Miyakogusa Predicted Gene

Lj5g3v2045250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045250.1 Non Chatacterized Hit- tr|Q1SKW3|Q1SKW3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,71.67,0.000000000000007,coiled-coil,NULL,
NODE_72779_length_1196_cov_27.862040.path2.1
         (247 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32980.1 | Symbols:  | unknown protein; Has 158 Blast hits to...   386   e-108

>AT2G32980.1 | Symbols:  | unknown protein; Has 158 Blast hits to
           154 proteins in 73 species: Archae - 0; Bacteria - 61;
           Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other
           Eukaryotes - 14 (source: NCBI BLink). |
           chr2:13997569-13999715 REVERSE LENGTH=296
          Length = 296

 Score =  386 bits (991), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/229 (81%), Positives = 209/229 (91%), Gaps = 1/229 (0%)

Query: 1   MSMGSESSWVGKKPVKRIGGMSDALSIASDLGFSVSSLPTHQEALQNPSTATGEKGEDLI 60
           MSMG +++WVGKKP++RIGG+SDALSIASDLGF+V+  P+ QE LQ+ +++ GE+G+DLI
Sbjct: 1   MSMGGDTTWVGKKPIRRIGGLSDALSIASDLGFAVAPPPS-QEELQSFASSNGERGDDLI 59

Query: 61  KVLRELTTVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQNKD 120
           +VLREL+ VQRKIADLQVELQGRKDDKNVAHLTHV EM+KKIETL  IT ILKDVIQNKD
Sbjct: 60  RVLRELSVVQRKIADLQVELQGRKDDKNVAHLTHVGEMQKKIETLSRITQILKDVIQNKD 119

Query: 121 RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQNFKEPPSVWG 180
           RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASV+DFQWSQNFKEPPSVWG
Sbjct: 120 RIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVSDFQWSQNFKEPPSVWG 179

Query: 181 EMLRPIPVALASCTRFFEAMSATRESFATLQKLRVGHVDSPVPRTPTSD 229
           EMLRPIPVALASCTRFFEAMSA RESFATLQ+LRVG+    +P TP  +
Sbjct: 180 EMLRPIPVALASCTRFFEAMSAMRESFATLQELRVGNSAVSLPTTPGGN 228