Miyakogusa Predicted Gene

Lj5g3v2045470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045470.1 CUFF.56528.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT ...   107   2e-24
AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT ...   104   1e-23
AT4G14713.2 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT ...   104   1e-23

>AT4G14720.1 | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT
          motif family protein | chr4:8432452-8434934 REVERSE
          LENGTH=315
          Length = 315

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 56/59 (94%)

Query: 15 RSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDE 73
          +SIL+KPLK LTE+DISQLTREDCR+FLKEKGMRRPSWNKSQAIQQV+SLKAL EP D+
Sbjct: 9  KSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKALYEPGDD 67


>AT4G14713.1 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT
          motif family protein | chr4:8427084-8429525 REVERSE
          LENGTH=313
          Length = 313

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 55/59 (93%)

Query: 15 RSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDE 73
          +SIL KPLK LTE+DISQLTREDCR+FLK+KGMRRPSWNKSQAIQQV+SLKAL EP D+
Sbjct: 9  KSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDD 67


>AT4G14713.2 | Symbols: PPD1, TIFY4A | TIFY domain/Divergent CCT
          motif family protein | chr4:8427388-8429525 REVERSE
          LENGTH=261
          Length = 261

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 55/59 (93%)

Query: 15 RSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDE 73
          +SIL KPLK LTE+DISQLTREDCR+FLK+KGMRRPSWNKSQAIQQV+SLKAL EP D+
Sbjct: 9  KSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKALYEPGDD 67