IDSD+N DS DLLEG+RQ
Sbjct: 305  VQRQKDAKLSENTKLLKGSESDLSDVDAPEDVLPAQDI--EIIDSDNNDDSNDLLEGERQ 362

Query: 353  YNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTI 412
            +N AIHSIQEK+T+QPS+LQGGELR YQ+EGLQWM+SL+NN+ NGILADEMGLGKTIQTI
Sbjct: 363  FNLAIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTI 422

Query: 413  SLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSG 472
            +LIA+LLE K + GPHLI+APKAVLPNW +EF+ W PSI+  LYDG  E+R  ++  ++G
Sbjct: 423  ALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAG 482

Query: 473  EGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLL 532
             GKFNVLITHYDLIMRDKAFLKKI W Y+IVDEGHRLKNHE ALA+TL +GY I+RRLLL
Sbjct: 483  -GKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLL 541

Query: 533  TGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQ 592
            TGTPIQN+LQELWSLLNFLLP+IFNS+ NFE+WFN PFA+    SLTDEE+LLII RLH 
Sbjct: 542  TGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHH 601

Query: 593  VIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQ 652
            VIRPF+LRRKK EVEK LP K+QVILKCDMSAWQK+YY+QVTDVGRVGL +G+GKSKSLQ
Sbjct: 602  VIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQ 661

Query: 653  NLTMQLRKCCNHPYLFVG-DYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMT 711
            NLTMQLRKCCNHPYLFVG DY+M K+ EIVRASGKFELLDRLLPKL++AGHR+LLFSQMT
Sbjct: 662  NLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMT 721

Query: 712  RLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQ 771
            RL+D+LEIYL L+D+ YLRLDGSTKT++RG LLK+FN PDSPYFMFLLSTRAGGLGLNLQ
Sbjct: 722  RLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQ 781

Query: 772  TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 831
            TADT+IIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS+GSIEEVILERAKQKMGIDA
Sbjct: 782  TADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDA 841

Query: 832  KVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSDEEFWLFEKMD 891
            KVIQAGLFNTTSTAQDRREMLEEIM +G+ +LG DVPSEREINRLAAR++EEFW+FE+MD
Sbjct: 842  KVIQAGLFNTTSTAQDRREMLEEIMSKGTSSLGEDVPSEREINRLAARTEEEFWMFEQMD 901

Query: 892  EERRQEENYRSRLMEEHELPDWVYSPLNKDDK--AKEFNASVTGKRKRKEVVYADTLSDL 949
            EERR++ENY++RLMEE E+P+W Y+   ++DK  AK    S+TGKRKRKE VY+D+LSDL
Sbjct: 902  EERRKKENYKTRLMEEKEVPEWAYTSETQEDKTNAKNHFGSLTGKRKRKEAVYSDSLSDL 961

Query: 950  QWMKAVEN-GEDMARLSGRGKRRDRVSSDSIAQASDNAVAEESLLYRAESASMASERTSE 1008
            QWMKA+E+  ED +++S + KR D  +  S    ++  ++E       E      E   E
Sbjct: 962  QWMKAMESEDEDASKVSQKRKRTDTKTRMSNGSKAEAVLSESDEEKEEEEEERKEESGKE 1021

Query: 1009 EDSFHVTPASKRFKPEGTNFQRHAYEDVRGSGLNQHLLSWNTHRKKRSNFP 1059
             +  +  P                            L SW T++KKRS +P
Sbjct: 1022 SEEENEKP----------------------------LHSWKTNKKKRSRYP 1044


>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3529
          Length = 3529

 Score =  578 bits (1490), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 326/765 (42%), Positives = 465/765 (60%), Gaps = 45/765 (5%)

Query: 162  LYGVGDPFAMDAD--DQLKKKRDVERLSRLEEVE---KNHIETRKRKFFAEVLDTVRDFQ 216
            +Y    P A D +     KK +   R+ +LE+ E   K   + R R+   E    +   +
Sbjct: 539  VYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHK 598

Query: 217  LQIQASLKRRKQRNDGI----QAWHGRQ----RQRATRAEKLRFQALKSDDQEAYMRMVK 268
             +++   K R++R  G     + +H R+    R++  + ++ +   LK +D E Y+RMV+
Sbjct: 599  EKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQ 658

Query: 269  ESKXXXXXXXXXXXXXXXXXXGAAVQRQKDNKHLDGIEPLEESEADLPESDASKNGVSKE 328
            ++K                  G+ ++  K       +    E+EAD      + N    E
Sbjct: 659  DAKSDRVKQLLKETEKYLQKLGSKLKEAK------LLTSRFENEAD---ETRTSNATDDE 709

Query: 329  SPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMI 388
            + ++ E +SD    ++  LE   +Y    HSI+E I EQPS L GG+LR+YQ+ GL+W++
Sbjct: 710  TLIENEDESDQ---AKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLV 766

Query: 389  SLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWV 448
            SL+NN+LNGILADEMGLGKT+Q ISLI +L+E K   GP L+V P +VLP W SE + W 
Sbjct: 767  SLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWA 826

Query: 449  PSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIM--RDKAFLKKIHWRYLIVDEG 506
            PSI  ++Y G  +ER+ + +E     KFNVL+T Y+ +M   D+  L KIHW Y+I+DEG
Sbjct: 827  PSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEG 886

Query: 507  HRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWF 566
            HR+KN    L   L   Y    RLLLTGTP+QNNL+ELW+LLNFLLPNIFNS ++F  WF
Sbjct: 887  HRIKNASCKLNADLKH-YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF 945

Query: 567  NAPFADR-----VDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCD 621
            N PF         +  L++EE LLII RLHQV+RPF+LRR K +VE  LPEK + +++C+
Sbjct: 946  NKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCE 1005

Query: 622  MSAWQKVYYQQVTD-VGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKR--- 677
             SA+QK+  ++V D +G +G    + KS+++ N  M+LR  CNHPYL     +       
Sbjct: 1006 ASAYQKLLMKRVEDNLGSIG----NAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIP 1061

Query: 678  ----KEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDG 733
                  IVR  GK E+LDR+LPKL+   HRVL FS MTRL+DV+E YL L  +KYLRLDG
Sbjct: 1062 KHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDG 1121

Query: 734  STKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAED 793
             T   +RG L+  FN   SP+F+FLLS RAGG+G+NLQ ADTVI+FD+DWNPQ+D QA+ 
Sbjct: 1122 QTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1181

Query: 794  RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLE 853
            RAHRIGQKK+V V    +V S+EE +   A+ K+G+  + I AG F+  ++A+DR+E LE
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLE 1241

Query: 854  EIMRRGSRALGNDVPSEREINRLAARSDEEFWLFEKMDEERRQEE 898
             ++R   +     V  +  +N L AR + E  +FE +D++R++ E
Sbjct: 1242 SLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKENE 1286


>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3543
          Length = 3543

 Score =  578 bits (1490), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 326/765 (42%), Positives = 465/765 (60%), Gaps = 45/765 (5%)

Query: 162  LYGVGDPFAMDAD--DQLKKKRDVERLSRLEEVE---KNHIETRKRKFFAEVLDTVRDFQ 216
            +Y    P A D +     KK +   R+ +LE+ E   K   + R R+   E    +   +
Sbjct: 539  VYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHK 598

Query: 217  LQIQASLKRRKQRNDGI----QAWHGRQ----RQRATRAEKLRFQALKSDDQEAYMRMVK 268
             +++   K R++R  G     + +H R+    R++  + ++ +   LK +D E Y+RMV+
Sbjct: 599  EKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQ 658

Query: 269  ESKXXXXXXXXXXXXXXXXXXGAAVQRQKDNKHLDGIEPLEESEADLPESDASKNGVSKE 328
            ++K                  G+ ++  K       +    E+EAD      + N    E
Sbjct: 659  DAKSDRVKQLLKETEKYLQKLGSKLKEAK------LLTSRFENEAD---ETRTSNATDDE 709

Query: 329  SPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMI 388
            + ++ E +SD    ++  LE   +Y    HSI+E I EQPS L GG+LR+YQ+ GL+W++
Sbjct: 710  TLIENEDESDQ---AKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLV 766

Query: 389  SLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWV 448
            SL+NN+LNGILADEMGLGKT+Q ISLI +L+E K   GP L+V P +VLP W SE + W 
Sbjct: 767  SLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWA 826

Query: 449  PSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIM--RDKAFLKKIHWRYLIVDEG 506
            PSI  ++Y G  +ER+ + +E     KFNVL+T Y+ +M   D+  L KIHW Y+I+DEG
Sbjct: 827  PSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEG 886

Query: 507  HRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWF 566
            HR+KN    L   L   Y    RLLLTGTP+QNNL+ELW+LLNFLLPNIFNS ++F  WF
Sbjct: 887  HRIKNASCKLNADLKH-YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF 945

Query: 567  NAPFADR-----VDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCD 621
            N PF         +  L++EE LLII RLHQV+RPF+LRR K +VE  LPEK + +++C+
Sbjct: 946  NKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCE 1005

Query: 622  MSAWQKVYYQQVTD-VGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKR--- 677
             SA+QK+  ++V D +G +G    + KS+++ N  M+LR  CNHPYL     +       
Sbjct: 1006 ASAYQKLLMKRVEDNLGSIG----NAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIP 1061

Query: 678  ----KEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDG 733
                  IVR  GK E+LDR+LPKL+   HRVL FS MTRL+DV+E YL L  +KYLRLDG
Sbjct: 1062 KHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDG 1121

Query: 734  STKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAED 793
             T   +RG L+  FN   SP+F+FLLS RAGG+G+NLQ ADTVI+FD+DWNPQ+D QA+ 
Sbjct: 1122 QTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1181

Query: 794  RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLE 853
            RAHRIGQKK+V V    +V S+EE +   A+ K+G+  + I AG F+  ++A+DR+E LE
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLE 1241

Query: 854  EIMRRGSRALGNDVPSEREINRLAARSDEEFWLFEKMDEERRQEE 898
             ++R   +     V  +  +N L AR + E  +FE +D++R++ E
Sbjct: 1242 SLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKENE 1286


>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3574
          Length = 3574

 Score =  578 bits (1489), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 326/765 (42%), Positives = 465/765 (60%), Gaps = 45/765 (5%)

Query: 162  LYGVGDPFAMDAD--DQLKKKRDVERLSRLEEVE---KNHIETRKRKFFAEVLDTVRDFQ 216
            +Y    P A D +     KK +   R+ +LE+ E   K   + R R+   E    +   +
Sbjct: 539  VYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHK 598

Query: 217  LQIQASLKRRKQRNDGI----QAWHGRQ----RQRATRAEKLRFQALKSDDQEAYMRMVK 268
             +++   K R++R  G     + +H R+    R++  + ++ +   LK +D E Y+RMV+
Sbjct: 599  EKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQ 658

Query: 269  ESKXXXXXXXXXXXXXXXXXXGAAVQRQKDNKHLDGIEPLEESEADLPESDASKNGVSKE 328
            ++K                  G+ ++  K       +    E+EAD      + N    E
Sbjct: 659  DAKSDRVKQLLKETEKYLQKLGSKLKEAK------LLTSRFENEAD---ETRTSNATDDE 709

Query: 329  SPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMI 388
            + ++ E +SD    ++  LE   +Y    HSI+E I EQPS L GG+LR+YQ+ GL+W++
Sbjct: 710  TLIENEDESDQ---AKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLV 766

Query: 389  SLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWV 448
            SL+NN+LNGILADEMGLGKT+Q ISLI +L+E K   GP L+V P +VLP W SE + W 
Sbjct: 767  SLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWA 826

Query: 449  PSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIM--RDKAFLKKIHWRYLIVDEG 506
            PSI  ++Y G  +ER+ + +E     KFNVL+T Y+ +M   D+  L KIHW Y+I+DEG
Sbjct: 827  PSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEG 886

Query: 507  HRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWF 566
            HR+KN    L   L   Y    RLLLTGTP+QNNL+ELW+LLNFLLPNIFNS ++F  WF
Sbjct: 887  HRIKNASCKLNADLKH-YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF 945

Query: 567  NAPFADR-----VDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCD 621
            N PF         +  L++EE LLII RLHQV+RPF+LRR K +VE  LPEK + +++C+
Sbjct: 946  NKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCE 1005

Query: 622  MSAWQKVYYQQVTD-VGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKR--- 677
             SA+QK+  ++V D +G +G    + KS+++ N  M+LR  CNHPYL     +       
Sbjct: 1006 ASAYQKLLMKRVEDNLGSIG----NAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIP 1061

Query: 678  ----KEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDG 733
                  IVR  GK E+LDR+LPKL+   HRVL FS MTRL+DV+E YL L  +KYLRLDG
Sbjct: 1062 KHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDG 1121

Query: 734  STKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAED 793
             T   +RG L+  FN   SP+F+FLLS RAGG+G+NLQ ADTVI+FD+DWNPQ+D QA+ 
Sbjct: 1122 QTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1181

Query: 794  RAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLE 853
            RAHRIGQKK+V V    +V S+EE +   A+ K+G+  + I AG F+  ++A+DR+E LE
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLE 1241

Query: 854  EIMRRGSRALGNDVPSEREINRLAARSDEEFWLFEKMDEERRQEE 898
             ++R   +     V  +  +N L AR + E  +FE +D++R++ E
Sbjct: 1242 SLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKENE 1286


>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
            regulatory protein SNF2, putative |
            chr2:18923304-18931769 FORWARD LENGTH=2193
          Length = 2193

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/651 (43%), Positives = 402/651 (61%), Gaps = 67/651 (10%)

Query: 352  QYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQT 411
            +Y +  H++ E +  QPS+LQ G LR YQ+ GLQWM+SL+NN LNGILADEMGLGKT+Q 
Sbjct: 957  KYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1016

Query: 412  ISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELS 471
            ++LIA+L+E+KG  GPHLI+ P AVL NW SE  TW+PS++ + Y G  ++R  +  +  
Sbjct: 1017 MALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEV 1076

Query: 472  GEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLL 531
               KFNVL+T Y+ IM D++ L K+ W+Y+I+DE  R+K+ ES LAR LD  Y  QRRLL
Sbjct: 1077 CAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLL 1135

Query: 532  LTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPF-----ADRV-DVSLTDEEQLL 585
            LTGTP+QN+L+ELWSLLN LLP++F++ + F DWF  PF     A  + D  L  E++++
Sbjct: 1136 LTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVI 1195

Query: 586  IIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGS 645
            +I RLHQ++ PF+LRR+ ++VE  LP K  V+L+C MSA Q   Y  +   G + +D   
Sbjct: 1196 VIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDD 1255

Query: 646  GK-------------SKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDR 692
             K              ++L N  M+LRK CNHP L    ++ + +  +VR+ GK  +LDR
Sbjct: 1256 EKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDR 1315

Query: 693  LLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDS 752
            +L KL+R GHRVLLFS MT+L+D+LE YL+     Y R+DG+T  E+R + +  FN PD+
Sbjct: 1316 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDT 1375

Query: 753  PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 812
              F+FLLS RA G GLNLQTADTV+I+D D NP+ ++QA  RAHRIGQ +EV+V  + +V
Sbjct: 1376 DCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAV 1435

Query: 813  --------------------------------GSIEEVILERAKQ-KMGIDAKVIQAGLF 839
                                            GSIE +I    +Q K+ +  +VI AG F
Sbjct: 1436 VEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 1495

Query: 840  NTTSTAQDRREMLEEIMRRGSR--ALGNDVPSEREINRLAARSDEEFWLFEKMDEERRQE 897
            +  +T ++RR  LE ++    R     +DVPS  E+NR+ ARS+EE  LF++MDEE    
Sbjct: 1496 DQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEF--- 1552

Query: 898  ENYRSRLMEEHELPDWVYSPLNKDDKAKEFNASVT--GKRKRKEVVYADTL 946
             ++   +    ++P W+ +        +E NA+V    K+  K ++ +  L
Sbjct: 1553 -DWTEEMTNHEQVPKWLRA------STREVNATVADLSKKPSKNMLSSSNL 1596


