Miyakogusa Predicted Gene
- Lj5g3v2046030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2046030.1 tr|B9HVZ8|B9HVZ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_660193 PE=4
SV=1,40.8,3e-18,RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED,NULL; XS,XS
domain; seg,NULL,CUFF.56539.1
(476 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of ... 428 e-120
AT1G78810.2 | Symbols: | unknown protein; Has 35333 Blast hits ... 59 7e-09
AT1G78810.1 | Symbols: | unknown protein; Has 75 Blast hits to ... 59 7e-09
AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing prote... 57 4e-08
AT3G12550.2 | Symbols: | XH/XS domain-containing protein | chr3... 51 2e-06
AT3G12550.1 | Symbols: | XH/XS domain-containing protein | chr3... 51 2e-06
AT4G01180.1 | Symbols: | XH/XS domain-containing protein | chr4... 50 4e-06
>AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of
unknown function XS (InterPro:IPR005380); BEST
Arabidopsis thaliana protein match is: XS
domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1);
Has 565 Blast hits to 510 proteins in 121 species:
Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32;
Plants - 51; Viruses - 4; Other Eukaryotes - 195
(source: NCBI BLink). | chr3:7953455-7957605 FORWARD
LENGTH=510
Length = 510
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/402 (56%), Positives = 273/402 (67%), Gaps = 28/402 (6%)
Query: 81 AYGFHMLERRTIVLADGSVRSYFALPPDYQDFAPPPRHLDRFDMRFPP--RPGFRNPMEP 138
YGFHMLERRTIVLADGSVRSYFALPP+Y DF P R RFPP FR+
Sbjct: 121 TYGFHMLERRTIVLADGSVRSYFALPPNYMDFPPQSRLAGPVFGRFPPFYPEEFRDQR-- 178
Query: 139 PAKRKYGDEDGGD------EFAKQREQLLRNAN---NGFASGGSLKRDLGGDAAESRPSK 189
KRKY E+ D E +QR+Q ++ AN + F +G S RD+G D ++
Sbjct: 179 -MKRKYPGEEEIDRRDERAEMMRQRQQFMQYANPNDHSFMAGTS--RDVGEDVRAAK--- 232
Query: 190 QXXXXXXXXXXXXXXXXXLQVDQDALKKAFFNFVKLINENTTLKKSYLEDGKQGRLQCVA 249
QVDQ ALKK+F FVK + E+ KK+YLE+G++GRLQC+
Sbjct: 233 -----HMRVGSSRHDNGGFQVDQVALKKSFLGFVKRVFEDPMEKKNYLENGRKGRLQCLV 287
Query: 250 CGSANGRSAKEFPDMHALVMHSYNSDNADLHVDHLGLHKALCVLMGWNYSKPPDNSKTYQ 309
CG RS+K+ D H+LVMH+Y SD++ V HLGLHKALCVLMGWN+SK PDNSK YQ
Sbjct: 288 CG----RSSKDVQDTHSLVMHTYCSDDSSSRVHHLGLHKALCVLMGWNFSKAPDNSKAYQ 343
Query: 310 FLSADEAAANQDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKS 369
L ADEAA NQ LI+WPP VI+ NT+TGK ++GRMEG G K MD +IRELG TGGKSKS
Sbjct: 344 NLPADEAAINQAQLIIWPPHVIVQNTSTGKGKEGRMEGFGNKTMDNRIRELGLTGGKSKS 403
Query: 370 LYGREGHLGITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQILGKDDENNPNL 429
LYGREGHLGITL KFAGD SGL++A+R+AE+FEK N GRK W RVQP KDDE NP L
Sbjct: 404 LYGREGHLGITLFKFAGDDSGLRDAMRMAEYFEKINRGRKSWGRVQPLTPSKDDEKNPGL 463
Query: 430 VKVDEKKGDKRRILYGYLGTAFDLDKVDFDTRKKLVIESWRE 471
V+VD + G+K+RI YGYL T DLDKVD +T+KK IES RE
Sbjct: 464 VEVDGRTGEKKRIFYGYLATVTDLDKVDVETKKKTTIESLRE 505
>AT1G78810.2 | Symbols: | unknown protein; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:29628688-29630510 REVERSE LENGTH=480
Length = 480
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 220 FNFV-KLINENTTLKKSYLEDGKQGRLQCVACGSANGRSAKEFPDMHALVMHSYNSDNAD 278
F F+ ++ EN LK+ Y ++ G C+ CG +S ++F AL+ HS D
