Miyakogusa Predicted Gene
- Lj5g3v2045600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2045600.1 Non Chatacterized Hit- tr|I1NGH9|I1NGH9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.398
PE=4,80.36,0.000000000000001,seg,NULL; S-methyl_trans,Homocysteine
S-methyltransferase; HCY,Homocysteine S-methyltransferase;
PRE,gene.g62846.t1.1
(269 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase 3... 306 1e-83
AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methy... 289 1e-78
AT3G25900.3 | Symbols: HMT-1 | Homocysteine S-methyltransferase ... 252 2e-67
AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltra... 235 3e-62
AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltra... 234 5e-62
AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methy... 209 2e-54
>AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase 3 |
chr3:8033200-8035710 REVERSE LENGTH=347
Length = 347
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 148/218 (67%), Positives = 174/218 (79%)
Query: 2 ETALFMRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLD 61
ET+ M DFL+KCGGYAV+DGGFATEL+RHGAD++DPLWSAKCLI+SPHLV +VHLDYL+
Sbjct: 8 ETSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLE 67
Query: 62 AGANIILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRD 121
+GANII+TASYQAT+QGF AKG S E E LLRRSVE+ EAREI+ RCTK S DF
Sbjct: 68 SGANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYA 127
Query: 122 ERYRRRPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIA 181
+ RRPILVAASVGSYGAYLADG+EY+G YGD+V+ +TLKDFHR RV+IL +GADLIA
Sbjct: 128 GKASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIA 187
Query: 182 FETIPNKMXXXXXXXXXXXXGIEIPAWLSFSCKDESNV 219
FETIPNK+ I+IPAW SF+ KD +V
Sbjct: 188 FETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSV 225
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 219 VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGIAEAIYGKPQ 267
+KS G +E DFV Y+ KW DAGASLFGGCCRTTPNTIR IA+ + +P
Sbjct: 290 IKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVLSDEPS 338
>AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine
methyltransferase 2 | chr3:23370575-23372587 REVERSE
LENGTH=333
Length = 333
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/263 (56%), Positives = 192/263 (73%), Gaps = 9/263 (3%)
Query: 7 MRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGANI 66
M+DFL + GGYAVIDGG ATE ERHGADL+DPLWSAKCL++SPHL+ VHLDYL+AGA+I
Sbjct: 9 MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68
Query: 67 ILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYRR 126
I +ASYQAT+QGFEAKGFSREE E+LL++SVE+A EAR Y +C SS + D+ ++
Sbjct: 69 ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSS--MDDKILKK 126
Query: 127 RPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETIP 186
RPILVAASVGSYGAYLADG+EY+G YGD++T++ LKDFHR R+++L ++GADLIAFETIP
Sbjct: 127 RPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIP 186
Query: 187 NKMXXXXXXXXXXXXGIEIPAWLSFSCKDESNVKSSGVAERDFVPYIDKWCDAGASLFGG 246
NK+ ++IP W SF+ KD NV SG + ++ + I + C+ ++
Sbjct: 187 NKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNV-VSGDSIKECIS-IAENCEKVVAVGIN 244
Query: 247 CCRTTPNTIRGIA---EAIYGKP 266
C T P I G+ E + KP
Sbjct: 245 C--TPPRFIEGLVLEIEKVTSKP 265
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 219 VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGI 258
V+++GV + DFV Y++KW DAG SL GGCCRTTP TIR I
Sbjct: 284 VENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAI 323
>AT3G25900.3 | Symbols: HMT-1 | Homocysteine S-methyltransferase
family protein | chr3:9480964-9482684 FORWARD LENGTH=306
Length = 306
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 183/299 (61%), Gaps = 52/299 (17%)
Query: 6 FMRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGAN 65
+ D + KCGG AV+DGGFAT+LE HGA ++DPLWSA LI +P L++RVH++YL+AGA+
Sbjct: 9 LLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGAD 68
Query: 66 IILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYR 125