>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
            regulatory protein SNF2, putative |
            chr2:18923304-18931769 FORWARD LENGTH=2192
          Length = 2192

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/651 (43%), Positives = 404/651 (62%), Gaps = 68/651 (10%)

Query: 352  QYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQT 411
            +Y +  H++ E +  QPS+LQ G LR YQ+ GLQWM+SL+NN LNGILADEMGLGKT+Q 
Sbjct: 957  KYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1016

Query: 412  ISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELS 471
            ++LIA+L+E+KG  GPHLI+ P AVL NW SE  TW+PS++ + Y G  ++R  +  ++ 
Sbjct: 1017 MALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVK 1076

Query: 472  GEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLL 531
             E KFNVL+T Y+ IM D++ L K+ W+Y+I+DE  R+K+ ES LAR LD  Y  QRRLL
Sbjct: 1077 FE-KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLL 1134

Query: 532  LTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPF-----ADRV-DVSLTDEEQLL 585
            LTGTP+QN+L+ELWSLLN LLP++F++ + F DWF  PF     A  + D  L  E++++
Sbjct: 1135 LTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVI 1194

Query: 586  IIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGS 645
            +I RLHQ++ PF+LRR+ ++VE  LP K  V+L+C MSA Q   Y  +   G + +D   
Sbjct: 1195 VIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDD 1254

Query: 646  GK-------------SKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDR 692
             K              ++L N  M+LRK CNHP L    ++ + +  +VR+ GK  +LDR
Sbjct: 1255 EKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDR 1314

Query: 693  LLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDS 752
            +L KL+R GHRVLLFS MT+L+D+LE YL+     Y R+DG+T  E+R + +  FN PD+
Sbjct: 1315 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDT 1374

Query: 753  PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV 812
              F+FLLS RA G GLNLQTADTV+I+D D NP+ ++QA  RAHRIGQ +EV+V  + +V
Sbjct: 1375 DCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAV 1434

Query: 813  --------------------------------GSIEEVILERAKQ-KMGIDAKVIQAGLF 839
                                            GSIE +I    +Q K+ +  +VI AG F
Sbjct: 1435 VEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 1494

Query: 840  NTTSTAQDRREMLEEIMRRGSR--ALGNDVPSEREINRLAARSDEEFWLFEKMDEERRQE 897
            +  +T ++RR  LE ++    R     +DVPS  E+NR+ ARS+EE  LF++MDEE    
Sbjct: 1495 DQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEF--- 1551

Query: 898  ENYRSRLMEEHELPDWVYSPLNKDDKAKEFNASVT--GKRKRKEVVYADTL 946
             ++   +    ++P W+ +        +E NA+V    K+  K ++ +  L
Sbjct: 1552 -DWTEEMTNHEQVPKWLRA------STREVNATVADLSKKPSKNMLSSSNL 1595


>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
           chr5:6196190-6202058 REVERSE LENGTH=1072
          Length = 1072

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/526 (47%), Positives = 359/526 (68%), Gaps = 20/526 (3%)

Query: 363 KITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYK 422
           ++  QP+ +QG +LR YQ+ GL W+I L+ N +NGILADEMGLGKT+QTISL+A+L EY+
Sbjct: 182 RLLTQPACIQG-KLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 240

Query: 423 GVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITH 482
           G+ GPH++VAPK+ L NWM+E   + P +  V + G  EER+ ++EEL   GKF++ +T 
Sbjct: 241 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTS 300

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           +++ +++K  L++  WRY+I+DE HR+KN  S L++T+   +    RLL+TGTP+QNNL 
Sbjct: 301 FEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTM-RLFSTNYRLLITGTPLQNNLH 359

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRK 602
           ELW+LLNFLLP +F+S + F++WF             + +Q  ++++LH+V+RPF+LRR 
Sbjct: 360 ELWALLNFLLPEVFSSAETFDEWFQIS---------GENDQQEVVQQLHKVLRPFLLRRL 410

Query: 603 KDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCC 662
           K +VEK LP K + ILK  MS  QK YY+ +     + + NG G+ K L N+ MQLRKCC
Sbjct: 411 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKD-LEVVNGGGERKRLLNIAMQLRKCC 469

Query: 663 NHPYLFVG---DYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEI 719
           NHPYLF G            +V  +GK  LLD+LLPKL+    RVL+FSQMTRL+D+LE 
Sbjct: 470 NHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILED 529

Query: 720 YLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 779
           YL    ++Y R+DG+T  +ER   ++ +N P S  F+FLLSTRAGGLG+NL TAD VI++
Sbjct: 530 YLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILY 589

Query: 780 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 839
           DSDWNPQ+D QA+DRAHRIGQKKEV+VF   +  +IE  ++ERA +K+ +DA VIQ G  
Sbjct: 590 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRL 649

Query: 840 NTTSTAQDRREMLEEIMRRGSRAL---GNDVPSEREINRLAARSDE 882
               T    ++ L +++R G+  +    +   ++ +I+R+ A+ +E
Sbjct: 650 AEQKTVN--KDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 693


>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
           chr5:6196190-6202058 REVERSE LENGTH=1069
          Length = 1069

 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/526 (47%), Positives = 359/526 (68%), Gaps = 20/526 (3%)

Query: 363 KITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYK 422
           ++  QP+ +QG +LR YQ+ GL W+I L+ N +NGILADEMGLGKT+QTISL+A+L EY+
Sbjct: 182 RLLTQPACIQG-KLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 240

Query: 423 GVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITH 482
           G+ GPH++VAPK+ L NWM+E   + P +  V + G  EER+ ++EEL   GKF++ +T 
Sbjct: 241 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTS 300

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           +++ +++K  L++  WRY+I+DE HR+KN  S L++T+   +    RLL+TGTP+QNNL 
Sbjct: 301 FEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTM-RLFSTNYRLLITGTPLQNNLH 359

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRK 602
           ELW+LLNFLLP +F+S + F++WF             + +Q  ++++LH+V+RPF+LRR 
Sbjct: 360 ELWALLNFLLPEVFSSAETFDEWFQIS---------GENDQQEVVQQLHKVLRPFLLRRL 410

Query: 603 KDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCC 662
           K +VEK LP K + ILK  MS  QK YY+ +     + + NG G+ K L N+ MQLRKCC
Sbjct: 411 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKD-LEVVNGGGERKRLLNIAMQLRKCC 469

Query: 663 NHPYLFVG---DYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEI 719
           NHPYLF G            +V  +GK  LLD+LLPKL+    RVL+FSQMTRL+D+LE 
Sbjct: 470 NHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILED 529

Query: 720 YLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 779
           YL    ++Y R+DG+T  +ER   ++ +N P S  F+FLLSTRAGGLG+NL TAD VI++
Sbjct: 530 YLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILY 589

Query: 780 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLF 839
           DSDWNPQ+D QA+DRAHRIGQKKEV+VF   +  +IE  ++ERA +K+ +DA VIQ G  
Sbjct: 590 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRL 649

Query: 840 NTTSTAQDRREMLEEIMRRGSRAL---GNDVPSEREINRLAARSDE 882
               T    ++ L +++R G+  +    +   ++ +I+R+ A+ +E
Sbjct: 650 AEQKTVN--KDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 693


>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1055
          Length = 1055

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/528 (47%), Positives = 359/528 (67%), Gaps = 24/528 (4%)

Query: 363 KITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYK 422
           ++  QPS +QG ++R YQ+ GL W+I L+ N +NGILADEMGLGKT+QTISL+A+L EY+
Sbjct: 177 RLLTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 235

Query: 423 GVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITH 482
           G+ GPH++VAPK+ L NWM+E   + P +  V + G  EER+ ++E+L   GKF++ +T 
Sbjct: 236 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTS 295

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           +++ +++K  L++  WRY+I+DE HR+KN  S L++T+   +    RLL+TGTP+QNNL 
Sbjct: 296 FEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTM-RLFSTNYRLLITGTPLQNNLH 354

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRK 602
           ELW+LLNFLLP IF+S + F++WF             + +Q  ++++LH+V+RPF+LRR 
Sbjct: 355 ELWALLNFLLPEIFSSAETFDEWFQIS---------GENDQQEVVQQLHKVLRPFLLRRL 405

Query: 603 KDEVEKCLPEKSQVILKCDMSAWQKVYYQQV--TDVGRVGLDNGSGKSKSLQNLTMQLRK 660
           K +VEK LP K + ILK  MS  QK YY+ +   D+  V   N  G+ K L N+ MQLRK
Sbjct: 406 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAV---NAGGERKRLLNIAMQLRK 462

Query: 661 CCNHPYLFVG---DYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVL 717
           CCNHPYLF G            ++  +GK  LLD+LLPKL+    RVL+FSQMTRL+D+L
Sbjct: 463 CCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDIL 522

Query: 718 EIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 777
           E YL    + Y R+DG+T  +ER   ++ +N P S  F+FLLSTRAGGLG+NL TAD VI
Sbjct: 523 EDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVI 582

Query: 778 IFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 837
           ++DSDWNPQ+D QA+DRAHRIGQKKEV+VF   +  +IEE ++ERA +K+ +DA VIQ G
Sbjct: 583 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQG 642

Query: 838 LFNTTSTAQDRREMLEEIMRRGSRAL---GNDVPSEREINRLAARSDE 882
                 T    ++ L +++R G+  +    +   ++ +I+R+ A+ +E
Sbjct: 643 RLAEQKTVN--KDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 688


>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1057
          Length = 1057

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/528 (47%), Positives = 359/528 (67%), Gaps = 24/528 (4%)

Query: 363 KITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYK 422
           ++  QPS +QG ++R YQ+ GL W+I L+ N +NGILADEMGLGKT+QTISL+A+L EY+
Sbjct: 177 RLLTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 235

Query: 423 GVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITH 482
           G+ GPH++VAPK+ L NWM+E   + P +  V + G  EER+ ++E+L   GKF++ +T 
Sbjct: 236 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTS 295

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           +++ +++K  L++  WRY+I+DE HR+KN  S L++T+   +    RLL+TGTP+QNNL 
Sbjct: 296 FEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTM-RLFSTNYRLLITGTPLQNNLH 354

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRK 602
           ELW+LLNFLLP IF+S + F++WF             + +Q  ++++LH+V+RPF+LRR 
Sbjct: 355 ELWALLNFLLPEIFSSAETFDEWFQIS---------GENDQQEVVQQLHKVLRPFLLRRL 405

Query: 603 KDEVEKCLPEKSQVILKCDMSAWQKVYYQQV--TDVGRVGLDNGSGKSKSLQNLTMQLRK 660
           K +VEK LP K + ILK  MS  QK YY+ +   D+  V   N  G+ K L N+ MQLRK
Sbjct: 406 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAV---NAGGERKRLLNIAMQLRK 462

Query: 661 CCNHPYLFVG---DYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVL 717
           CCNHPYLF G            ++  +GK  LLD+LLPKL+    RVL+FSQMTRL+D+L
Sbjct: 463 CCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDIL 522

Query: 718 EIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 777
           E YL    + Y R+DG+T  +ER   ++ +N P S  F+FLLSTRAGGLG+NL TAD VI
Sbjct: 523 EDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVI 582

Query: 778 IFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 837
           ++DSDWNPQ+D QA+DRAHRIGQKKEV+VF   +  +IEE ++ERA +K+ +DA VIQ G
Sbjct: 583 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQG 642

Query: 838 LFNTTSTAQDRREMLEEIMRRGSRAL---GNDVPSEREINRLAARSDE 882
                 T    ++ L +++R G+  +    +   ++ +I+R+ A+ +E
Sbjct: 643 RLAEQKTVN--KDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 688


>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1056
          Length = 1056

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/528 (47%), Positives = 359/528 (67%), Gaps = 24/528 (4%)

Query: 363 KITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYK 422
           ++  QPS +QG ++R YQ+ GL W+I L+ N +NGILADEMGLGKT+QTISL+A+L EY+
Sbjct: 177 RLLTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYR 235

Query: 423 GVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITH 482
           G+ GPH++VAPK+ L NWM+E   + P +  V + G  EER+ ++E+L   GKF++ +T 
Sbjct: 236 GINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTS 295

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           +++ +++K  L++  WRY+I+DE HR+KN  S L++T+   +    RLL+TGTP+QNNL 
Sbjct: 296 FEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTM-RLFSTNYRLLITGTPLQNNLH 354

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRK 602
           ELW+LLNFLLP IF+S + F++WF             + +Q  ++++LH+V+RPF+LRR 
Sbjct: 355 ELWALLNFLLPEIFSSAETFDEWFQIS---------GENDQQEVVQQLHKVLRPFLLRRL 405

Query: 603 KDEVEKCLPEKSQVILKCDMSAWQKVYYQQV--TDVGRVGLDNGSGKSKSLQNLTMQLRK 660
           K +VEK LP K + ILK  MS  QK YY+ +   D+  V   N  G+ K L N+ MQLRK
Sbjct: 406 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAV---NAGGERKRLLNIAMQLRK 462

Query: 661 CCNHPYLFVG---DYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVL 717
           CCNHPYLF G            ++  +GK  LLD+LLPKL+    RVL+FSQMTRL+D+L
Sbjct: 463 CCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDIL 522

Query: 718 EIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 777
           E YL    + Y R+DG+T  +ER   ++ +N P S  F+FLLSTRAGGLG+NL TAD VI
Sbjct: 523 EDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVI 582

Query: 778 IFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 837
           ++DSDWNPQ+D QA+DRAHRIGQKKEV+VF   +  +IEE ++ERA +K+ +DA VIQ G
Sbjct: 583 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQG 642

Query: 838 LFNTTSTAQDRREMLEEIMRRGSRAL---GNDVPSEREINRLAARSDE 882
                 T    ++ L +++R G+  +    +   ++ +I+R+ A+ +E
Sbjct: 643 RLAEQKTVN--KDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 688


>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
            chr2:5544601-5555543 REVERSE LENGTH=1724
          Length = 1724

 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/550 (44%), Positives = 341/550 (62%), Gaps = 41/550 (7%)

Query: 363  KITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYK 422
            K+ EQP  L GG LR YQ+EGL ++++ + N+ N ILADEMGLGKT+Q++S++  L   +
Sbjct: 612  KLDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQ 671

Query: 423  GVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKE-ELSGEGK------ 475
             + GP L+V P + L NW  EF  W+P +  ++Y G    R+  ++ E   E K      
Sbjct: 672  QIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIK 731

Query: 476  FNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGT 535
            FN L+T Y+++++DKA L KI W YL+VDE HRLKN E+ L   L   +  + +LL+TGT
Sbjct: 732  FNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLE-FSTKNKLLITGT 790

Query: 536  PIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIR 595
            P+QN+++ELW+LL+FL P  F +   F + +        ++S  +E +L     LH  +R
Sbjct: 791  PLQNSVEELWALLHFLDPGKFKNKDEFVENYK-------NLSSFNESELA---NLHLELR 840

Query: 596  PFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNG-SGKSKSLQNL 654
            P ILRR   +VEK LP K + IL+ +MS  QK YY+ + +     L+ G  G   SL N+
Sbjct: 841  PHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNI 900

Query: 655  TMQLRKCCNHPYLF-------VGDY-DMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLL 706
             ++L+KCCNHP+LF        GD  D  K  +I+ +SGK  +LD+LL +LR   HRVL+
Sbjct: 901  VVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLI 960

Query: 707  FSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGL 766
            FSQM R++D+L  YL L  F++ RLDGSTK E R   +  FNAP S  F FLLSTRAGGL
Sbjct: 961  FSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGL 1020

Query: 767  GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 826
            G+NL TADTV+IFDSDWNPQ D QA  RAHRIGQ++ V ++  V+  S+EE ILERAK+K
Sbjct: 1021 GINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRK 1080

