Miyakogusa Predicted Gene

Lj5g3v2056280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2056280.1 tr|B9MWL4|B9MWL4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_592674 PE=4
SV=1,39.47,2e-16,seg,NULL; coiled-coil,NULL,CUFF.56598.1
         (831 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7913181-7918...   403   e-112
AT3G22380.1 | Symbols: TIC | time for coffee | chr3:7913181-7918...   403   e-112
AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like | chr3:23336318-233...    79   1e-14
AT3G63180.2 | Symbols: ATTKL, TKL | TIC-like | chr3:23336318-233...    76   9e-14

>AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7913181-7918967
            FORWARD LENGTH=1555
          Length = 1555

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 314/755 (41%), Positives = 390/755 (51%), Gaps = 116/755 (15%)

Query: 8    REEKFQIDLMAPPPTGKSSPER--DVVENNLXXXXXXXXXXXXXXS--LRMNXXXXXXXX 63
             +EKF+IDLMAPPP  +SS ER  +++E                    L+ +        
Sbjct: 484  EKEKFEIDLMAPPPV-RSSSERGGEMMECVAAEAKPKVTEVETEAKPLLKEDRSDPAIHD 542

Query: 64   XXXXXXXXXXSESQKLAIVQKERGIDLQLDLEKADRMDTSGNGSSVSKKXXXXXXXXXXX 123
                      +E++       ER  +L+LDL+K+D +    N   V K            
Sbjct: 543  SQEKKRPRMVAEAEHHKF---ERNCELKLDLDKSDHVGLV-NKHHVQKPPPQQQLSVP-- 596

Query: 124  XXTNSEKNVQTNSLPLPMSVPPNWPGGLPSMGYMTPLQGVVSMDGTTVTPAAI-PPPHLL 182
                 +K  Q + LPL MS+P  WPGGLP+MGYM P QGVV  D ++++ AA+ PPPHLL
Sbjct: 597  -----DKTAQASHLPLHMSMP-GWPGGLPTMGYMAPTQGVVPTDTSSLSAAAMQPPPHLL 650

Query: 183  FNQPRPKRCATHCYIARNILYHQQIARMNPFWPAAAGSAPMYGAKAGNLNVVPSPELLGN 242
            FNQPRPKRCATHCYIARNI  HQQ  +MNPFWPAAAGSAPMYG KA NL+++P  EL G+
Sbjct: 651  FNQPRPKRCATHCYIARNIQSHQQFTKMNPFWPAAAGSAPMYGTKACNLSLMPPTELQGS 710

Query: 243  VPARAVNPTQDKVQSLTMFPSHIGKDKVPQPANVDNSSRKQILLQQGLPPGAAPSNILHG 302
            V  R+ NP QDK    T   S             + + R Q++LQQ LPPGAA S ILHG
Sbjct: 711  VLGRSSNPVQDKNSQSTSKSS-------------ETAQRNQLMLQQALPPGAANS-ILHG 756

Query: 303  PAFIFPLNQQ----QAAAAASVRPGSMKSLPVTSNGXXXXXXXXXXXXXXXXXXXXXTPA 358
            P FIFPL QQ       AAASVRP +     +TS+G                      P 
Sbjct: 757  PTFIFPLGQQPHAAATIAAASVRPPNSG---ITSSG---PTATSTSMNGSASATPAGAPT 810

Query: 359  MSFSYPSMPGNETQYLAILQNNAYPFPIPAHVGGPPAYRGTHGQPPFPFFNGSFYXXXXX 418
            MSFSYP+MPGNETQYLAILQNN YPFP+PAHVG  PAYRG  GQ P PFFNGSFY     
Sbjct: 811  MSFSYPAMPGNETQYLAILQNNGYPFPVPAHVGAQPAYRGAPGQ-PMPFFNGSFYSSQMI 869