Sbjct: 186 FQFLSRVFEENVKLKEYYEKNTGNGEFWCLVCGGIGEKSCRKFKSCLALIQHSLTIHKTD 245
Query: 279 LHVDHLGLHKALCVLMGWNYSKPPDNSK 306
L + H L + +C ++GW+ + P +S+
Sbjct: 246 LKIQHRALAQVVCNVLGWDVNNPVVSSQ 273
>AT1G78810.1 | Symbols: | unknown protein; Has 75 Blast hits to 52
proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). |
chr1:29628538-29630510 REVERSE LENGTH=481
Length = 481
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 220 FNFV-KLINENTTLKKSYLEDGKQGRLQCVACGSANGRSAKEFPDMHALVMHSYNSDNAD 278
F F+ ++ EN LK+ Y ++ G C+ CG +S ++F AL+ HS D
Sbjct: 186 FQFLSRVFEENVKLKEYYEKNTGNGEFWCLVCGGIGEKSCRKFKSCLALIQHSLTIHKTD 245
Query: 279 LHVDHLGLHKALCVLMGWNYSKPPDNSK 306
L + H L + +C ++GW+ + P +S+
Sbjct: 246 LKIQHRALAQVVCNVLGWDVNNPVVSSQ 273
>AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing protein
/ XS zinc finger domain-containing protein-related |
chr5:7943621-7945874 FORWARD LENGTH=625
Length = 625
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 32/236 (13%)
Query: 242 QGRLQCVACGSANGRSAKEFPDMHALVMHSYN--SDNADLHVDHLGLHKALCVLMGWNYS 299
Q + C AC NG A ++ ++H L+ H+ + LH + + + + G +
Sbjct: 223 QRQWHCPAC--QNGPGAIDWYNLHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVI 280
Query: 300 KPPDNSKTYQFLSADEAAANQDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRE 359
+ ++ L DE +D I+WPP+VII NT K + + GMG + + +
Sbjct: 281 PCGEIYGQWKGLGEDE----KDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDK 336
Query: 360 LGFTGGKSKSLYGREGHLGITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQIL 419
+ +++ YG +GH G++++ F +G EA RL + R W + +
Sbjct: 337 --YEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKRSMFS 394
Query: 420 GKDDENNPNLVKVDEKKGDKRRILYGYLGTAFDLDKVDF----DTRKKLVIESWRE 471
G R LYG+L T DLD + TR K ++S++E
Sbjct: 395 G------------------GVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQE 432
>AT3G12550.2 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 324 IMWPPLVIIHNTNTGKSRDGR--MEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGITL 381
++WP ++ N T + DGR G K D IR GF + ++++ R GH G +
Sbjct: 120 LVWPWKGVLVNIPTTSTEDGRSCTGESGPKLKDELIRR-GFNPIRVRTVWDRFGHSGTGI 178
Query: 382 VKFAGDQSGLKEAIRLAEHFEKENHGRKDW 411
V+F D +GL++A+ + +E + HG+KDW
Sbjct: 179 VEFNRDWNGLQDALVFKKAYEGDGHGKKDW 208
>AT3G12550.1 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 324 IMWPPLVIIHNTNTGKSRDGR--MEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGITL 381
++WP ++ N T + DGR G K D IR GF + ++++ R GH G +
Sbjct: 120 LVWPWKGVLVNIPTTSTEDGRSCTGESGPKLKDELIRR-GFNPIRVRTVWDRFGHSGTGI 178
Query: 382 VKFAGDQSGLKEAIRLAEHFEKENHGRKDW 411
V+F D +GL++A+ + +E + HG+KDW
Sbjct: 179 VEFNRDWNGLQDALVFKKAYEGDGHGKKDW 208
>AT4G01180.1 | Symbols: | XH/XS domain-containing protein |
chr4:501287-503394 REVERSE LENGTH=554
Length = 554
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 316 AAANQDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREG 375
+ +Q +WP + ++ N T GR G + + GF + K ++ +G
Sbjct: 24 SGQDQQKRYVWPWVGLVANVPTEVEPSGRRVGKSGSTLRDEFTLKGFNPTRVKPIWNTKG 83
Query: 376 HLGITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWAR 413
H G LV+FA D G + A++ + F+ + HG++DW +
Sbjct: 84 HTGFALVEFAKDFKGFESAMQFEKSFDLDRHGKRDWKK 121