Query: 827  MGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSDEEFWL 886
            M +D  VIQ         A+ R E  E   ++GS    N++ +   I R  A   EE + 
Sbjct: 1081 MVLDHLVIQK------LNAEGRLEKRE--TKKGSNFDKNELSA---ILRFGA---EELFK 1126

Query: 887  FEKMDEERRQ 896
             +K DEE ++
Sbjct: 1127 EDKNDEESKK 1136


>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
           | chromatin remodeling 1 | chr5:26649050-26652869
           FORWARD LENGTH=764
          Length = 764

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/536 (43%), Positives = 336/536 (62%), Gaps = 29/536 (5%)

Query: 370 ILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHL 429
           +L GG+L+ YQ++G++W+ISL+ N LNGILAD+MGLGKTIQTI  ++HL +  G+ GP+L
Sbjct: 196 LLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHL-KGNGLDGPYL 254

Query: 430 IVAPKAVLPNWMSEFSTWVPSITTVLYDG----RLEERKAMKEELSGEGKFNVLITHYDL 485
           ++AP + L NW +E + + PSI  ++Y G    R E R+    +  G  KF ++IT Y++
Sbjct: 255 VIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGP-KFPIVITSYEV 313

Query: 486 IMRD-KAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQEL 544
            M D K  L+   W+Y+++DEGHRLKNH+  L R L     +  +LLLTGTP+QNNL EL
Sbjct: 314 AMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKH-LKMDNKLLLTGTPLQNNLSEL 372

Query: 545 WSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQ--LLIIRRLHQVIRPFILRRK 602
           WSLLNF+LP+IF S   FE WF+    ++ + +  +EE+    ++ +LH ++RPFILRR 
Sbjct: 373 WSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRM 432

Query: 603 KDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTD------VGRVGLDNGSGKSKSLQNLTM 656
           K +VE  LP K ++I+   M+  QK + + + +      +G   +  G G    L NL +
Sbjct: 433 KCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAI-RGQGWKGKLNNLVI 491

Query: 657 QLRKCCNHPYLFVGDYD---MYKR-KEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTR 712
           QLRK CNHP L  G  D   +Y   +EIV   GKF LL+RLL +L    H+VL+FSQ T+
Sbjct: 492 QLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTK 551

Query: 713 LMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQT 772
           L+D+++ Y     F+  R+DGS K +ER   +K F+   S   +FLLSTRAGGLG+NL  
Sbjct: 552 LLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTA 611

Query: 773 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 832
           ADT I++DSDWNPQMD QA DR HRIGQ K V V+ L +  SIE  +L+RA  K+ ++  
Sbjct: 612 ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHV 671

Query: 833 VIQAGLF-------NTTSTAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSD 881
           VI  G F       +T    +D   +L+E      + +  D+ S+ +++RL  RSD
Sbjct: 672 VIGQGQFHQERAKSSTPLEEEDILALLKEDETAEDKLIQTDI-SDADLDRLLDRSD 726


>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
           remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
           FORWARD LENGTH=1384
          Length = 1384

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/556 (39%), Positives = 323/556 (58%), Gaps = 64/556 (11%)

Query: 336 DSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNL 395
           D DH  + RD                ++    P  L+G  L  YQ+EGL ++   ++   
Sbjct: 249 DVDHKRNPRDF---------------QQFDHTPEFLKG-LLHPYQLEGLNFLRFSWSKQT 292

Query: 396 NGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVL 455
           + ILADEMGLGKTIQ+I+L+A L E   +  PHL++AP + L NW  EF+TW P +  V+
Sbjct: 293 HVILADEMGLGKTIQSIALLASLFEENLI--PHLVIAPLSTLRNWEREFATWAPQMNVVM 350

Query: 456 YDGRLEERKAMKE------------------ELSGEGK-----FNVLITHYDLIMRDKAF 492
           Y G  + R  ++E                  ++S E K     F+VL+T Y++I  D A 
Sbjct: 351 YFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAV 410

Query: 493 LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLL 552
           LK I W  +IVDEGHRLKN +S L  +L + Y    R+LLTGTP+QNNL EL+ L++FL 
Sbjct: 411 LKPIKWECMIVDEGHRLKNKDSKLFSSL-TQYSSNHRILLTGTPLQNNLDELFMLMHFLD 469

Query: 553 PNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPE 612
              F S++ F++ F           +  EEQ   I RLH+++ P +LRR K +V K +P 
Sbjct: 470 AGKFGSLEEFQEEFK---------DINQEEQ---ISRLHKMLAPHLLRRVKKDVMKDMPP 517

Query: 613 KSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDY 672
           K ++IL+ D+S+ QK YY+ +       L    G   SL N+ M+LRK C HPY+  G  
Sbjct: 518 KKELILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVE 577

Query: 673 DMYKR-----KEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFK 727
            +        K+++ + GK +LLD+++ KL+  GHRVL+++Q   ++D+LE Y     ++
Sbjct: 578 PVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQ 637

Query: 728 YLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 787
           Y R+DG     ER   + +FNA +S  F FLLSTRAGGLG+NL TADTVII+DSDWNP  
Sbjct: 638 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 697

Query: 788 DQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQD 847
           D QA  RAHR+GQ  +V ++ L++ G+IEE +++  K+KM ++  V+  G   T +  Q 
Sbjct: 698 DLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV--GKLKTQNINQ- 754

Query: 848 RREMLEEIMRRGSRAL 863
             E L++I+R GS+ L
Sbjct: 755 --EELDDIIRYGSKEL 768


>AT2G44980.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein | chr2:18552440-18556669
           REVERSE LENGTH=851
          Length = 851

 Score =  359 bits (921), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 324/546 (59%), Gaps = 21/546 (3%)

Query: 376 LRQYQIEGLQWMISLFNNNLNGIL-ADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPK 434
           L+ +Q+EG+ W+I  +   +N +L  D+MGLGKT+Q IS +++L   +G+ GP L++ P 
Sbjct: 51  LKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPL 110

Query: 435 AVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEG---KFNVLITHYDLIMRDKA 491
           +V   W+SE + + P++  + Y G    R  M++ +   G    F+VL+T YD+ + D+ 
Sbjct: 111 SVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDIALVDQD 170

Query: 492 FLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFL 551
           FL +I W+Y I+DE  RLKN  S L   L   + I RRLL+TGTPIQNNL ELW+L++F 
Sbjct: 171 FLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFC 230

Query: 552 LPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK--- 608
           +P +F ++  F   F     D +DVS  D+E     + L  ++  F+LRR K  + +   
Sbjct: 231 MPLVFGTLDQFLSAFKET-GDGLDVS-NDKETY---KSLKFILGAFMLRRTKSLLIESGN 285

Query: 609 -CLPEKSQVILKCDMSAWQKVYYQQVTD---VGRVGLDNGSGKSKSLQNLTMQLRKCCNH 664
             LP  +++ +   + + QK  Y  +      G + L +G     SLQN+ +QLRK C+H
Sbjct: 286 LVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSH 345

Query: 665 PYLFVG-DYDMYKRKE-IVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLR 722
           PYLF G + + ++  E +V+ASGK  +LD+LL +L  +GHRVLLFSQMT  +D+L+ ++ 
Sbjct: 346 PYLFPGIEPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFME 405

Query: 723 LHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD 782
           L  + Y RLDGS + EER   +K F+   S  F+F++STRAGG+GLNL  ADTVI ++ D
Sbjct: 406 LRRYSYERLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQD 465

Query: 783 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTT 842
           WNPQ+D+QA  RAHRIGQ   V    LV+  S+EEVIL RA++K+ +   V+   +    
Sbjct: 466 WNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEKE 525

Query: 843 STAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSDEEFWLFEKMD---EERRQEEN 899
               D R ++  + R     + N+     ++  +++ +++   + + ++   EERR E N
Sbjct: 526 EDGGDLRSLVFGLQRFDPEEIHNEESDNLKMVEISSLAEKVVAIRQNVEPDKEERRFEIN 585

Query: 900 YRSRLM 905
               L+
Sbjct: 586 SSDTLL 591


>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
            chr5:18083659-18092162 REVERSE LENGTH=2223
          Length = 2223

 Score =  358 bits (918), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 313/528 (59%), Gaps = 44/528 (8%)

Query: 364  ITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKG 423
            +TEQP  L+GG L  +Q+E L W+   ++ + N ILADEMGLGKT+   + ++ L    G
Sbjct: 677  LTEQPQELRGGALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFG 736

Query: 424  VTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKE------------ELS 471
            V  P L++ P + +PNW+SEFS W P +  V Y G  + R  +++            +  
Sbjct: 737  VARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKP 796

Query: 472  GEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLL 531
               KFNVL+T Y++++ D + L+ + W  L+VDEGHRLKN ES L   L++ +  Q R+L
Sbjct: 797  TSYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNT-FSFQHRVL 855

Query: 532  LTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLH 591
            LTGTP+QNN+ E+++LLNFL P+ F S+ +FE+ F+          LT  E+   +  L 
Sbjct: 856  LTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERFH---------DLTSAEK---VEELK 903

Query: 592  QVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDN-GSGKSK- 649
            +++ P +LRR K +  + +P K++ ++  ++++ Q  YY+ +       L N G G ++ 
Sbjct: 904  KLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQILRNIGKGVAQQ 963

Query: 650  SLQNLTMQLRKCCNHPYLFVGDYDMYKRKEI-----VRASGKFELLDRLLPKLRRAGHRV 704
            S+ N+ MQLRK CNHPYL  G        E      ++AS K  LL  +L  L + GHRV
Sbjct: 964  SMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMRIKASAKLTLLHSMLKVLHKEGHRV 1023

Query: 705  LLFSQMTRLMDVLEIYLRLH--DFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTR 762
            L+FSQMT+L+D+LE YL +      + R+DGS    +R   + +FN  D   F+FLLSTR
Sbjct: 1024 LIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQ-DKNRFVFLLSTR 1082

Query: 763  AGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILER 822
            A GLG+NL TADTVII+DSD+NP  D QA +RAHRIGQ K + V+ LV   S+EE IL+ 
Sbjct: 1083 ACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQL 1142

Query: 823  AKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSE 870
            AK+K+ +D       LF   S +Q      E+I+R G+  L ND   E
Sbjct: 1143 AKKKLMLDQ------LFVNKSGSQKE---FEDILRWGTEELFNDSAGE 1181


>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
           | chr4:15431528-15438443 FORWARD LENGTH=1202
          Length = 1202

 Score =  353 bits (907), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 209/511 (40%), Positives = 303/511 (59%), Gaps = 49/511 (9%)

Query: 368 PSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGP 427
           P  L G  L  YQ+EGL ++   ++   N ILADEMGLGKTIQ+I+ +A L E      P
Sbjct: 218 PEFLTGT-LHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEEN--LSP 274

Query: 428 HLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEE--LSGEG---KFNVLITH 482
           HL+VAP + + NW  EF+TW P +  V+Y G  E R  + E      EG   KF+VL+T 
Sbjct: 275 HLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTT 334

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           Y+++    + L  I W  +I+DEGHRLKN +S L  +L S +  +  +LLTGTP+QNNL 
Sbjct: 335 YEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSL-SQFTSKHIVLLTGTPLQNNLN 393

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRR- 601
           EL++L++FL  + F S++ F+D             +  EEQ   I RLHQ++ P +LRR 
Sbjct: 394 ELFALMHFLDADKFGSLEKFQD-------------INKEEQ---ISRLHQMLAPHLLRRL 437

Query: 602 KKDEVEKCLPEKSQVILKCDMSAWQK-VYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRK 660
           KKD ++  +P K ++IL+ DMS+ QK VY   +T+  +V       K   + N+ M+LR+
Sbjct: 438 KKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAK---ISNVLMKLRQ 494

Query: 661 CCNHPYLFVGDYDMYKRKE--------IVRASGKFELLDRLLPKLRRAGHRVLLFSQMTR 712
            C+HPYL     D   R E        ++ ASGK +LLD+++ KL+  GHRVL+++Q   
Sbjct: 495 VCSHPYLLP---DFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQH 551

Query: 713 LMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQT 772
            + +LE Y    ++ Y R+DG     ER   + +FNA +S  F FLLSTRAGG+G+NL T
Sbjct: 552 TLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLAT 611

Query: 773 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 832
           ADTVII+DSDWNP  D QA  R HR+GQ  +V ++ L+  G++EE ++E  K KM ++  
Sbjct: 612 ADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHL 671

Query: 833 VIQAGLFNTTSTAQDRREMLEEIMRRGSRAL 863
           V+           QD    L++I++ GS+ L
Sbjct: 672 VV-----GKQHLCQDE---LDDIIKYGSKEL 694


>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
           | chr4:15431528-15438443 FORWARD LENGTH=1161
          Length = 1161

 Score =  353 bits (906), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 209/511 (40%), Positives = 303/511 (59%), Gaps = 49/511 (9%)

Query: 368 PSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGP 427
           P  L G  L  YQ+EGL ++   ++   N ILADEMGLGKTIQ+I+ +A L E      P
Sbjct: 177 PEFLTGT-LHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEEN--LSP 233

Query: 428 HLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEE--LSGEG---KFNVLITH 482
           HL+VAP + + NW  EF+TW P +  V+Y G  E R  + E      EG   KF+VL+T 
Sbjct: 234 HLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTT 293

Query: 483 YDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           Y+++    + L  I W  +I+DEGHRLKN +S L  +L S +  +  +LLTGTP+QNNL 
Sbjct: 294 YEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSL-SQFTSKHIVLLTGTPLQNNLN 352

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRR- 601
           EL++L++FL  + F S++ F+D             +  EEQ   I RLHQ++ P +LRR 
Sbjct: 353 ELFALMHFLDADKFGSLEKFQD-------------INKEEQ---ISRLHQMLAPHLLRRL 396

Query: 602 KKDEVEKCLPEKSQVILKCDMSAWQK-VYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRK 660
           KKD ++  +P K ++IL+ DMS+ QK VY   +T+  +V       K   + N+ M+LR+
Sbjct: 397 KKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAK---ISNVLMKLRQ 453

Query: 661 CCNHPYLFVGDYDMYKRKE--------IVRASGKFELLDRLLPKLRRAGHRVLLFSQMTR 712
            C+HPYL     D   R E        ++ ASGK +LLD+++ KL+  GHRVL+++Q   
Sbjct: 454 VCSHPYLLP---DFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQH 510

Query: 713 LMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQT 772
            + +LE Y    ++ Y R+DG     ER   + +FNA +S  F FLLSTRAGG+G+NL T
Sbjct: 511 TLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLAT 570

Query: 773 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAK 832
           ADTVII+DSDWNP  D QA  R HR+GQ  +V ++ L+  G++EE ++E  K KM ++  
Sbjct: 571 ADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHL 630

Query: 833 VIQAGLFNTTSTAQDRREMLEEIMRRGSRAL 863
           V+           QD    L++I++ GS+ L
Sbjct: 631 VV-----GKQHLCQDE---LDDIIKYGSKEL 653


>AT2G44980.2 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein | chr2:18552343-18556669
           REVERSE LENGTH=877
          Length = 877

 Score =  352 bits (902), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 328/562 (58%), Gaps = 34/562 (6%)

Query: 376 LRQYQIEGLQWMISLFNNNLNGIL-ADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPK 434
           L+ +Q+EG+ W+I  +   +N +L  D+MGLGKT+Q IS +++L   +G+ GP L++ P 
Sbjct: 51  LKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPL 110

Query: 435 AVLPNWMSEFSTWVPSITTVLYDG----RLEERKAMKEELSGEGK-----FNVLITHYDL 485
           +V   W+SE + + P++  + Y G    RL+ RK+M + +    K     F+VL+T YD+
Sbjct: 111 SVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDI 170

Query: 486 IMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELW 545
            + D+ FL +I W+Y I+DE  RLKN  S L   L   + I RRLL+TGTPIQNNL ELW
Sbjct: 171 ALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELW 230