Query: 419  XXXXXXXXXXXXXXXXXXXXXX------NTSISTGSS-SQKHAQNQQQKP--NHASSSNG 469
                                        N S STGSS +QKH QNQQ +P  NH      
Sbjct: 870  QPPHHQPQKQHQQQLTGQMLQSHAPNNQNGSASTGSSAAQKHLQNQQLRPPINH------ 923

Query: 470  VGGSLQGFPVTKNPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNHHTSHPA 529
              G+ QGFP  K                                         + T H  
Sbjct: 924  --GNSQGFPTHK-------------------------VQSQPLNFQQRQQPRENATQH-- 954

Query: 530  RQVENEMGGEDSPSTADSRFTRAAMNIYGQNFAMPMQAPNFALMT---PAISGAGSNGSH 586
                +E  GEDSPSTADSR +R+ +  YGQN+ M MQ  N  LM+   P     GS+ SH
Sbjct: 955  ----SETVGEDSPSTADSRGSRSNV-AYGQNYGMQMQPTNLGLMSSPAPGGGVVGSSSSH 1009

Query: 587  GEKKQPQQQHPGSKAGGET--SPAFAMSFASINGAAAATGLDLSSFAHNHSIMQS--NHN 642
            GEKK  QQ    SKAG E+  SP +AM+FA+ NGA  A  L++SS A NH++  S     
Sbjct: 1010 GEKKSQQQV---SKAGVESFQSPGYAMTFATFNGANTAPTLNMSSIAQNHAMFHSMPEAA 1066

Query: 643  YQIMAGAQAASAQLKKNYHA-VEEGKN-----VANSSNL-EEDRKSMSGKNPTTM----G 691
             Q      A +AQ K NY A +E+GK+      A ++N  EE RKS  G    T     G
Sbjct: 1067 RQGYQMMAAQAAQQKMNYGASLEDGKSGSIGGAATANNTPEEQRKSGGGAIGKTSGGNGG 1126

Query: 692  QSIAFA-RPDMSDP--SSLAANNVIDSSGRSLHLG 723
            QSIAF+ + D++D   S++ + +++DSS R L+LG
Sbjct: 1127 QSIAFSNKQDLADASVSAVTSGSIVDSSSRLLNLG 1161


>AT3G22380.1 | Symbols: TIC | time for coffee | chr3:7913181-7918879
            FORWARD LENGTH=1550
          Length = 1550

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 314/755 (41%), Positives = 390/755 (51%), Gaps = 116/755 (15%)

Query: 8    REEKFQIDLMAPPPTGKSSPER--DVVENNLXXXXXXXXXXXXXXS--LRMNXXXXXXXX 63
             +EKF+IDLMAPPP  +SS ER  +++E                    L+ +        
Sbjct: 484  EKEKFEIDLMAPPPV-RSSSERGGEMMECVAAEAKPKVTEVETEAKPLLKEDRSDPAIHD 542

Query: 64   XXXXXXXXXXSESQKLAIVQKERGIDLQLDLEKADRMDTSGNGSSVSKKXXXXXXXXXXX 123
                      +E++       ER  +L+LDL+K+D +    N   V K            
Sbjct: 543  SQEKKRPRMVAEAEHHKF---ERNCELKLDLDKSDHVGLV-NKHHVQKPPPQQQLSVP-- 596

Query: 124  XXTNSEKNVQTNSLPLPMSVPPNWPGGLPSMGYMTPLQGVVSMDGTTVTPAAI-PPPHLL 182
                 +K  Q + LPL MS+P  WPGGLP+MGYM P QGVV  D ++++ AA+ PPPHLL
Sbjct: 597  -----DKTAQASHLPLHMSMP-GWPGGLPTMGYMAPTQGVVPTDTSSLSAAAMQPPPHLL 650

Query: 183  FNQPRPKRCATHCYIARNILYHQQIARMNPFWPAAAGSAPMYGAKAGNLNVVPSPELLGN 242
            FNQPRPKRCATHCYIARNI  HQQ  +MNPFWPAAAGSAPMYG KA NL+++P  EL G+
Sbjct: 651  FNQPRPKRCATHCYIARNIQSHQQFTKMNPFWPAAAGSAPMYGTKACNLSLMPPTELQGS 710

