Miyakogusa Predicted Gene

Lj5g3v2057410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2057410.1 tr|B9HHH4|B9HHH4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_719300 PE=4
SV=1,31.51,0.0000005,seg,NULL,CUFF.56567.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05980.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   150   9e-37
AT5G19340.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   138   5e-33

>AT3G05980.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins
           in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39;
           Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes -
           11 (source: NCBI BLink). | chr3:1795514-1796251 FORWARD
           LENGTH=245
          Length = 245

 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 125/212 (58%), Gaps = 4/212 (1%)

Query: 54  SPRISFSAEFLDDENFISISPNPVYERDHQEKEQRNPEFEFLSSKGSNNNTVVTADELFF 113
            PRISFS++  D  +FI I+P    E D  +   +  +FEFLSS+  +   ++TADELF 
Sbjct: 16  GPRISFSSDLSDGGDFICITPVMCKE-DVVKGSVKVSDFEFLSSENVSPQRMLTADELFS 74

Query: 114 EGKLLPFWQMQHLEKLNKISLKPKDERXXXXXXXXXXXXXXSNSNKEDSSRVNNWFVDDD 173
           EGKLLPFWQ++H EKL  I+LK  +E                 +N+++  RV  WF+D+D
Sbjct: 75  EGKLLPFWQVKHSEKLKNITLKTNEEEEAEKRKVEVKKKDQEINNRDN--RVT-WFIDED 131

Query: 174 PSPRPPKCTVLWKELLRLKKQRXXXXXXXXXXXXXXXXXXXLGDVAAKEGKDGTRSKDQQ 233
           PSPRPPKCTVLWKELLRLKKQR                       ++       R + ++
Sbjct: 132 PSPRPPKCTVLWKELLRLKKQRNPSSSPVTARTVSSLSPSSSTSSSSSLEDAAKREEKEK 191

Query: 234 HVKRLKKGLERTRSATIRIRPMINVPICTQVK 265
             KR KKGLERTRSA++RIRPMI+VPICT  K
Sbjct: 192 EGKRGKKGLERTRSASMRIRPMIHVPICTPSK 223


>AT5G19340.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G05980.1); Has 1000 Blast hits to 906 proteins
           in 61 species: Archae - 0; Bacteria - 4; Metazoa - 62;
           Fungi - 36; Plants - 128; Viruses - 4; Other Eukaryotes
           - 766 (source: NCBI BLink). | chr5:6515371-6516162
           REVERSE LENGTH=263
          Length = 263

 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/215 (43%), Positives = 120/215 (55%), Gaps = 19/215 (8%)

Query: 69  FISISP--NPVYERDHQEKEQ-RNPEFEFLSSKGSNNNTVVTADELFFEGKLLPFWQMQH 125
           FI I+P  N +  R+ ++K   +  +FEFLS     N T+++ADELF EGKLLPFWQ++H
Sbjct: 36  FICINPVMNLIVGREEKDKSSVKAGDFEFLS----ENATMLSADELFSEGKLLPFWQVKH 91

Query: 126 LEKLNKISLKPKDERXXXXXXXXXXXXXXSNSNKEDSSRV---------NNWFVDDDPSP 176
            EKL  ++LKPK E                  NKE  +            +WF+DDDPSP
Sbjct: 92  SEKLKNVTLKPKVEVQQEEEDHKVVNEEGFVHNKEQENNNNNNNNNNNRGSWFLDDDPSP 151

Query: 177 RPPKCTVLWKELLRLKKQRXXXXXXXXXXXXXXXXXXXLGDVAAKEGKDG---TRSKDQQ 233
           RPPKCTVLWKELLRLKKQR                       ++     G    + + ++
Sbjct: 152 RPPKCTVLWKELLRLKKQRTTTTTTASTRVSSLSPSSSSSSTSSSSSSIGDAVKKEEREK 211

Query: 234 HVKRLKKGLERTRSATIRIRPMINVPICTQVKSSA 268
             KR KKGLERTRS T+RIRPMI+VP+CT  KSS+
Sbjct: 212 EGKRGKKGLERTRSVTMRIRPMIHVPVCTPSKSSS 246