I++T+SYQAT+ GF ++G S EE E+LL++SVELA+EAR+ + + +K + Y
Sbjct: 69 IVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK-----VSGHSYN 123
Query: 126 RRPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETI 185
R LVAAS+GSYGAYLADG+EY+G YG+ V++ LKDFHR R+++LV+AG DL+AFETI
Sbjct: 124 R--ALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETI 181
Query: 186 PNKMXXXXXXXXXXXXGIEIPAWLSFSCKD------------------ESN--------- 218
PNK+ ++IPAW+ F+ D +SN
Sbjct: 182 PNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYALTKKA 241
Query: 219 ------------------VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGIA 259
+ S + +F + KW D GA L GGCCRTTP+TI I+
Sbjct: 242 IVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINAIS 300
>AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | Homocysteine
S-methyltransferase family protein |
chr3:9480964-9482416 FORWARD LENGTH=268
Length = 268
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 155/210 (73%), Gaps = 7/210 (3%)
Query: 6 FMRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGAN 65
+ D + KCGG AV+DGGFAT+LE HGA ++DPLWSA LI +P L++RVH++YL+AGA+
Sbjct: 9 LLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGAD 68
Query: 66 IILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYR 125
I++T+SYQAT+ GF ++G S EE E+LL++SVELA+EAR+ + + +K + Y
Sbjct: 69 IVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK-----VSGHSYN 123
Query: 126 RRPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETI 185
R LVAAS+GSYGAYLADG+EY+G YG+ V++ LKDFHR R+++LV+AG DL+AFETI
Sbjct: 124 RA--LVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETI 181
Query: 186 PNKMXXXXXXXXXXXXGIEIPAWLSFSCKD 215
PNK+ ++IPAW+ F+ D
Sbjct: 182 PNKLEAQACVELLEEEKVQIPAWICFTSVD 211
>AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | Homocysteine
S-methyltransferase family protein |
chr3:9480964-9482684 FORWARD LENGTH=326
Length = 326
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 155/210 (73%), Gaps = 7/210 (3%)
Query: 6 FMRDFLDKCGGYAVIDGGFATELERHGADLHDPLWSAKCLISSPHLVRRVHLDYLDAGAN 65
+ D + KCGG AV+DGGFAT+LE HGA ++DPLWSA LI +P L++RVH++YL+AGA+
Sbjct: 9 LLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGAD 68
Query: 66 IILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNARCTKDSSDFIRDERYR 125
I++T+SYQAT+ GF ++G S EE E+LL++SVELA+EAR+ + + +K + Y
Sbjct: 69 IVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK-----VSGHSYN 123
Query: 126 RRPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVKILVDAGADLIAFETI 185
R LVAAS+GSYGAYLADG+EY+G YG+ V++ LKDFHR R+++LV+AG DL+AFETI
Sbjct: 124 R--ALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETI 181
Query: 186 PNKMXXXXXXXXXXXXGIEIPAWLSFSCKD 215
PNK+ ++IPAW+ F+ D
Sbjct: 182 PNKLEAQACVELLEEEKVQIPAWICFTSVD 211
>AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine
methyltransferase 2 | chr3:23370575-23371974 REVERSE
LENGTH=293
Length = 293
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 153/219 (69%), Gaps = 9/219 (4%)
Query: 51 LVRRVHLDYLDAGANIILTASYQATLQGFEAKGFSREEGETLLRRSVELALEAREIYNAR 110
L+ +VHLDYL+AGA+II +ASYQAT+QGFEAKGFSREE E+LL++SVE+A EAR Y +
Sbjct: 13 LMEQVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDK 72
Query: 111 CTKDSSDFIRDERYRRRPILVAASVGSYGAYLADGAEYTGDYGDAVTVQTLKDFHRERVK 170
C SS + D+ ++RPILVAASVGSYGAYLADG+EY+G YGD++T++ LKDFHR R++
Sbjct: 73 CGTSSS--MDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQ 130
Query: 171 ILVDAGADLIAFETIPNKMXXXXXXXXXXXXGIEIPAWLSFSCKDESNVKSSGVAERDFV 230
+L ++GADLIAFETIPNK+ ++IP W SF+ KD NV SG + ++ +
Sbjct: 131 VLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNV-VSGDSIKECI 189
Query: 231 PYIDKWCDAGASLFGGCCRTTPNTIRGIA---EAIYGKP 266
I + C+ ++ C T P I G+ E + KP
Sbjct: 190 S-IAENCEKVVAVGINC--TPPRFIEGLVLEIEKVTSKP 225
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 219 VKSSGVAERDFVPYIDKWCDAGASLFGGCCRTTPNTIRGI 258
V+++GV + DFV Y++KW DAG SL GGCCRTTP TIR I
Sbjct: 244 VENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAI 283