Query: 546 SLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDE 605
           +L++F +P +F ++  F   F         + ++++++    + L  ++  F+LRR K  
Sbjct: 231 ALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDVSNDKE--TYKSLKFILGAFMLRRTKSL 288

Query: 606 VEK----CLPEKSQVILKCDMSAWQKVYYQQVTD---VGRVGLDNGSGKSKSLQNLTMQL 658
           + +     LP  +++ +   + + QK  Y  +      G + L +G     SLQN+ +QL
Sbjct: 289 LIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQL 348

Query: 659 RKCCNHPYLFVG-DYDMYKRKE-IVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDV 716
           RK C+HPYLF G + + ++  E +V+ASGK  +LD+LL +L  +GHRVLLFSQMT  +D+
Sbjct: 349 RKACSHPYLFPGIEPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDI 408

Query: 717 LEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPD----------SPYFMFLLSTRAGGL 766
           L+ ++ L  + Y RLDGS + EER   +K F+A            S  F+F++STRAGG+
Sbjct: 409 LQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGV 468

Query: 767 GLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 826
           GLNL  ADTVI ++ DWNPQ+D+QA  RAHRIGQ   V    LV+  S+EEVIL RA++K
Sbjct: 469 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERK 528

Query: 827 MGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREINRLAARSDEEFWL 886
           + +   V+   +        D R ++  + R     + N+     ++  +++ +++   +
Sbjct: 529 LQLSHNVVGDNMEEKEEDGGDLRSLVFGLQRFDPEEIHNEESDNLKMVEISSLAEKVVAI 588

Query: 887 FEKMD---EERRQEENYRSRLM 905
            + ++   EERR E N    L+
Sbjct: 589 RQNVEPDKEERRFEINSSDTLL 610


>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr2:523481-526884 FORWARD LENGTH=763
          Length = 763

 Score =  299 bits (766), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 282/547 (51%), Gaps = 103/547 (18%)

Query: 376 LRQYQIEGLQWMISLFNNNLNG-ILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPK 434
           L+ YQ+ G+ +++ L+   + G ILADEMGLGKTIQ I+ +  L       GPHL+V P 
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272

Query: 435 AVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGK------FNVLITHYDLIMR 488
           +VL NW  E   W PS T + Y G    R A   EL+   K      FNVL+  Y L  R
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHG--AARAAYSRELNSLSKAGKPPPFNVLLVCYSLFER 330

Query: 489 -------DKAFLKKIHWRYLIVDEGHRLKNHESALARTLDS-GYHIQRRLLLTGTPIQNN 540
                  D+  LK+  W  +++DE H LK+  S   + L S   +  +RL+LTGTP+QN+
Sbjct: 331 HSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQND 390

Query: 541 LQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDV-SLTDEEQLLIIRRLHQVIRPFIL 599
           L ELWSLL F+LP+IF +             + VD+  L + E   +I R+  ++ PFIL
Sbjct: 391 LHELWSLLEFMLPDIFTT-------------ENVDLKKLLNAEDTELITRMKSILGPFIL 437

Query: 600 RRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVG----LDNGSGKS------- 648
           RR K +V + L  K Q +    M   Q+  Y++  +  R      L   S KS       
Sbjct: 438 RRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKA 497

Query: 649 ---KSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGK--------FEL-LDR---- 692
              + + N   Q RK  NHP L      +Y  ++++R + K        FE  LDR    
Sbjct: 498 LPKRQISNYFTQFRKIANHPLLI---RRIYSDEDVIRIARKLHPIGAFGFECSLDRVIEE 554

Query: 693 -----------------------------------------LLPKLRRAGHRVLLFSQMT 711
                                                    LLP ++++GHRVL+FSQ T
Sbjct: 555 VKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWT 614

Query: 712 RLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQ 771
            ++D+LE  L +    Y RLDGST+  +R T++  FN  D   F  LLSTRAGG GLNL 
Sbjct: 615 SMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNN-DKSIFACLLSTRAGGQGLNLT 673

Query: 772 TADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDA 831
            ADTVII D D+NPQ+D+QAEDR HRIGQ K V +F LV+  +++E I E AK+K+ +DA
Sbjct: 674 GADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDA 733

Query: 832 KVIQAGL 838
            V+++G+
Sbjct: 734 AVLESGV 740


>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
            binding;ATP binding;nucleic acid
            binding;binding;helicases;ATP binding;DNA
            binding;helicases | chr3:20092361-20103807 FORWARD
            LENGTH=2045
          Length = 2045

 Score =  276 bits (705), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 270/524 (51%), Gaps = 68/524 (12%)

Query: 375  ELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAH-LLEYKGVTG-----PH 428
            +LR+YQ EG+ W+  L    L+GIL D+MGLGKT+Q  +++A    E +G T      P 
Sbjct: 1450 QLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDELDVFPS 1509

Query: 429  LIVAPKAVLPNWMSEFSTWVP-SITTVL-YDGRLEERKAMKEELSGEGKFNVLITHYDLI 486
            +IV P  ++ +W  E   ++  S+ +VL Y G  ++R +++E+ +     NV+IT YD++
Sbjct: 1510 IIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNH---NVIITSYDVV 1566

Query: 487  MRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWS 546
             +D  +L +  W Y I+DEGH +KN +S +   +      Q RL+L+GTPIQNN+ ELWS
Sbjct: 1567 RKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQ-LKAQHRLILSGTPIQNNIMELWS 1625

Query: 547  LLNFLLPNIFNSVQNFEDWFNAPFADRVD--VSLTDEEQ-LLIIRRLHQVIRPFILRRKK 603
            L +FL+P    + + F+  +  P     D   S  D E  +L +  LH+ + PF+LRR K
Sbjct: 1626 LFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1685

Query: 604  DEVEKCLPEKSQVILKCDMSAWQKVYYQQVT------------------DVGRVGLDNGS 645
            +EV   LPEK      CD+S  Q   Y+Q +                  D G   +    
Sbjct: 1686 EEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTK 1745

Query: 646  GKSKSLQNLTMQLRKCCNHPYLFVGD-----------------YDMYKRKEIVRASGKFE 688
              +   Q L   L K C+HP L +GD                  D+      V+ S K  
Sbjct: 1746 ASTHVFQALQY-LLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLV 1804

Query: 689  LLDRLLPK-------------LRRAGHRVLLFSQMTRLMDVLEIYL---RLHDFKYLRLD 732
             L  +L +             L    HRVL+F+Q   L+D++E  L    +    Y+RLD
Sbjct: 1805 ALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLD 1864

Query: 733  GSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAE 792
            GS   E+R  ++K FN+ D    + LL+T  GGLGLNL +ADT++  + DWNP  D QA 
Sbjct: 1865 GSVVPEKRFEIVKAFNS-DPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAM 1923

Query: 793  DRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 836
            DRAHR+GQK+ V V  L+  G++EE ++   K K+ +   VI A
Sbjct: 1924 DRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINA 1967


>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
            binding;binding;helicases;ATP binding;DNA
            binding;helicases | chr3:20092361-20104153 FORWARD
            LENGTH=2129
          Length = 2129

 Score =  276 bits (705), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 270/524 (51%), Gaps = 68/524 (12%)

Query: 375  ELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAH-LLEYKGVTG-----PH 428
            +LR+YQ EG+ W+  L    L+GIL D+MGLGKT+Q  +++A    E +G T      P 
Sbjct: 1481 QLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDELDVFPS 1540

Query: 429  LIVAPKAVLPNWMSEFSTWVP-SITTVL-YDGRLEERKAMKEELSGEGKFNVLITHYDLI 486
            +IV P  ++ +W  E   ++  S+ +VL Y G  ++R +++E+ +     NV+IT YD++
Sbjct: 1541 IIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNH---NVIITSYDVV 1597

Query: 487  MRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWS 546
             +D  +L +  W Y I+DEGH +KN +S +   +      Q RL+L+GTPIQNN+ ELWS
Sbjct: 1598 RKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQ-LKAQHRLILSGTPIQNNIMELWS 1656

Query: 547  LLNFLLPNIFNSVQNFEDWFNAPFADRVD--VSLTDEEQ-LLIIRRLHQVIRPFILRRKK 603
            L +FL+P    + + F+  +  P     D   S  D E  +L +  LH+ + PF+LRR K
Sbjct: 1657 LFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1716

Query: 604  DEVEKCLPEKSQVILKCDMSAWQKVYYQQVT------------------DVGRVGLDNGS 645
            +EV   LPEK      CD+S  Q   Y+Q +                  D G   +    
Sbjct: 1717 EEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTK 1776

Query: 646  GKSKSLQNLTMQLRKCCNHPYLFVGD-----------------YDMYKRKEIVRASGKFE 688
              +   Q L   L K C+HP L +GD                  D+      V+ S K  
Sbjct: 1777 ASTHVFQALQY-LLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLV 1835

Query: 689  LLDRLLPK-------------LRRAGHRVLLFSQMTRLMDVLEIYL---RLHDFKYLRLD 732
             L  +L +             L    HRVL+F+Q   L+D++E  L    +    Y+RLD
Sbjct: 1836 ALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLD 1895

Query: 733  GSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAE 792
            GS   E+R  ++K FN+ D    + LL+T  GGLGLNL +ADT++  + DWNP  D QA 
Sbjct: 1896 GSVVPEKRFEIVKAFNS-DPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAM 1954

Query: 793  DRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 836
            DRAHR+GQK+ V V  L+  G++EE ++   K K+ +   VI A
Sbjct: 1955 DRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINA 1998


>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr3:4065636-4073992 FORWARD LENGTH=2055
          Length = 2055

 Score =  272 bits (696), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 144/343 (41%), Positives = 208/343 (60%), Gaps = 10/343 (2%)

Query: 334 EIDSDHNGDSRDLLEGQR------QYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWM 387
           E+  D++ DS D +          Q     +S  +  T+ P +L+   LR+YQ  GL W+
Sbjct: 489 EVAEDNDKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHS-LREYQHIGLDWL 547

Query: 388 ISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTW 447
           ++++   LNGILADEMGLGKTI TI+L+AHL   KG+ GPHLIV P +V+ NW +EF  W
Sbjct: 548 VTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKW 607

Query: 448 VPSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGH 507
            P+   + Y G  +ERK  ++       F+V IT Y L+++D    K+  W+YLI+DE H
Sbjct: 608 CPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAH 667

Query: 508 RLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFN 567
            +KN +S   +TL   ++ +RR+LLTGTP+QN+L ELWSL++FL+P++F S Q F+DWF 
Sbjct: 668 LIKNWKSQRWQTL-LNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFC 726

Query: 568 APFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQK 627
            P A  V+      ++  +I RLH V+RPF+LRR K +VEK LP K + ++ C +S  Q+
Sbjct: 727 NPIAGMVEGQEKINKE--VIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQR 784

Query: 628 VYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVG 670
             Y+             SG    + ++ MQLRK CNHP LF G
Sbjct: 785 NLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFEG 827



 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 122/165 (73%), Gaps = 1/165 (0%)

Query: 677  RKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTK 736
            R+ I    GK + L  LL KL+  GHR L+F+QMT+++DVLE ++ L+ + Y+RLDGST 
Sbjct: 1067 RRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTP 1126

Query: 737  TEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 796
             EER TL+++FN  +   F+F+LSTR+GG+G+NL  ADTVI +DSDWNP MDQQA+DR H
Sbjct: 1127 PEERQTLMQRFNT-NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCH 1185

Query: 797  RIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNT 841
            RIGQ +EV ++ L+S  +IEE IL++A QK  +D  VIQ G +NT
Sbjct: 1186 RIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNT 1230


>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
           chr2:8129154-8133502 FORWARD LENGTH=1187
          Length = 1187

 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/511 (32%), Positives = 255/511 (49%), Gaps = 68/511 (13%)

Query: 375 ELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPK 434
           +L  YQ  G+QW+  L      GI+ DEMGLGKTIQ +S +  L  +  +  P +I+ P 
Sbjct: 384 KLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSL-HFSKMYKPSIIICPV 442

Query: 435 AVLPNWMSEFSTWVPSI-TTVLYDGRLEERKAMKEELSGEGKF----------------- 476
            +L  W  E   W P     +L+D   +          G+GK                  
Sbjct: 443 TLLRQWRREAQKWYPDFHVEILHDSAQDSGHG-----KGQGKASESDYDSESSVDSDHEP 497

Query: 477 --------------------NVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESAL 516
                                +LIT Y+ +      L  I W Y ++DEGHR++N  S +
Sbjct: 498 KSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDI 557

Query: 517 ARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAP-----FA 571
                    + R +++TG PIQN L ELWSL +F+ P     +  FE  F+ P     +A
Sbjct: 558 TLVCKQLQTVHR-IIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYA 616

Query: 572 DRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQ 631
           +   + ++   +  ++  L  +I P++LRR K +V   L +K++ +L C ++  Q+  Y+
Sbjct: 617 NASPLQVSTAYRCAVV--LRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYR 674

Query: 632 QVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFV-------GDYDMYKRKEIVRAS 684
                  V      G   SL  + + +RK CNHP L          DY   +R      S
Sbjct: 675 AFLASSEVE-QIFDGNRNSLYGIDV-MRKICNHPDLLEREHSHQNPDYGNPER------S 726

Query: 685 GKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLL 744
           GK +++  +L   ++ GHRVLLFSQ  +++D+LE +L  +++ Y R+DG T  ++R  L+
Sbjct: 727 GKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALI 786

Query: 745 KKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEV 804
            +FN  +   F+F+L+T+ GGLG NL  A+ VIIFD DWNP  D QA +RA RIGQKK+V
Sbjct: 787 DEFNNSED-MFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDV 845

Query: 805 RVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 835
            V+ L++ G+IEE +  R   K  +  K+++
Sbjct: 846 TVYRLITRGTIEEKVYHRQIYKHFLTNKILK 876


>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
           chr3:21199612-21207635 FORWARD LENGTH=1507
          Length = 1507

 Score =  253 bits (647), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 126/317 (39%), Positives = 200/317 (63%), Gaps = 16/317 (5%)

Query: 365 TEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGV 424
           T Q   L  G L++YQ++GLQW+++ +   LNGILADEMGLGKTIQ ++ +AHL E K +
Sbjct: 575 TVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 634

Query: 425 TGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSG------EGKFNV 478
            GP L+VAP +VL NW  E S + P + T+ Y G L+ER  +++ ++       +  F++
Sbjct: 635 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHI 694

Query: 479 LITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQ 538
           LIT Y L++ D+ + +++ W+Y+++DE   +K+  S   +TL S ++ + RLLLTGTPIQ
Sbjct: 695 LITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLS-FNCRNRLLLTGTPIQ 753

Query: 539 NNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFI 598
           NN+ ELW+LL+F++P +F++   F +WF+    +  +   T  E  L   RLH +++PF+
Sbjct: 754 NNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQL--NRLHAILKPFM 811

Query: 599 LRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVG--LDNGSG-----KSKSL 651
           LRR K +V   L  K++V + C +S+ Q+ +YQ + +   +    D+  G     K  +L
Sbjct: 812 LRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNL 871

Query: 652 QNLTMQLRKCCNHPYLF 668
            N+ +QLRK CNHP LF
Sbjct: 872 MNIVIQLRKVCNHPELF 888



 Score =  163 bits (412), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTL 743
            SGK + LD LL +LR   HRVLLF+QMT+++++LE Y+    +KYLRLDGS+   +R  +
Sbjct: 1205 SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDM 1264

Query: 744  LKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 803
            ++ F    S  F+FLLSTRAGGLG+NL  ADTVI ++SDWNP +D QA DRAHR+GQ K+
Sbjct: 1265 VRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1323

Query: 804  VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 837
            V V+ L+   ++EE IL RA QK  +   V+  G
Sbjct: 1324 VTVYRLICKETVEEKILHRASQKNTVQQLVMTGG 1357


>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
           chr3:6652799-6658876 REVERSE LENGTH=908
          Length = 908

