Miyakogusa Predicted Gene
- Lj5g3v2056280.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2056280.3 Non Chatacterized Hit- tr|Q9M1X1|Q9M1X1_ARATH
Putative uncharacterized protein F16M2_30
OS=Arabidops,33.98,4e-17,seg,NULL,CUFF.56598.3
(534 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22380.1 | Symbols: TIC | time for coffee | chr3:7913181-7918... 83 4e-16
AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7913181-7918... 83 4e-16
AT3G63180.2 | Symbols: ATTKL, TKL | TIC-like | chr3:23336318-233... 67 2e-11
AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like | chr3:23336318-233... 67 2e-11
>AT3G22380.1 | Symbols: TIC | time for coffee | chr3:7913181-7918879
FORWARD LENGTH=1550
Length = 1550
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 51/72 (70%), Gaps = 12/72 (16%)
Query: 142 RKSFPPAKVFRPAPP--------TTWKAADEMIGVSVPRKARSASTKRSHECWASS--GG 191
+ +FPP KVFR +P +TWKAADEMIGVSVPRKARSA TKR HE WASS GG
Sbjct: 171 KNNFPPTKVFRSSPSPAPVSPLVSTWKAADEMIGVSVPRKARSACTKRPHESWASSTTGG 230
Query: 192 GIVA--EQNHRQ 201
G+ A EQ HRQ
Sbjct: 231 GVFASGEQIHRQ 242
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 47/247 (19%)
Query: 245 ASQDEIEIEIAEVLYGMMRQPQGQGPSKQEIIANNHESSSGKFDSREQTNNKSSSDGKXX 304
A QDEIEIEIAEVLYGMMR P SKQE N+ ++ + + S+ +
Sbjct: 303 AVQDEIEIEIAEVLYGMMRMPST---SKQEAAGNDLTEAAKSTVEVKSRVSSPISNPQTL 359
Query: 305 XXXXXXXXXXXAATPMSAVAPKRKRPRPVKNEEENXXXXXXXXXXXXXTTKVESDQPSKM 364
+++ +SA+APKRK+PR VK E++N T K E++ PSK
Sbjct: 360 PQSSITLAANSSSSNVSAIAPKRKKPRHVKYEDDN--------SSRVTTIKSEAEAPSKS 411
Query: 365 ETSSSNSAKNNPGSAAEN--LTNSLPVQASPEPVKPERNNASSDSKALTEESEKQKDAGL 422
+ SN K++ + L + +P+ +NAS DS ++K+ L
Sbjct: 412 QVPFSNQLKSSGSGEGNSSVLDSIIPLT--------RESNASLDS--------EKKENNL 455
Query: 423 NKEVAPPQSPKKESSSTVLQQVDDTSESAVKATKSNQTMNESVNQREEKFQIDLMAPPPT 482
+K+ T+L +V+ +S +S+ +S + +EKF+IDLMAPPP
Sbjct: 456 SKD------------ETILPKVESSS-----GFRSDGEGAKSSSPEKEKFEIDLMAPPPV 498
Query: 483 GKSSPER 489
+SS ER
Sbjct: 499 -RSSSER 504
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1 MDRIREARRTSMAA--NGLTRRRHRTNSLRDSPEEDGGMELQE 41
MDR REARR MAA NGL+RRRHR S RDSPEE+G +EL E
Sbjct: 1 MDRNREARRVPMAAAGNGLSRRRHRAGSFRDSPEEEGPVELPE 43
>AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7913181-7918967
FORWARD LENGTH=1555
Length = 1555
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 51/72 (70%), Gaps = 12/72 (16%)
Query: 142 RKSFPPAKVFRPAPP--------TTWKAADEMIGVSVPRKARSASTKRSHECWASS--GG 191
