Miyakogusa Predicted Gene

Lj5g3v2045000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045000.1 Non Chatacterized Hit- tr|I3S5R5|I3S5R5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.06,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION
SUBUNIT (SOH1),Media,CUFF.56488.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19910.1 | Symbols: MED31 | SOH1 family protein | chr5:673148...   236   8e-63
AT5G19910.2 | Symbols: MED31 | SOH1 family protein | chr5:673148...   219   1e-57

>AT5G19910.1 | Symbols: MED31 | SOH1 family protein |
           chr5:6731484-6732821 REVERSE LENGTH=196
          Length = 196

 Score =  236 bits (602), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 116/131 (88%)

Query: 1   MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60
           MAS  +  +     PS PKN YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQN NFR+AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 121 NYRNNRLKHIL 131
           NYRNNRLKHIL
Sbjct: 121 NYRNNRLKHIL 131


>AT5G19910.2 | Symbols: MED31 | SOH1 family protein |
           chr5:6731484-6732821 REVERSE LENGTH=226
          Length = 226

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 116/161 (72%), Gaps = 30/161 (18%)

Query: 1   MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60
           MAS  +  +     PS PKN YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNK------------ 108
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQN NFR+AMAHP NK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 109 ------------------ELAHRQQFYFWKNYRNNRLKHIL 131
                             ELAHRQQFY+WKNYRNNRLKHIL
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHIL 161