 Score =  249 bits (636), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 173/510 (33%), Positives = 251/510 (49%), Gaps = 57/510 (11%)

Query: 376 LRQYQIEGLQWMISLFNN-----NLNG-ILADEMGLGKTIQTISLIAHLLEYKGVTGP-- 427
           LR +Q EG+Q+M    +      N+NG ILAD+MGLGKT+Q+I+L+  LL  +G  G   
Sbjct: 180 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLL-CQGFDGTPM 238

Query: 428 ---HLIVAPKAVLPNWMSEFSTWVP---SITTVLYDGRLEERKAMKEELSGEGKFNVLIT 481
               +IV P +++ NW +E   WV     +  +    R +    +           VLI 
Sbjct: 239 VKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLII 298

Query: 482 HYDLI-MRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNN 540
            Y+   M    F +      LI DE HRLKN ++   R L S    +RR+LL+GTP+QN+
Sbjct: 299 SYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALAS-LTCKRRVLLSGTPMQND 357

Query: 541 LQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRR---LHQVIRPF 597
           L+E ++++NF  P       +F  ++ AP     + + T+EE+ L   R   L   +  F
Sbjct: 358 LEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQF 417

Query: 598 ILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQ 657
           ILRR    +   LP K   ++ C M+  Q  Y   +    +  L + + ++K L  +T  
Sbjct: 418 ILRRTNALLSNHLPPKIIEVVCCKMTTLQTTYNGCLCMQLKRALADNAKQTKVLAYITA- 476

Query: 658 LRKCCNHPYLFVGDYDMYKRKEI-------------------------------VRASGK 686
           L+K CNHP L    YD  K                                   V  SGK
Sbjct: 477 LKKLCNHPKLI---YDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGK 533

Query: 687 FELLDRLLPKLRR-AGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLK 745
             +L RLL  LRR    R++L S  T+ +D+     R   + +LRLDGST   +R  L+ 
Sbjct: 534 MHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVN 593

Query: 746 KFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVR 805
           + N P    F FLLS++AGG GLNL  A+ +++FD DWNP  D+QA  R  R GQKK V 
Sbjct: 594 RLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVY 653

Query: 806 VFVLVSVGSIEEVILERAKQKMGIDAKVIQ 835
           V+  +S G+IEE + +R   K G+  KVIQ
Sbjct: 654 VYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQ 682


>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
           chr3:6652799-6658876 REVERSE LENGTH=910
          Length = 910

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 250/512 (48%), Gaps = 59/512 (11%)

Query: 376 LRQYQIEGLQWMISLFNN-----NLNG-ILADEMGLGKTIQTISLIAHLLEYKGVTGP-- 427
           LR +Q EG+Q+M    +      N+NG ILAD+MGLGKT+Q+I+L+  LL  +G  G   
Sbjct: 180 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLL-CQGFDGTPM 238

Query: 428 ---HLIVAPKAVLPNWMSEFSTWVP---SITTVLYDGRLEERKAMKEELSGEGKFNVLIT 481
               +IV P +++ NW +E   WV     +  +    R +    +           VLI 
Sbjct: 239 VKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLII 298

Query: 482 HYDLI-MRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNN 540
            Y+   M    F +      LI DE HRLKN ++   R L S    +RR+LL+GTP+QN+
Sbjct: 299 SYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALAS-LTCKRRVLLSGTPMQND 357

Query: 541 LQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRR---LHQVIRPF 597
           L+E ++++NF  P       +F  ++ AP     + + T+EE+ L   R   L   +  F
Sbjct: 358 LEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQF 417

Query: 598 ILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRV--GLDNGSGKSKSLQNLT 655
           ILRR    +   LP K   ++ C M+  Q   Y        +   L + + ++K L  +T
Sbjct: 418 ILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYIT 477

Query: 656 MQLRKCCNHPYLFVGDYDMYKRKEI-------------------------------VRAS 684
             L+K CNHP L    YD  K                                   V  S
Sbjct: 478 A-LKKLCNHPKLI---YDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELS 533

Query: 685 GKFELLDRLLPKLRR-AGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTL 743
           GK  +L RLL  LRR    R++L S  T+ +D+     R   + +LRLDGST   +R  L
Sbjct: 534 GKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKL 593

Query: 744 LKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 803
           + + N P    F FLLS++AGG GLNL  A+ +++FD DWNP  D+QA  R  R GQKK 
Sbjct: 594 VNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKR 653

Query: 804 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQ 835
           V V+  +S G+IEE + +R   K G+  KVIQ
Sbjct: 654 VYVYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQ 684


>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
           chr5:25592160-25598405 REVERSE LENGTH=1090
          Length = 1090

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 177/550 (32%), Positives = 272/550 (49%), Gaps = 101/550 (18%)

Query: 376 LRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKA 435
           L  +Q EGL W+ SL      GIL D+MGLGKT+Q  S +A L   K +    L+VAPK 
Sbjct: 377 LYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRA-LVVAPKT 435

Query: 436 VLPNWMSEFSTWVPSITTVLYDGRLEERKA--MKEELSGEGKFNVLITHYDLIMRD-KAF 492
           +LP+WM E +T   S  T  Y G   + +   +   L G+G   +L+T YD++  + KA 
Sbjct: 436 LLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKG---ILLTTYDIVRNNTKAL 492

Query: 493 LKKIH-----------WRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNL 541
               H           W Y+I+DEGH +KN  +  A++L        R++++GTPIQNNL
Sbjct: 493 QGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLE-IPSSHRIIISGTPIQNNL 551

Query: 542 QELWSLLNFLLPNIFNSVQNFEDWFNAPFADRV----DVSLTDEEQLL---IIRRLHQVI 594
           +ELW+L NF  P +       ++WF   +   +    D + TD EQ +   + + L + I
Sbjct: 552 KELWALFNFSCPGLLGD----KNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHI 607

Query: 595 RPFILRRKKDEV------EKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKS 648
           +PF LRR K EV         L +K ++++   ++A Q+  Y+   +   + L    G  
Sbjct: 608 QPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLN-SEIVLSAFDG-- 664

Query: 649 KSLQNLTMQLRKCCNHPYLFVG---------------------------------DYDMY 675
             L  LT+ L+K C+HP L                                    D D +
Sbjct: 665 SPLAALTI-LKKICDHPLLLTKRAAEDVLEGMDSTLTQEEAGVAERLAMHIADNVDTDDF 723

Query: 676 KRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGST 735
           + K     S K   +  LL  L   GHRVL+FSQ  +++++++  L  + + +LR+DG+T
Sbjct: 724 QTKN-DSISCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTT 782

Query: 736 KTEERGTLLKKFN----APDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQA 791
           K  +R   +++F     AP     +FLL+++ GGLGL L  AD VI+ D  WNP  D Q+
Sbjct: 783 KAPDRLKTVEEFQEGHVAP-----IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 837

Query: 792 EDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTS-------- 843
            DRA+RIGQ K+V V+ L++  ++EE I  +         +V + GLF T +        
Sbjct: 838 VDRAYRIGQTKDVIVYRLMTSATVEEKIYRK---------QVYKGGLFKTATEHKEQIRY 888

Query: 844 -TAQDRREML 852
            + QD RE+ 
Sbjct: 889 FSQQDLRELF 898


>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
           chr3:21199612-21207635 FORWARD LENGTH=1540
          Length = 1540

 Score =  240 bits (613), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 49/350 (14%)

Query: 365 TEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGV 424
           T Q   L  G L++YQ++GLQW+++ +   LNGILADEMGLGKTIQ ++ +AHL E K +
Sbjct: 575 TVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 634

Query: 425 TGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSG------------ 472
            GP L+VAP +VL NW  E S + P + T+ Y G L+ER  +++ ++             
Sbjct: 635 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRVMFFSTWIIS 694

Query: 473 ---------------------------EGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDE 505
                                      +  F++LIT Y L++ D+ + +++ W+Y+++DE
Sbjct: 695 FDPWAVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDE 754

Query: 506 GHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDW 565
              +K+  S   +TL S ++ + RLLLTGTPIQNN+ ELW+LL+F++P +F++   F +W
Sbjct: 755 AQAIKSSSSIRWKTLLS-FNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEW 813

Query: 566 FNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAW 625
           F+    +  +   T  E  L   RLH +++PF+LRR K +V   L  K++V + C +S+ 
Sbjct: 814 FSKGIENHAEHGGTLNEHQL--NRLHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSR 871

Query: 626 QKVYYQQVTDVGRVG--LDNGSG-----KSKSLQNLTMQLRKCCNHPYLF 668
           Q+ +YQ + +   +    D+  G     K  +L N+ +QLRK CNHP LF
Sbjct: 872 QQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPELF 921



 Score =  163 bits (412), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTL 743
            SGK + LD LL +LR   HRVLLF+QMT+++++LE Y+    +KYLRLDGS+   +R  +
Sbjct: 1238 SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDM 1297

Query: 744  LKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 803
            ++ F    S  F+FLLSTRAGGLG+NL  ADTVI ++SDWNP +D QA DRAHR+GQ K+
Sbjct: 1298 VRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1356

Query: 804  VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAG 837
            V V+ L+   ++EE IL RA QK  +   V+  G
Sbjct: 1357 VTVYRLICKETVEEKILHRASQKNTVQQLVMTGG 1390


>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
           LENGTH=862
          Length = 862

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 147/280 (52%), Gaps = 22/280 (7%)

Query: 376 LRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVT---------- 425
           L ++Q EG+++M +L+ NN  GIL D+MGLGKTIQTI+ +A +    G            
Sbjct: 139 LLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDK 198

Query: 426 GPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDL 485
           GP LI+ P +++ NW SEFS W       +Y G    R  + E+L   G   VL+T +D 
Sbjct: 199 GPVLIICPSSIIHNWESEFSRWASFFKVSVYHG--SNRDMILEKLKARG-VEVLVTSFDT 255

Query: 486 IMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELW 545
                  L  I+W  +I DE HRLKN +S L          ++R+ LTGT +QN + EL+
Sbjct: 256 FRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLE-IKTKKRIGLTGTVMQNKISELF 314

Query: 546 SLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLII-----RRLHQVIRPFILR 600
           +L  ++ P    + ++F D+++ P   ++    T  E+ + I     + L  ++R ++LR
Sbjct: 315 NLFEWVAPGSLGTREHFRDFYDEPL--KLGQRATAPERFVQIADKRKQHLGSLLRKYMLR 372

Query: 601 RKKDE-VEKCLPEKSQVILKCDMSAWQKVYYQQVTDVGRV 639
           R K+E +   +  K   ++ C MS  Q+  YQ++  +  +
Sbjct: 373 RTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQLPEI 412



 Score =  133 bits (334), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 108/178 (60%), Gaps = 4/178 (2%)

Query: 681 VRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEER 740
           V+  GK   L++L+      G ++LLFS   R++D+LE +L    + + RLDGST T  R
Sbjct: 524 VKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLR 583

Query: 741 GTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQ 800
            +L+  FNA  S   +FL+ST+AGGLGLNL +A+ V+IFD +WNP  D QA+DR+ R GQ
Sbjct: 584 QSLVDDFNASPSKQ-VFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQ 642

Query: 801 KKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNT--TSTAQDRREMLEEIM 856
           K+ V VF L+S GS+EE++  R   K  + + +  AG   T      QD +E   E+ 
Sbjct: 643 KRHVVVFRLLSAGSLEELVYTRQVYKQQL-SNIAVAGKMETRYFEGVQDCKEFQGELF 699


>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
           | chr1:17848620-17853731 REVERSE LENGTH=673
          Length = 673

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 54/473 (11%)

Query: 375 ELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPK 434
           +L  +Q EG+++++    +    +LADEMGLGKT+Q I++   + E    + P LI+AP 
Sbjct: 171 KLLPFQREGIEFIL---QHGGRVLLADEMGLGKTLQAIAVTTCVQE----SWPVLIIAPS 223

Query: 435 AVLPNWMSEFSTWV---PS-ITTVLYD-------GRLEERKAMKEELSGEGKFNVLITHY 483
           ++  +W +    W+   PS I  VL         G        K  +  +G FN  I  Y
Sbjct: 224 SLRLHWATMIHQWLHVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGVFN--IVSY 281

Query: 484 DLIMRDKAFLKKIHWRYLIVDEGHRLKNHESA-LARTLDSGYHIQRRLLLTGTPIQNNLQ 542
           D++ +    L  + ++ +I DE H LKN ++   +  L      Q  +LL+GTP  +   
Sbjct: 282 DVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKKAQYAILLSGTPALSRPI 341

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWF--NAPFADRVDVSLTDEEQLLIIRRLHQVIRPFIL- 599
           EL+  L  L P+++ ++  +   +     F      S  DE        LH +++  ++ 
Sbjct: 342 ELFKQLEALYPDVYRNIHEYGGRYCKGGFFGTYQGASNHDE--------LHNLMKATVMI 393

Query: 600 RRKKDEVEKCLPEK--SQVILKC---DMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNL 654
           RR K +V   LP K   QV L     DM     ++++      ++         KSL+ +
Sbjct: 394 RRLKKDVLTELPSKRRQQVFLDLAAKDMKQINALFHELKVVKSKIKDCISEDDIKSLKFI 453

Query: 655 TMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLM 714
              L               +Y    + +     + L+ ++     AG + L+F+    ++
Sbjct: 454 EKNLIN------------KIYTDSAVAKIPAVLDYLENVI----EAGCKFLVFAHHQSML 497

Query: 715 DVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTAD 774
           + L  +L+      +R+DGST    R  L+  F   D      +LS RA G+G+ L  A 
Sbjct: 498 EELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDE-IKAAVLSIRAAGVGITLTAAS 556

Query: 775 TVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKM 827
           TVI  +  W P    QAEDRAHRIGQ   V +  L++  +++++I +  + K+
Sbjct: 557 TVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKL 609


>AT5G43530.1 | Symbols:  | Helicase protein with RING/U-box domain |
           chr5:17489327-17494830 FORWARD LENGTH=1277
          Length = 1277

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 146/323 (45%), Gaps = 58/323 (17%)

Query: 397 GILADEMGLGKTIQTISLI----------------------------AHL-LEYKGVTGP 427
           GILAD MGLGKT+ TI+LI                             H+ L      G 
Sbjct: 683 GILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGG 742

Query: 428 HLIVAPKAVLPNWMSEFSTWV-PSITTVL--YDG-RLEERKAMKEELSGEGKFNVLITHY 483
            LI+ P A+L  W  E  T   P   +VL  Y G R  + KA+         + VL + Y
Sbjct: 743 TLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAY 802

Query: 484 DLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALAR-TLDSGYHIQRRLLLTGTPIQNNLQ 542
              M +  F  +I W  +++DE H +K+ ++  A+ T +   H   R  LTGTP+QN L+
Sbjct: 803 KQDMANSIF-HRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHC--RWCLTGTPLQNKLE 859

Query: 543 ELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRK 602
           +L+SLL FL         + E W N  +  ++     +      ++ +  ++RP +LRR 
Sbjct: 860 DLYSLLCFL---------HVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRT 910

Query: 603 KDEVEK------CLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQN--- 653
           K+  +K       LP     +++C+ S  ++ +Y  +    +V  D    + K L N   
Sbjct: 911 KETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYAN 970

Query: 654 ---LTMQLRKCCNHPYLFVGDYD 673
              L ++LR+CCNHP+L +   D
Sbjct: 971 ILELLLRLRQCCNHPFLVMSRAD 993



 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 5/150 (3%)

Query: 682  RASGKFELLDRLLPKLRRAG--HRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEE 739
            + S K   L + L K++++G   + ++FSQ T  +D+LEI LR   F++LR DG    + 
Sbjct: 1106 KESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKG 1165

Query: 740  RGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIG 799
            R  +LK+FN       + L+S +AGG+GLNL  A +V + D  WNP +++QA  R HRIG
Sbjct: 1166 REKVLKEFNETKQKTIL-LMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIG 1224