Query: 243  VPARAVNPTQDKVQSLTMFPSHIGKDKVPQPANVDNSSRKQILLQQGLPPGAAPSNILHG 302
            V  R+ NP QDK    T   S             + + R Q++LQQ LPPGAA S ILHG
Sbjct: 711  VLGRSSNPVQDKNSQSTSKSS-------------ETAQRNQLMLQQALPPGAANS-ILHG 756

Query: 303  PAFIFPLNQQ----QAAAAASVRPGSMKSLPVTSNGXXXXXXXXXXXXXXXXXXXXXTPA 358
            P FIFPL QQ       AAASVRP +     +TS+G                      P 
Sbjct: 757  PTFIFPLGQQPHAAATIAAASVRPPNSG---ITSSG---PTATSTSMNGSASATPAGAPT 810

Query: 359  MSFSYPSMPGNETQYLAILQNNAYPFPIPAHVGGPPAYRGTHGQPPFPFFNGSFYXXXXX 418
            MSFSYP+MPGNETQYLAILQNN YPFP+PAHVG  PAYRG  GQ P PFFNGSFY     
Sbjct: 811  MSFSYPAMPGNETQYLAILQNNGYPFPVPAHVGAQPAYRGAPGQ-PMPFFNGSFYSSQMI 869

Query: 419  XXXXXXXXXXXXXXXXXXXXXX------NTSISTGSS-SQKHAQNQQQKP--NHASSSNG 469
                                        N S STGSS +QKH QNQQ +P  NH      
Sbjct: 870  QPPHHQPQKQHQQQLTGQMLQSHAPNNQNGSASTGSSAAQKHLQNQQLRPPINH------ 923

Query: 470  VGGSLQGFPVTKNPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNHHTSHPA 529
              G+ QGFP  K                                         + T H  
Sbjct: 924  --GNSQGFPTHK-------------------------VQSQPLNFQQRQQPRENATQH-- 954

Query: 530  RQVENEMGGEDSPSTADSRFTRAAMNIYGQNFAMPMQAPNFALMT---PAISGAGSNGSH 586
                +E  GEDSPSTADSR +R+ +  YGQN+ M MQ  N  LM+   P     GS+ SH
Sbjct: 955  ----SETVGEDSPSTADSRGSRSNV-AYGQNYGMQMQPTNLGLMSSPAPGGGVVGSSSSH 1009

Query: 587  GEKKQPQQQHPGSKAGGET--SPAFAMSFASINGAAAATGLDLSSFAHNHSIMQS--NHN 642
            GEKK  QQ    SKAG E+  SP +AM+FA+ NGA  A  L++SS A NH++  S     
Sbjct: 1010 GEKKSQQQV---SKAGVESFQSPGYAMTFATFNGANTAPTLNMSSIAQNHAMFHSMPEAA 1066

Query: 643  YQIMAGAQAASAQLKKNYHA-VEEGKN-----VANSSNL-EEDRKSMSGKNPTTM----G 691
             Q      A +AQ K NY A +E+GK+      A ++N  EE RKS  G    T     G
Sbjct: 1067 RQGYQMMAAQAAQQKMNYGASLEDGKSGSIGGAATANNTPEEQRKSGGGAIGKTSGGNGG 1126

Query: 692  QSIAFA-RPDMSDP--SSLAANNVIDSSGRSLHLG 723
            QSIAF+ + D++D   S++ + +++DSS R L+LG
Sbjct: 1127 QSIAFSNKQDLADASVSAVTSGSIVDSSSRLLNLG 1161


>AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like |
           chr3:23336318-23340161 REVERSE LENGTH=978
          Length = 978

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 121/288 (42%), Gaps = 59/288 (20%)