+ +FPP KVFR +P +TWKAADEMIGVSVPRKARSA TKR HE WASS GG
Sbjct: 171 KNNFPPTKVFRSSPSPAPVSPLVSTWKAADEMIGVSVPRKARSACTKRPHESWASSTTGG 230
Query: 192 GIVA--EQNHRQ 201
G+ A EQ HRQ
Sbjct: 231 GVFASGEQIHRQ 242
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 47/247 (19%)
Query: 245 ASQDEIEIEIAEVLYGMMRQPQGQGPSKQEIIANNHESSSGKFDSREQTNNKSSSDGKXX 304
A QDEIEIEIAEVLYGMMR P SKQE N+ ++ + + S+ +
Sbjct: 303 AVQDEIEIEIAEVLYGMMRMPST---SKQEAAGNDLTEAAKSTVEVKSRVSSPISNPQTL 359
Query: 305 XXXXXXXXXXXAATPMSAVAPKRKRPRPVKNEEENXXXXXXXXXXXXXTTKVESDQPSKM 364
+++ +SA+APKRK+PR VK E++N T K E++ PSK
Sbjct: 360 PQSSITLAANSSSSNVSAIAPKRKKPRHVKYEDDN--------SSRVTTIKSEAEAPSKS 411
Query: 365 ETSSSNSAKNNPGSAAEN--LTNSLPVQASPEPVKPERNNASSDSKALTEESEKQKDAGL 422
+ SN K++ + L + +P+ +NAS DS ++K+ L
Sbjct: 412 QVPFSNQLKSSGSGEGNSSVLDSIIPLT--------RESNASLDS--------EKKENNL 455
Query: 423 NKEVAPPQSPKKESSSTVLQQVDDTSESAVKATKSNQTMNESVNQREEKFQIDLMAPPPT 482
+K+ T+L +V+ +S +S+ +S + +EKF+IDLMAPPP
Sbjct: 456 SKD------------ETILPKVESSS-----GFRSDGEGAKSSSPEKEKFEIDLMAPPPV 498
Query: 483 GKSSPER 489
+SS ER
Sbjct: 499 -RSSSER 504
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1 MDRIREARRTSMAA--NGLTRRRHRTNSLRDSPEEDGGMELQE 41
MDR REARR MAA NGL+RRRHR S RDSPEE+G +EL E
Sbjct: 1 MDRNREARRVPMAAAGNGLSRRRHRAGSFRDSPEEEGPVELPE 43
>AT3G63180.2 | Symbols: ATTKL, TKL | TIC-like |
chr3:23336318-23340161 REVERSE LENGTH=970
Length = 970
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 142 RKSFPPAKVFRPAPPTTWKAADEMIGVSVPRKARSASTKRSHECWASSGGGIVAEQNHRQ 201
RKSF ++ R A + ADEMIGV VPRKARSA KRSH+C SSG
Sbjct: 92 RKSFSSGRIPRHA--ASLMVADEMIGVPVPRKARSACLKRSHDCRTSSG----------- 138
Query: 202 XXXXXXXXXXXXXXXXXXXXXGRKKIKQNGGGPKF-RPPKSSPKASQDEIEIEIAEVLYG 260
RK + NG + +PPKSS +D++EIEIAEVL G
Sbjct: 139 ----SHSCEVVSPSSSTLSVKERKIV--NGSKSRIPKPPKSS-GTVEDDLEIEIAEVLSG 191
Query: 261 MMRQPQ 266
+ +QP
Sbjct: 192 LKKQPH 197
>AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like |
chr3:23336318-23340161 REVERSE LENGTH=978
Length = 978
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 142 RKSFPPAKVFRPAPPTTWKAADEMIGVSVPRKARSASTKRSHECWASSGGGIVAEQNHRQ 201
RKSF ++ R A + ADEMIGV VPRKARSA KRSH+C SSG
Sbjct: 92 RKSFSSGRIPRHA--ASLMVADEMIGVPVPRKARSACLKRSHDCRTSSG----------- 138
Query: 202 XXXXXXXXXXXXXXXXXXXXXGRKKIKQNGGGPKF-RPPKSSPKASQDEIEIEIAEVLYG 260
RK + NG + +PPKSS +D++EIEIAEVL G
Sbjct: 139 ----SHSCEVVSPSSSTLSVKERKIV--NGSKSRIPKPPKSS-GTVEDDLEIEIAEVLSG 191
Query: 261 MMRQPQ 266
+ +QP
Sbjct: 192 LKKQPH 197