Query: 800  QKKEVRVFVLVSVGSIEEVI--LERAKQKM 827
            QK+ V V   +   ++EE +  ++  KQ+M
Sbjct: 1225 QKRTVFVRRFIVKDTVEERMQQVQARKQRM 1254


>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
           chr5:7565374-7570871 REVERSE LENGTH=1029
          Length = 1029

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 156/358 (43%), Gaps = 79/358 (22%)

Query: 396 NGILADEMGLGKTIQTISLI-AH------------------------------------- 417
            GILAD MGLGKT+ TISL+ AH                                     
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKF 473

Query: 418 ------LLEYKGV--TGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEE 469
                 LLE K V   G +LIV P  +L  W +E        +  +Y    + R    + 
Sbjct: 474 LGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKL 533

Query: 470 LSGEGKFNVLITHYDLIMR--------DKAFLKKIHWRYLIVDEGHRLKNHESALARTLD 521
           LS   + +V+IT Y ++          D   +  + W  +++DE H +KN +S ++    
Sbjct: 534 LS---QSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAA- 589

Query: 522 SGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDE 581
           +     RR  LTGTPIQNNL++L+SLL FL    + +   +      PF +       DE
Sbjct: 590 AALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEE------GDE 643

Query: 582 EQLLIIRRLHQVIRPFILRRKKDEVEK------CLPEKSQVILKCDMSAWQKVYYQQVTD 635
             L +++    +++P +LRR K   ++       LP     ++ C++S  ++ +Y  +  
Sbjct: 644 RGLKLVQ---SILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFK 700

Query: 636 VGRVGLDNGSGKSKSLQN------LTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKF 687
             +V  D    + K L N      L ++LR+CC+HP+L +   D  +  ++ + S +F
Sbjct: 701 RSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRF 758



 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTL 743
            S K   L   L  LR +G + +LFSQ T  +D+L+I L  ++F ++RLDG+   ++R  +
Sbjct: 862  SSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKV 921

Query: 744  LKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKE 803
            LK+F+  D    + L+S +AGG+G+NL  A    + D  WNP +++QA  R HRIGQ KE
Sbjct: 922  LKEFSE-DGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKE 980

Query: 804  VRVFVLVSVGSIEEVI--LERAKQKM 827
            V++   +  G++EE +  ++  KQ+M
Sbjct: 981  VKIRRFIVKGTVEERMEAVQARKQRM 1006


>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr1:2724562-2733431 FORWARD LENGTH=1458
          Length = 1458

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 13/164 (7%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYL-------RLHDF-----KYLRL 731
            SGK  LL  +L      G + L+FSQ    +D++E+YL       +   F      + R+
Sbjct: 1093 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1152

Query: 732  DGSTKTEERGTLLKKFNAPDSPYF-MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ 790
            DG T++ ER  L+ +FN PD+      L+STRAG LG+NL  A+ VII D  WNP  D Q
Sbjct: 1153 DGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQ 1212

Query: 791  AEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 834
            A  RA R GQKK V  + L++ G+IEE I +R   K G+ A+V+
Sbjct: 1213 AIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV 1256



 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 151/339 (44%), Gaps = 47/339 (13%)

Query: 355  SAIHSIQEKITEQPSILQGGELRQYQIEGLQWM----------ISLFNNNLNGILADEMG 404
            + +  I E+    P  +   +L+ +Q+ G+++M          +   +  L  ILA  MG
Sbjct: 699  NVVREIGEEAVRVPRSI-SAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMG 757

Query: 405  LGKTIQTISLIAHLLEYKGV-TGPHLIVAPKAVLPNWMSEFSTWVPSITT---VLYDGRL 460
            LGKT Q I+ +   +    +     LIV P  VL NW SEF  W+PS      +   G +
Sbjct: 758  LGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDV 817

Query: 461  EERK--------AMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNH 512
               K         +K+  +  G  N L    D+               L+ DE H +KN 
Sbjct: 818  SRYKFFYERNFWGVKDLNAARGICNALRDGPDI---------------LVCDEAHIIKNT 862

Query: 513  ESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFAD 572
            ++   + L      QRR+ LTG+P+QNNL E + +++F+      S   F + F  P  +
Sbjct: 863  KADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIEN 921

Query: 573  RVDVSLTDEEQLLIIRR---LHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVY 629
               ++ T E+  ++ +R   L++ ++ F+ R   + V+K LP K+  ++   +S  Q++ 
Sbjct: 922  GQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRIL 981

Query: 630  YQQVTDVGRVGLDNGSGKSKSLQNLTMQ---LRKCCNHP 665
            YQ+  ++   G  +G    +  +N       L +  NHP
Sbjct: 982  YQRFLEL--YGFSDGRTDERMRKNFFAAYQVLAQILNHP 1018


>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr1:2724562-2733431 FORWARD LENGTH=1479
          Length = 1479

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 13/164 (7%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYL-------RLHDF-----KYLRL 731
            SGK  LL  +L      G + L+FSQ    +D++E+YL       +   F      + R+
Sbjct: 1114 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1173

Query: 732  DGSTKTEERGTLLKKFNAPDSPYF-MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ 790
            DG T++ ER  L+ +FN PD+      L+STRAG LG+NL  A+ VII D  WNP  D Q
Sbjct: 1174 DGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQ 1233

Query: 791  AEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 834
            A  RA R GQKK V  + L++ G+IEE I +R   K G+ A+V+
Sbjct: 1234 AIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV 1277



 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 52/352 (14%)

Query: 355  SAIHSIQEKITEQPSILQGGELRQYQIEGLQWM----------ISLFNNNLNGILADEMG 404
            + +  I E+    P  +   +L+ +Q+ G+++M          +   +  L  ILA  MG
Sbjct: 699  NVVREIGEEAVRVPRSI-SAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMG 757

Query: 405  LGKTIQTISLIAHLLEYKGV-TGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEER 463
            LGKT Q I+ +   +    +     LIV P  VL NW SEF  W+PS    L       R
Sbjct: 758  LGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPL-------R 810

Query: 464  KAMKEELSGEGKFNVLI-------------THYDLI-----MRDKAFLKKIHWR------ 499
              M  ++S E +F++L              T++  +     ++D    + I         
Sbjct: 811  IFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPD 870

Query: 500  YLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSV 559
             L+ DE H +KN ++   + L      QRR+ LTG+P+QNNL E + +++F+      S 
Sbjct: 871  ILVCDEAHIIKNTKADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 929

Query: 560  QNFEDWFNAPFADRVDVSLTDEEQLLIIRR---LHQVIRPFILRRKKDEVEKCLPEKSQV 616
              F + F  P  +   ++ T E+  ++ +R   L++ ++ F+ R   + V+K LP K+  
Sbjct: 930  PEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 989

Query: 617  ILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQ---LRKCCNHP 665
            ++   +S  Q++ YQ+  ++   G  +G    +  +N       L +  NHP
Sbjct: 990  VISVKLSPLQRILYQRFLEL--YGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039


>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr1:2724562-2733431 FORWARD LENGTH=1479
          Length = 1479

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 13/164 (7%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYL-------RLHDF-----KYLRL 731
            SGK  LL  +L      G + L+FSQ    +D++E+YL       +   F      + R+
Sbjct: 1114 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1173

Query: 732  DGSTKTEERGTLLKKFNAPDSPYF-MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ 790
            DG T++ ER  L+ +FN PD+      L+STRAG LG+NL  A+ VII D  WNP  D Q
Sbjct: 1174 DGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQ 1233

Query: 791  AEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 834
            A  RA R GQKK V  + L++ G+IEE I +R   K G+ A+V+
Sbjct: 1234 AIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV 1277



 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 52/352 (14%)

Query: 355  SAIHSIQEKITEQPSILQGGELRQYQIEGLQWM----------ISLFNNNLNGILADEMG 404
            + +  I E+    P  +   +L+ +Q+ G+++M          +   +  L  ILA  MG
Sbjct: 699  NVVREIGEEAVRVPRSI-SAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMG 757

Query: 405  LGKTIQTISLIAHLLEYKGV-TGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEER 463
            LGKT Q I+ +   +    +     LIV P  VL NW SEF  W+PS    L       R
Sbjct: 758  LGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPL-------R 810

Query: 464  KAMKEELSGEGKFNVLI-------------THYDLI-----MRDKAFLKKIHWR------ 499
              M  ++S E +F++L              T++  +     ++D    + I         
Sbjct: 811  IFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPD 870

Query: 500  YLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSV 559
             L+ DE H +KN ++   + L      QRR+ LTG+P+QNNL E + +++F+      S 
Sbjct: 871  ILVCDEAHIIKNTKADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 929

Query: 560  QNFEDWFNAPFADRVDVSLTDEEQLLIIRR---LHQVIRPFILRRKKDEVEKCLPEKSQV 616
              F + F  P  +   ++ T E+  ++ +R   L++ ++ F+ R   + V+K LP K+  
Sbjct: 930  PEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 989

Query: 617  ILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQ---LRKCCNHP 665
            ++   +S  Q++ YQ+  ++   G  +G    +  +N       L +  NHP
Sbjct: 990  VISVKLSPLQRILYQRFLEL--YGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039


>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr1:2724562-2733431 FORWARD LENGTH=1479
          Length = 1479

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 13/164 (7%)

Query: 684  SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYL-------RLHDF-----KYLRL 731
            SGK  LL  +L      G + L+FSQ    +D++E+YL       +   F      + R+
Sbjct: 1114 SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRI 1173

Query: 732  DGSTKTEERGTLLKKFNAPDSPYF-MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQ 790
            DG T++ ER  L+ +FN PD+      L+STRAG LG+NL  A+ VII D  WNP  D Q
Sbjct: 1174 DGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQ 1233

Query: 791  AEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVI 834
            A  RA R GQKK V  + L++ G+IEE I +R   K G+ A+V+
Sbjct: 1234 AIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV 1277



 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 159/352 (45%), Gaps = 52/352 (14%)

Query: 355  SAIHSIQEKITEQPSILQGGELRQYQIEGLQWM----------ISLFNNNLNGILADEMG 404
            + +  I E+    P  +   +L+ +Q+ G+++M          +   +  L  ILA  MG
Sbjct: 699  NVVREIGEEAVRVPRSI-SAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMG 757

Query: 405  LGKTIQTISLIAHLLEYKGV-TGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEER 463
            LGKT Q I+ +   +    +     LIV P  VL NW SEF  W+PS    L       R
Sbjct: 758  LGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPL-------R 810

Query: 464  KAMKEELSGEGKFNVLI-------------THYDLI-----MRDKAFLKKIHWR------ 499
              M  ++S E +F++L              T++  +     ++D    + I         
Sbjct: 811  IFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPD 870

Query: 500  YLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSV 559
             L+ DE H +KN ++   + L      QRR+ LTG+P+QNNL E + +++F+      S 
Sbjct: 871  ILVCDEAHIIKNTKADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 929

Query: 560  QNFEDWFNAPFADRVDVSLTDEEQLLIIRR---LHQVIRPFILRRKKDEVEKCLPEKSQV 616
              F + F  P  +   ++ T E+  ++ +R   L++ ++ F+ R   + V+K LP K+  
Sbjct: 930  PEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 989

Query: 617  ILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQ---LRKCCNHP 665
            ++   +S  Q++ YQ+  ++   G  +G    +  +N       L +  NHP
Sbjct: 990  VISVKLSPLQRILYQRFLEL--YGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039


>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
           chr2:9179622-9182356 REVERSE LENGTH=816
          Length = 816

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 221/514 (42%), Gaps = 74/514 (14%)

Query: 375 ELRQYQIEGLQWMISLFNNNLNG------ILADEMGLGKTIQTISLIAHLLEYKGVTGPH 428
           E+R +Q EG +++     NNL        ILA   G GKT   IS +   +       P 
Sbjct: 264 EMRPHQTEGFRFLC----NNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARP- 318

Query: 429 LIVAPKAVLPNWMSEFSTW-VPSITTV-LYDGRLEERKAMKEELS-----------GEGK 475
           L+V PK ++ +W  EF+ W V  I  +  Y  + E RK   + L            G  +
Sbjct: 319 LVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILFLGYQQ 378

Query: 476 FNVLIT--HYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLT 533
           F  +I   +++    D   +       LI+DEGH  +N E+ +  +L +    +R+++LT
Sbjct: 379 FTRIICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSL-ARVKTRRKVVLT 437

Query: 534 GTPIQNNLQELWSLLNFLLPNIF-------------------------NSVQNFEDWFNA 568
           GT  QNN++E++++L+ + P                             S  + E  F A
Sbjct: 438 GTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSSSSIEGTFFA 497

Query: 569 PFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQK- 627
                +  S     +  +I+ L ++ R  IL   K +    LP  S+  +  ++S+ Q+ 
Sbjct: 498 AVELTLQRSTNFSAKASLIKDLREMTRN-ILHYHKADFSGLLPGLSEFTVMLNLSSIQRD 556

Query: 628 --------VYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKE 679
                     ++Q++ +G     +   KS   +N +    K  +     V   D   +K 
Sbjct: 557 EVKGLRKMELFKQIS-LGAALYIHPKLKSFLEENPS-NGEKGFSDNNTTVMKLDKMLKKI 614

Query: 680 IVRASGKFELLDRLLPKLRRAGHRVLLFSQ-------MTRLMDVLEIYLRLHDFKYLRLD 732
            VR   K +    LL      G ++L+FSQ       + RLM  ++ + RL   +   + 
Sbjct: 615 NVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSMKGW-RLGK-EMFTIT 672

Query: 733 GSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAE 792
           G +  E+R   +++FN       +F  S +A G G++L  A  V+I D   NP + QQA 
Sbjct: 673 GDSSNEQREWSMERFNNSLEAK-VFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAV 731

Query: 793 DRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQK 826
            RA+R GQK++V  + LV+  S EE   E   +K
Sbjct: 732 ARAYRPGQKRKVYAYKLVAADSPEEENYETCTRK 765


>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
            chr1:1618795-1623195 REVERSE LENGTH=1410
          Length = 1410

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 155/339 (45%), Gaps = 34/339 (10%)

Query: 501  LIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQ 560
            L++DE H  +N  S + +TL S    Q+R+LL+GTP QNN  EL ++L    P     + 
Sbjct: 1008 LVLDEAHTPRNQRSCIWKTL-SKVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLT 1066

Query: 561  NFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKC 620
            +           R   +L +E     I  L  V+ PF+   K   ++  LP   + ++  
Sbjct: 1067 STLKKSGMTVTKRGKKNLGNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLRECVVVL 1126

Query: 621  DMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLF----VGDYDMYK 676
            +    Q+   + +           + K+K++     +L     HP L     + + +   
Sbjct: 1127 NPPELQRRVLESIEVTH-------NRKTKNVFETEHKLSLVSVHPSLVSRCKISEKERLS 1179

Query: 677  RKEIVRA-----------SGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLR--L 723
              E + A           S K   L   +        +VL+FSQ    +D L++ ++  +
Sbjct: 1180 IDEALLAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQY---IDPLKLIMKHLV 1236

Query: 724  HDFKY------LRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVI 777
              FK+      L + G  + ++R TL+ +FN P S   +FL ST+A   G++L  A  VI
Sbjct: 1237 SRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVI 1296

Query: 778  IFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 816
            + D  WNP +++QA  RA+RIGQK+ V  + LV+ G+ E
Sbjct: 1297 LLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPE 1335


>AT5G07810.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / HNH endonuclease
           domain-containing protein | chr5:2491412-2498484 REVERSE
           LENGTH=1190
          Length = 1190

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 219/525 (41%), Gaps = 73/525 (13%)

Query: 343 SRDLLEGQRQYNSAIHSIQEKITEQPSILQ---GGELRQYQIEGLQWMISLFNNNLNGIL 399
           S+  + G+ Q     H  +EK+ +    L       L  +Q++GL++ +          +
Sbjct: 168 SQSYISGKWQPCLPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLRFGL---RRGGRCFI 224