Query: 137 LPLPMSVPPNWPGGLPSMGYMTPLQGVVSMDGTTVTPAAIPPPHLLFNQPRPKRCATHCY 196
           LPLP++V  +WP G+P  G++  +Q    +D +  +   +    +  +QPRPKRCATH +
Sbjct: 385 LPLPVAVA-SWPSGVPPQGHVALIQTGKPVDESNGSSKLVQGAPISASQPRPKRCATHFF 443

Query: 197 IARNILYHQQIARMNPFWPAAAGSAPMYGAK----AGNLNVVPSPELLGNVPARAVNPTQ 252
           IARNI  HQ   + N       GS  + G      AGN      P L G+ P        
Sbjct: 444 IARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAGN------PSLHGSSP-------- 489

Query: 253 DKVQSLTMFPSHIGKDKVPQPANVDNSSRKQILLQQGLPPGAAPSNI--LHGPAFIFPLN 310
             + SL   P     D +  P NV  S        +   P   P++I  +  PAFI+P N
Sbjct: 490 --ILSLNSQPHVRNGDNISAP-NVKASESGHFASTRQNKPQPPPASISVVPAPAFIYPAN 546

Query: 311 ---QQQAAAAASVRPGSMKSLPVTSNGXXXXXXXXXXXXXXXXXXXXXTPAMSFSYPSMP 367
              Q     + S RP     L V                           + +FS+PS  
Sbjct: 547 HHLQPVMVPSKSSRPTKSPHLAV------------------------GLASANFSHPSSS 582

Query: 368 GNETQ--YLAILQNNAYPFPIPAHVGGPPAYRGTHGQPPFPFFNGSFY 413
            +E    YL ++ NNAY F + + + G     GT  Q   PF+NGSFY
Sbjct: 583 ASEVSSPYLTVIPNNAYSFQLSSTIRG-----GTPSQ-AVPFYNGSFY 624


>AT3G63180.2 | Symbols: ATTKL, TKL | TIC-like |
           chr3:23336318-23340161 REVERSE LENGTH=970
          Length = 970

 Score = 76.3 bits (186), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 119/288 (41%), Gaps = 67/288 (23%)

Query: 137 LPLPMSVPPNWPGGLPSMGYMTPLQGVVSMDGTTVTPAAIPPPHLLFNQPRPKRCATHCY 196
           LPLP++V  +WP G+P  G++  +Q    +D +  +   +        QPRPKRCATH +
Sbjct: 385 LPLPVAVA-SWPSGVPPQGHVALIQTGKPVDESNGSSKLV--------QPRPKRCATHFF 435

Query: 197 IARNILYHQQIARMNPFWPAAAGSAPMYGAK----AGNLNVVPSPELLGNVPARAVNPTQ 252
           IARNI  HQ   + N       GS  + G      AGN      P L G+ P        
Sbjct: 436 IARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAGN------PSLHGSSP-------- 481

Query: 253 DKVQSLTMFPSHIGKDKVPQPANVDNSSRKQILLQQGLPPGAAPSNI--LHGPAFIFPLN 310
             + SL   P     D +  P NV  S        +   P   P++I  +  PAFI+P N
Sbjct: 482 --ILSLNSQPHVRNGDNISAP-NVKASESGHFASTRQNKPQPPPASISVVPAPAFIYPAN 538

Query: 311 ---QQQAAAAASVRPGSMKSLPVTSNGXXXXXXXXXXXXXXXXXXXXXTPAMSFSYPSMP 367
              Q     + S RP     L V                           + +FS+PS  
Sbjct: 539 HHLQPVMVPSKSSRPTKSPHLAV------------------------GLASANFSHPSSS 574

Query: 368 GNETQ--YLAILQNNAYPFPIPAHVGGPPAYRGTHGQPPFPFFNGSFY 413
            +E    YL ++ NNAY F + + + G     GT  Q   PF+NGSFY
Sbjct: 575 ASEVSSPYLTVIPNNAYSFQLSSTIRG-----GTPSQ-AVPFYNGSFY 616