Query: 400 ADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTV---LY 456
           ADEMGLGKT+Q I++    +      G  L+V P  +   W  E   W+PS       L 
Sbjct: 225 ADEMGLGKTLQAIAIAGCFIS----EGSILVVCPAVLRFTWAEELERWLPSCLPSDVHLV 280

Query: 457 DGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRL-----KN 511
            G  +    +           V++  Y ++   +  + +  W  LIVDE H L     K+
Sbjct: 281 FGHQDNPAYLPRWP------KVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKS 334

Query: 512 HESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFN-------------- 557
               +   LD    ++  +LL+GTP  +   +++  +N L P +                
Sbjct: 335 DPPEIKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEVG 394

Query: 558 ---SVQN--FEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPE 612
               +Q   F+D+        +++ L    Q ++IRRL Q +    L  K+ ++   L +
Sbjct: 395 LVRGIQGKIFQDFSKGTRLLELNILLN---QTVMIRRLKQHLL-TQLPPKRRQIVTILLK 450

Query: 613 KSQVILKCDMSAWQKV----YYQQVTD--------------VGRVGLDNGSGKSKSLQNL 654
           KS + L   + +  K        +VT+               G V  +N  G +   +N 
Sbjct: 451 KSDIALAMAIVSEAKKQKDGAIAEVTEKSHEPDQNARGSNEAGHVNAENSDGPNSDKEN- 509

Query: 655 TMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDRLLPKLR--RAGHRVLLFSQMTR 712
             QL  C    Y  +G   +   +E +        LD    ++   R+  ++++F+   +
Sbjct: 510 --QL--CGKLSYQQLGIAKLSAFREWLSLHPLLSGLDYTPEEIDGDRSSTKMVVFAHHHK 565

Query: 713 LMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQT 772
           ++D ++ ++      ++R+DG+T   +R   ++ F    S   + ++   AGG+GL+   
Sbjct: 566 VLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQF-SSEVKIAIIGVEAGGVGLDFSA 624

Query: 773 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 817
           A  V+  +    P +  QAEDRAHR GQ   V V++  +  +++E
Sbjct: 625 AQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDE 669


>AT5G05130.1 | Symbols:  | DNA/RNA helicase protein |
           chr5:1512173-1514918 FORWARD LENGTH=862
          Length = 862

 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 79/123 (64%), Gaps = 1/123 (0%)

Query: 705 LLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPD-SPYFMFLLSTRA 763
           ++FSQ  +++ +LE  L+   F  LRLDG+   ++R  ++ +F  P+ +   + L S +A
Sbjct: 710 VVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKA 769

Query: 764 GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERA 823
            G G+NL  A  V +FD  WNP +++QA DR HRIGQK+EV++  +++  SIEE +LE  
Sbjct: 770 SGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQ 829

Query: 824 KQK 826
           ++K
Sbjct: 830 QKK 832



 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 215/536 (40%), Gaps = 116/536 (21%)

Query: 315 LPESDASKNGVSKESPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKIT-EQPSILQG 373
           + ESD S  G+S+   + E++    NGD R + +  +  +  +  + + +  E P  +  
Sbjct: 154 ISESDTS-FGLSEAVVVKEQMG---NGDKRSVDKIFKLVDENVKLMGKLVAAEPPREVIK 209

Query: 374 GELRQYQIEGLQWMI----------------SLFNNNLN-------------GILADEMG 404
            EL  +Q EGL W++                  F N L              G+ AD+MG
Sbjct: 210 SELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMG 269

Query: 405 LGKTIQTISLIAH------------------------------------------LLEYK 422
           LGKT+  +SLIA                                            L+  
Sbjct: 270 LGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLKTD 329

Query: 423 GVTGPH------LIVAPKAVLPNWMSEFST-WVPSITTV-LYDGRLEERKAMKEELSGEG 474
            V G +      LIV P +V+  W+++     VP I  V +Y G   ER     EL    
Sbjct: 330 DVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHG--GERTDDVNELM--- 384

Query: 475 KFNVLITHYDLIMRDKAF----LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRL 530
           K+++++T Y  +  ++++    +KK+ W  +I+DE H +KN  +  +R +       RR 
Sbjct: 385 KYDIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVV-CKLKASRRW 443

Query: 531 LLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRL 590
            +TGTPIQN   +L+SL+ FL    F+    ++     P        L+         RL
Sbjct: 444 AVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLS---------RL 494

Query: 591 HQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQ----QVTDVGRVGLDNGS- 645
             ++    LRR K++    LP K+      ++S  ++  Y     +   V +  ++NGS 
Sbjct: 495 QVLMATISLRRTKEKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSL 554

Query: 646 -GKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVR-ASGKFELLDRLLPKLRRAG-- 701
                ++ ++ ++LR+ C+   L   +   +     V   + K ELL +L+  L+     
Sbjct: 555 MRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAALQDGEDF 614

Query: 702 HRVLLFSQMTRLM--DVLEIYLRLHDFKYLRLDGSTKTEERGTLLKK--FNAPDSP 753
              +  S  T ++      I+ R    + L+         RG+L +   +NAP  P
Sbjct: 615 DCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPP 670


>AT1G02670.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:576046-580299
           FORWARD LENGTH=678
          Length = 678

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 141/331 (42%), Gaps = 64/331 (19%)

Query: 376 LRQYQIEGLQW-MISLFNNNLNGILADEMGLGKTIQTISLIAHLLEY-----KGVTGPHL 429
           L +YQ E L W  I   +    GILADEMG+GKTIQ ISL+    E      +   G  L
Sbjct: 134 LLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHTL 193

Query: 430 IVAPKAVLPNWMSEFSTWV-PSITTVL-YDGRLEERKAMKEELSGEGKFNVLITHYDLIM 487
           ++ P   L  W+ E S    P  T VL Y G   ++   K            + +YD ++
Sbjct: 194 VLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQK------------LMNYDFVL 241

Query: 488 RDKAF-----------------LKKIHWRYLIVDEGHRLKNHESALAR---TLDSGYHIQ 527
                                 L  I W  +IVDE H +KN  S  A+    L++ Y   
Sbjct: 242 TTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATY--- 298

Query: 528 RRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLII 587
            R  L+GTP+QN++ EL+SL+++   N F S         A FA R    +T    + + 
Sbjct: 299 -RWALSGTPLQNDVDELYSLVSYSFLNFFYSTY-------ASFAFR-HTHITFARNVTVK 349

Query: 588 RRLHQVIRPFILRRKKDEVEKCLPEKSQVIL----KCDMSAWQKVYYQQVTDVGRVGLDN 643
             +   I P  +  + + V   L  +    L    +  +S  +  +Y+ +  V +   D 
Sbjct: 350 FLIGGNILPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFD- 408

Query: 644 GSGKSKSLQN-------LTMQLRKCCNHPYL 667
           G  ++ +L N       L ++LR+  +HPYL
Sbjct: 409 GYIQAGTLMNNYAHIFGLLIRLRQAVDHPYL 439



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 3/125 (2%)

Query: 703 RVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNA-PDSPYFMFLLST 761
           + ++FSQ T  +D++   L       ++L GS     +   LK F   PD    + L+S 
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCR--VLLMSL 584

Query: 762 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 821
           +AGG+ LNL  A  V + D  WNP +++QA+DR HRIGQ K VRV   +   ++EE IL 
Sbjct: 585 QAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILT 644

Query: 822 RAKQK 826
             K+K
Sbjct: 645 LQKKK 649


>AT3G16600.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr3:5652839-5655670 REVERSE LENGTH=638
          Length = 638

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 133/317 (41%), Gaps = 100/317 (31%)

Query: 353 YNSAIHSIQEKITEQ---PSILQGGELRQYQIEGLQWMIS---LFNNNLNGILADEMGLG 406
           Y +A+  +++  TE+   P +L    +R  +I  L WM        + L GILAD+ GLG
Sbjct: 28  YQAALQDLKQPKTEKDLPPGVLTVPLMRHQKI-ALNWMRKKEKRSRHCLGGILADDQGLG 86

Query: 407 KTIQTISLIAHLLEY----------KGV-TGPHLIVAPKAVLPNWMSEFSTWVPSITTVL 455
           KTI TISLI  LL+           KG  +G  LIV P +V+  W  E            
Sbjct: 87  KTISTISLI--LLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWARE------------ 132

Query: 456 YDGRLEERKAMKEELSGEGKFNVLITH-------------YDLIMRDKAF---------- 492
                     +KE++S E K +VL+ H             YD++M   A           
Sbjct: 133 ----------VKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPM 182

Query: 493 -------------------------LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQ 527
                                    L ++ W  +++DE H +KNH + +A+   S    +
Sbjct: 183 LNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFS-LRAK 241

Query: 528 RRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLII 587
           RR  LTGTPI+N + +L+S   FL  + +    +F     AP          D++ L   
Sbjct: 242 RRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPI---------DKKPLHGY 292

Query: 588 RRLHQVIRPFILRRKKD 604
           ++L  ++R  +LRR K+
Sbjct: 293 KKLQAILRGIMLRRTKE 309



 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 46/78 (58%)

Query: 757 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 816
            L+S +AG LGLN+  A  VI+ D  WNP  + QA DRAHRIGQ + V V  +    ++E
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVE 569

Query: 817 EVILERAKQKMGIDAKVI 834
           E IL   ++K  I A  +
Sbjct: 570 ERILTLHERKRNIVASAL 587


>AT1G11100.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:3703934-3709302 REVERSE LENGTH=1226
          Length = 1226

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 81/356 (22%)

Query: 376 LRQYQIEGLQWMI---SLFNNNLNGILADEMGLGKTIQTISLIA---------------- 416
           L ++Q   L WM    +  N    GILAD+ GLGKT+ TI+LI                 
Sbjct: 542 LLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKN 601

Query: 417 ---------------------HLLEYKG-VTGPHLIVAPKAVLPNWMSEF---STWVPSI 451
                                 L + +G      LIV P +++  W  E     T    +
Sbjct: 602 GGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAHL 661

Query: 452 TTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAF-----------LKKIHWRY 500
           + ++Y G    R     EL+   K++V+IT Y L+ + K             L ++ W  
Sbjct: 662 SVLVYHGC--SRTKDPHELA---KYDVVITTYSLVSKRKHMDCEPVEFLSGPLAQVSWFR 716

Query: 501 LIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQ 560
           +++DE   +KN+++  A    SG H +RR  L+GTPIQN++ +L+S   FL  + ++S Q
Sbjct: 717 VVLDEAQSIKNYKTQ-ASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQ 775

Query: 561 NFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK-----CLPEKSQ 615
            F +    P +     S   E      + L  +++  +LRR KD +        LP KS 
Sbjct: 776 TFCETIKNPIS-----SYPGEG----YKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSI 826

Query: 616 VILKCDMSAWQKVYYQQVT----DVGRVGLDNGSGKSKSLQNLTM--QLRKCCNHP 665
            + + D +  ++ +Y ++     D  +   + G+ K   +  L M  +LR+ C HP
Sbjct: 827 ELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 882



 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 5/131 (3%)

Query: 700  AGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNA-PDSPYFMFL 758
            AG + ++F+Q T+++D+LE  L+    +Y R DG      R   ++ FN  PD    + +
Sbjct: 1070 AGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPD--VSVMI 1127

Query: 759  LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 818
            +S +A  LGLN+  A  VI+ D  WNP  + QA DRAHRIGQ + V+V       ++E+ 
Sbjct: 1128 MSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDR 1187

Query: 819  I--LERAKQKM 827
            I  L++ K+KM
Sbjct: 1188 ILALQQKKRKM 1198


>AT1G05120.1 | Symbols:  | Helicase protein with RING/U-box domain |
           chr1:1471624-1476067 REVERSE LENGTH=833
          Length = 833

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 698 RRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNA-PDSPYFM 756
           R    + ++FSQ T  +D++   L       ++L GS     R T + KF   PD    +
Sbjct: 677 RDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCR--V 734

Query: 757 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 816
           FL+S +AGG+ LNL  A  V + D  WNP +++QA+DR HRIGQ K +RV   +   ++E
Sbjct: 735 FLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVE 794

Query: 817 EVILERAKQK 826
           E IL   K+K
Sbjct: 795 ERILRLQKKK 804



 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 75/175 (42%), Gaps = 32/175 (18%)

Query: 352 QYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNNLNGILADEMGLGKTIQT 411
           Q+N+ I     +  E PS L    LR YQ E L W      +   GILADEMG+GKTIQ 
Sbjct: 120 QHNAVI----AETAEPPSDLIMPLLR-YQKEFLAWATKQEQSVAGGILADEMGMGKTIQA 174

Query: 412 ISLI--------AHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWV-PSITTVLYDGRLEE 462
           ISL+        A   E  G T   L++ P   +  W++E + +  P  T VL     + 
Sbjct: 175 ISLVLARREVDRAQFGEAAGCT---LVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKR 231

Query: 463 RKAMKE------------ELSGEGKFNVLITHYDLIMRDKAFLKK---IHWRYLI 502
            K +KE             +  E + N++ +        K+F  K   IH RY  
Sbjct: 232 AKNIKEFMNYDFVLTTYSTVESEYRRNIMPSKVQCAYCSKSFYPKKLVIHLRYFC 286


>AT1G11100.2 | Symbols:  | SNF2 domain-containing protein / helicase
            domain-containing protein / zinc finger protein-related |
            chr1:3703934-3709302 REVERSE LENGTH=1269
          Length = 1269

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 5/131 (3%)

Query: 700  AGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNA-PDSPYFMFL 758
            AG + ++F+Q T+++D+LE  L+    +Y R DG      R   ++ FN  PD    + +
Sbjct: 1113 AGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPD--VSVMI 1170

Query: 759  LSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEV 818
            +S +A  LGLN+  A  VI+ D  WNP  + QA DRAHRIGQ + V+V       ++E+ 
Sbjct: 1171 MSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDR 1230

Query: 819  I--LERAKQKM 827
            I  L++ K+KM
Sbjct: 1231 ILALQQKKRKM 1241



 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 21/184 (11%)

Query: 493 LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLL 552
           L ++ W  +++DE   +KN+++  A    SG H +RR  L+GTPIQN++ +L+S   FL 
Sbjct: 752 LAQVSWFRVVLDEAQSIKNYKTQ-ASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLK 810

Query: 553 PNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK---- 608
            + ++S Q F +    P +     S   E      + L  +++  +LRR KD +      
Sbjct: 811 YDPYSSYQTFCETIKNPIS-----SYPGEG----YKTLQAILKKVMLRRTKDTLLDGKPV 861

Query: 609 -CLPEKSQVILKCDMSAWQKVYYQQVT----DVGRVGLDNGSGKSKSLQNLTM--QLRKC 661
             LP KS  + + D +  ++ +Y ++     D  +   + G+ K   +  L M  +LR+ 
Sbjct: 862 ISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQA 921

Query: 662 CNHP 665
           C HP
Sbjct: 922 CGHP 925


>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
            helicase domain-containing protein / zinc finger
            protein-related | chr1:22535038-22539756 REVERSE
            LENGTH=1122
          Length = 1122

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 697  LRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFM 756
            ++ AG + ++FSQ T+++++LE  L     +Y RLDG+     R   ++ FN       M
Sbjct: 961  IKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVM 1020

Query: 757  FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 816
             ++S +A  LGLN+  A  V++ D  WNP  + QA DRAHRIGQ + V V       ++E
Sbjct: 1021 -IMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVE 1079

Query: 817  EVILERAKQK 826
            + IL   ++K
Sbjct: 1080 DRILALQQKK 1089



 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 21/193 (10%)

Query: 493 LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLL 552
           L K+ W  +++DE   +KN+++ +AR    G   +RR  L+GTPIQN++ +L+S   FL 
Sbjct: 624 LAKVSWFRVVLDEAQSIKNYKTQVARAC-WGLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 682

Query: 553 PNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK---- 608
            + ++S   F      P              +   ++L  +++  +LRR K  +      
Sbjct: 683 YDPYSSYVLFCSTIKNPIT---------RNPVKGYQKLQAILKTVMLRRTKGSLLDGKPI 733

Query: 609 -CLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGL----DNGSGKSKSLQNLTM--QLRKC 661
             LP KS  + K D +  ++ +Y ++    R       + G+ K   +  L M  +LR+ 
Sbjct: 734 ISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQA 793

Query: 662 CNHPYLFVGDYDM 674
           C+HP L  G+Y  
Sbjct: 794 CDHPLLVNGEYSF 806


>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
            helicase domain-containing protein / zinc finger
            protein-related | chr1:22535038-22540610 REVERSE
            LENGTH=1280
          Length = 1280

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 697  LRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFM 756
            ++ AG + ++FSQ T+++++LE  L     +Y RLDG+     R   ++ FN       M
Sbjct: 1119 IKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVM 1178

Query: 757  FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIE 816
             ++S +A  LGLN+  A  V++ D  WNP  + QA DRAHRIGQ + V V       ++E
Sbjct: 1179 -IMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVE 1237

Query: 817  EVILERAKQK 826
            + IL   ++K
Sbjct: 1238 DRILALQQKK 1247



 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 21/191 (10%)

Query: 493 LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLL 552
           L K+ W  +++DE   +KN+++ +AR    G   +RR  L+GTPIQN++ +L+S   FL 
Sbjct: 782 LAKVSWFRVVLDEAQSIKNYKTQVARAC-WGLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 840

Query: 553 PNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK---- 608
            + ++S   F      P              +   ++L  +++  +LRR K  +      
Sbjct: 841 YDPYSSYVLFCSTIKNPIT---------RNPVKGYQKLQAILKTVMLRRTKGSLLDGKPI 891

Query: 609 -CLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGL----DNGSGKSKSLQNLTM--QLRKC 661
             LP KS  + K D +  ++ +Y ++    R       + G+ K   +  L M  +LR+ 
Sbjct: 892 ISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQA 951

Query: 662 CNHPYLFVGDY 672
           C+HP L  G+Y
Sbjct: 952 CDHPLLVNGEY 962


>AT1G50410.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:18672828-18677365 FORWARD LENGTH=981
          Length = 981

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 5/128 (3%)

Query: 703 RVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKF-NAPDSPYFMFLLST 761
           + ++FSQ T ++D++E+ L  +  ++ RLDG+     R   +K+F N PD    + ++S 
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPD--VKVMIMSL 885

Query: 762 RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVI-- 819
           +AG LGLN+  A  VI+ D  WNP  + QA DRAHRIGQ + V V  +    ++E+ I  
Sbjct: 886 KAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILA 945

Query: 820 LERAKQKM 827
           L+  K+KM
Sbjct: 946 LQEEKRKM 953



 Score = 73.9 bits (180), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 21/191 (10%)

Query: 489 DKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLL 548
           D   L K+ W  +++DE   +KNH + +AR    G   +RR  L+GTPIQN + +L+S  
Sbjct: 462 DSGTLAKVGWFRVVLDEAQTIKNHRTQVARAC-CGLRAKRRWCLSGTPIQNTIDDLYSYF 520

Query: 549 NFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK 608
            FL  + +   ++F      P +            L   ++L  V+R  +LRR K  +  
Sbjct: 521 RFLKYDPYAVYKSFCHQIKGPIS---------RNSLQGYKKLQAVLRAIMLRRTKGTLLD 571

Query: 609 C-----LPEKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQN------LTMQ 657
                 LP K+  + + D S  ++ +Y ++    R      +      QN      + ++
Sbjct: 572 GQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLR 631

Query: 658 LRKCCNHPYLF 668
           LR+ C+HP L 
Sbjct: 632 LRQACDHPQLV 642


>AT3G20010.1 | Symbols:  | SNF2 domain-containing protein / helicase
            domain-containing protein / zinc finger protein-related |
            chr3:6971352-6976340 FORWARD LENGTH=1047
          Length = 1047

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 703  RVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNA-PDSPYFMFLLST 761
            + ++FSQ T ++D++E+ +     ++ RLDG+     R   +K+F+  PD    + L+S 
Sbjct: 894  KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPD--VKVMLMSL 951

Query: 762  RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILE 821
            +AG LGLN+  A  VI+ D  WNP  + QA DRAHRIGQ + V V  +    ++E+ IL+
Sbjct: 952  KAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILK 1011

Query: 822  RAKQK 826
              ++K
Sbjct: 1012 LQEEK 1016



 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 21/191 (10%)

Query: 489 DKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLL 548
           D   L K+ W  +++DE   +KN+ + +AR+  +    +RR  L+GTPIQN + +L+S  
Sbjct: 533 DCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCT-LRAKRRWCLSGTPIQNTIDDLYSYF 591

Query: 549 NFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK 608
            FL  + +   ++F      P +                ++L  V+R  +LRR K  +  
Sbjct: 592 RFLRYDPYAVYKSFYSTIKVPIS---------RNSCQGYKKLQAVLRAIMLRRTKGTLLD 642

Query: 609 C-----LPEKSQVILKCDMSAWQKVYYQQVTDVGRVGL----DNG--SGKSKSLQNLTMQ 657
                 LP K   + + D S  ++ +Y+++    R       D G  S    ++  L ++
Sbjct: 643 GKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLR 702

Query: 658 LRKCCNHPYLF 668
           LR+ C+HP L 
Sbjct: 703 LRQACDHPQLV 713


>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
            chr3:8832085-8835722 REVERSE LENGTH=1132
          Length = 1132

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 46/335 (13%)

Query: 501  LIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLP----NIF 556
            L++DEGH  +N  S + + L +    ++R+ L+GT  QNN +EL ++L    P     I 
Sbjct: 744  LVLDEGHTPRNQSSLIWKVL-TEVRTEKRIFLSGTLFQNNFKELSNVLCLARPADKDTIS 802

Query: 557  NSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQV 616
            + +             RV+     EE  ++   L  +I  F+   +   +++ LP     
Sbjct: 803  SRIHELSKCSQEGEHGRVN-----EENRIV--DLKAMIAHFVHVHEGTILQESLPGLRDC 855

Query: 617  ILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYK 676
            ++  +    QK    ++              S++      +L     HP L++   +  K
Sbjct: 856  VVVLNPPFQQKKILDRID------------TSQNTFEFEHKLSAVSVHPSLYLC-CNPTK 902

Query: 677  RKEIVRASGKFELLDRLLPK-------------LRRAG---HRVLLFSQ-MTRLMDVLEI 719
            ++++V        L RL  K             +R +G    +VL++SQ +  L  ++E 
Sbjct: 903  KEDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQ 962

Query: 720  YLRLHDF----KYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADT 775
             +   D+    + L + G  +  +R  ++  FN PDS   + L ST+A   G++L  A  
Sbjct: 963  LIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASR 1022

Query: 776  VIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLV 810
            V+I D  WNP ++ QA  RA RIGQK+ V ++ L+
Sbjct: 1023 VVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLM 1057


>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr2:7097638-7101182 FORWARD LENGTH=888
          Length = 888

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 19/201 (9%)

Query: 372 QGGELRQYQIEGLQWMIS-LFNNNLNG-ILADEMGLGKTIQTISLIAHLLEYKGVTGPHL 429
              E++ +QIEG Q++ S L  ++  G I+A   G GKT   IS +   L       P L
Sbjct: 346 HAAEMKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKP-L 404

Query: 430 IVAPKAVLPNWMSEFSTW-VPSITTV-LYDGRLEER----KAMKEELSGEGKFNVLITHY 483
           +V PK +LP W  EF  W V  I  +  Y  + E R      +K+ +  +    +    +
Sbjct: 405 VVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSILFLGYQQF 464

Query: 484 DLIMRD--------KAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGT 535
             I+ D        +  L K+    LI+DEGH  +N ++ L ++L +     R+++L+GT
Sbjct: 465 STIVCDDTTDSLSCQEILLKVP-SILILDEGHTPRNEDTNLLQSL-AQVQTPRKVVLSGT 522

Query: 536 PIQNNLQELWSLLNFLLPNIF 556
             QN+++E++++LN + P   
Sbjct: 523 LYQNHVKEVFNILNLVRPKFL 543



 Score = 60.5 bits (145), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 8/124 (6%)

Query: 700 AGHRVLLFSQMTRLMDVLEIYLRLHDF-----KYLRLDGSTKTEERGTLLKKFNA-PDSP 753
           AG ++L+FSQ    +  LE    L        +   L G+T +E+R   ++ FN+ PD+ 
Sbjct: 709 AGEKLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAK 768

Query: 754 YFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVG 813
             +F  S +A G G++L  A  ++I D   NP + +QA  RA R GQKK V  + L++  
Sbjct: 769 --IFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGS 826

Query: 814 SIEE 817
           S EE
Sbjct: 827 SPEE 830


>AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family
           protein | chr1:2501981-2510488 REVERSE LENGTH=2001
          Length = 2001

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 650 SLQNLTMQLRKCCNHPY--------LFVGDYDMYKRKEI-VRASGKFELLDRLLPKLRRA 700
           +L+     +RK C+HPY        L   + ++++  ++ ++ASGK  LLD++L  +++ 
Sbjct: 515 ALEETLNSVRKTCDHPYVMDASLKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKKN 574

Query: 701 GHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAP------DSPY 754
           G + ++F Q T+  + L +   L DF   R     K+ E G    K N+       +S  
Sbjct: 575 GLKAVVFYQATQTPEGLLLGNILEDFVGQRF--GPKSYEHGIYSSKKNSAINNFNKESQC 632

Query: 755 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 814
            + LL TRA    + L  AD  I+F S  NP  D +  ++       +  ++F L SV +
Sbjct: 633 CVLLLETRACSQTIKLLRADAFILFGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCT 692

Query: 815 IEEVILERAKQ 825
           +EE  L  A+Q
Sbjct: 693 VEEKALILARQ 703


>AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family
           protein | chr1:2501981-2510488 REVERSE LENGTH=2001
          Length = 2001

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 650 SLQNLTMQLRKCCNHPY--------LFVGDYDMYKRKEI-VRASGKFELLDRLLPKLRRA 700
           +L+     +RK C+HPY        L   + ++++  ++ ++ASGK  LLD++L  +++ 
Sbjct: 515 ALEETLNSVRKTCDHPYVMDASLKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKKN 574

Query: 701 GHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAP------DSPY 754
           G + ++F Q T+  + L +   L DF   R     K+ E G    K N+       +S  
Sbjct: 575 GLKAVVFYQATQTPEGLLLGNILEDFVGQRF--GPKSYEHGIYSSKKNSAINNFNKESQC 632

Query: 755 FMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGS 814
            + LL TRA    + L  AD  I+F S  NP  D +  ++       +  ++F L SV +
Sbjct: 633 CVLLLETRACSQTIKLLRADAFILFGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCT 692

Query: 815 IEEVILERAKQ 825
           +EE  L  A+Q
Sbjct: 693 VEEKALILARQ 703


>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
            chr5:6899015-6903266 REVERSE LENGTH=1261
          Length = 1261

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 53/89 (59%)

Query: 729  LRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 788
            L L G  +  ERG ++ KF  P +P  + L S  A   G++L  A  VI+ DS+WNP   
Sbjct: 1111 LTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKT 1170

Query: 789  QQAEDRAHRIGQKKEVRVFVLVSVGSIEE 817
            +QA  RA R GQ+K V V+ L+S G++EE
Sbjct: 1171 KQAIARAFRPGQQKVVYVYQLLSRGTLEE 1199


>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
           helicase domain-containing protein / zinc finger
           protein-related | chr1:22536293-22540610 REVERSE
           LENGTH=1022
          Length = 1022

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 21/193 (10%)

Query: 493 LKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLL 552
           L K+ W  +++DE   +KN+++ +AR    G   +RR  L+GTPIQN++ +L+S   FL 
Sbjct: 789 LAKVSWFRVVLDEAQSIKNYKTQVARAC-WGLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 847

Query: 553 PNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEK---- 608
            + ++S   F      P              +   ++L  +++  +LRR K  +      
Sbjct: 848 YDPYSSYVLFCSTIKNPIT---------RNPVKGYQKLQAILKTVMLRRTKGSLLDGKPI 898

Query: 609 -CLPEKSQVILKCDMSAWQKVYYQQVTDVGRVGL----DNGSGKSKSLQNLTM--QLRKC 661
             LP KS  + K D +  ++ +Y ++    R       + G+ K   +  L M  +LR+ 
Sbjct: 899 ISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQA 958

Query: 662 CNHPYLFVGDYDM 674
           C+HP L  G+Y  
Sbjct: 959 CDHPLLVNGEYSF 971


>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
            chr3:14755906-14760085 REVERSE LENGTH=1256
          Length = 1256

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 703  RVLLFSQ-MTRLMDVLEIYLRLHDFK----YLRLDGSTKTEERGTLLKKFNAPDSPYFMF 757
            ++L+F   +  +   LE++  +  +K     L L G  +  ERG ++ KF  P     + 
Sbjct: 1074 KILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVL 1133

Query: 758  LLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEE 817
            L S  A   G++L  A  VI+ DS+WNP   +QA  RA R GQ+K V V+ L+S G++EE
Sbjct: 1134 LASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEE 1193


>AT2G40770.1 | Symbols:  | zinc ion binding;DNA
           binding;helicases;ATP binding;nucleic acid binding |
           chr2:17013535-17021315 REVERSE LENGTH=1664
          Length = 1664

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 66/295 (22%)

Query: 425 TGPHLIVAPKAVLPNWMSEFS--TWVPSITTVLYDG----RLEERKAMKEELSGEGKFNV 478
           TG  LIV P  +LP W SE +  T + S+ T +Y+G     L E   +  +++     ++
Sbjct: 499 TGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMI--DITELLNADI 556

Query: 479 LITHYDLIMRDKAF------------------------LKKIHWRYLIVDEGHRLKNHES 514
           ++T YD++  D                           L +I W  + +DE   ++++ +
Sbjct: 557 VLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWRICLDEAQMVESNAA 616

Query: 515 ALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRV 574
           A A  +    + + R  +TGTPIQ  L +L+ LL FL  N F+  + + +    P+ +R 
Sbjct: 617 A-ATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWWIEVIRDPY-ERR 674

Query: 575 DVSLTDEEQLLIIRRLHQVIRPFILRRKKDEV--EKCLPEKSQVILKCDMSAWQKVYYQQ 632
           D           +   H+  +  + R  K  V  E  LP + + +     SA ++ +Y +
Sbjct: 675 DTK--------AMEFTHKFFKQVMWRSSKVHVADELQLPPQEECVSWLKFSAIEEHFYSR 726

Query: 633 VTDV-------------------GRVGLDN---GSGKSKSLQNLTMQLRKCCNHP 665
             D                    G    DN      ++  L N  ++LR+ C HP
Sbjct: 727 QHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHP 781



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 703  RVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDS---------- 752
            +VL+FS    ++DVLE     +    +R+ G  K++   T + KF   +           
Sbjct: 1451 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQ---TAISKFKGSEKETQKTNSHQK 1507

Query: 753  ---PYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 809
                  + LL  + G  GLNL  A  VI+ +   NP  + QA  R HRIGQ+K   V   
Sbjct: 1508 EEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRF 1567

Query: 810  VSVGSIEEVILERAKQK 826
            +  G++EE I +  + K
Sbjct: 1568 LVSGTVEESIYKLNRNK 1584


>AT3G54460.1 | Symbols:  | SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein |
            chr3:20162050-20167186 REVERSE LENGTH=1378
          Length = 1378

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 703  RVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKF-NAPDSPYFMFLLST 761
            +VL+FSQ    + V+E  L     K+ ++    ++  +   L  F N  D    M LL  
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADC---MALLMD 1251

Query: 762  RAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVIL 820
             +G LGL+L     V + +  W+  +++Q   RAHR+G K+ + V  L   G+IEE ++
Sbjct: 1252 GSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMM 1310