Miyakogusa Predicted Gene

Lj5g3v2044990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2044990.1 tr|F4KDC4|F4KDC4_ARATH Hydroxyproline-rich
glycoprotein family protein OS=Arabidopsis thaliana
GN=At,33.33,2e-16,DUF688,Protein of unknown function
DUF688,CUFF.56490.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51680.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...    92   6e-19

>AT5G51680.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:20997591-20998755 FORWARD LENGTH=343
          Length = 343

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 154/351 (43%), Gaps = 66/351 (18%)

Query: 5   KKHVREPPSVPFLWELMPGIPKKDWKPEASS----SVCNHYLPKIPLKLIASVPFVWEEK 60
           +K +R+PPSVPF+WE  PG PKK+W+P  ++             +P+KL+ SVPF WEE 
Sbjct: 13  RKQLRQPPSVPFIWEERPGFPKKNWQPSLATFVPSPPPLPPPIPVPVKLVTSVPFRWEET 72

Query: 61  PGIPL-------PNFSH------------------------VSVDY--VPPKPSTILFHV 87
           PG PL       P   H                        V  D+   P +P       
Sbjct: 73  PGKPLPASSNDPPQLPHPPLETATPTPLPPPVPVPVKQVTSVPFDWEETPGQPYPCFVDT 132

Query: 88  ASSSGYSLASNYDYDYNNKQSSRDSQSITTNLDLEAFSFDAAPSLLANCLVSSAKISNAI 147
           +              Y + ++S D     ++    +       SLLA     S  IS A+
Sbjct: 133 SPPELLDQPLPPPPMYGDVETSSDIFDDASSDSFSSVP-----SLLATN--RSVSISGAV 185

Query: 148 PLHEKSSSEHDCDQLET-----PSSPASSETDSDTSSYATGRSSPTGSAILECLFPLRTP 202
            + E        D L T     P+SPA  E+D  TSSY TG SS  G++ LE LFP   P
Sbjct: 186 AVDEFD------DNLNTVTSSMPTSPAY-ESDDSTSSYMTGASSLVGASFLEKLFPRLLP 238

Query: 203 T---KSSFLERDGNSTKVLSLGALEQKGKDFGSEDCPSDMVRRPATLGELIMMSRRGSYV 259
           +   K++  E    ST  L          D  S   P   VR P TLGELIMMSRR SY+
Sbjct: 239 SEKVKAAVSEDVQVSTHPLHEEVKLTTETDNMSIGFP---VRTPQTLGELIMMSRRRSYM 295

Query: 260 RKANQIGKWDPPKIMRKTGRKQAFGCFSMVTSSSVIEGLLKKKY-PKLELI 309
           R+A ++ K +P     K G   A  C   V    +IEGL  KKY P+L+LI
Sbjct: 296 RRAVEMRKQNPYTEFTKNG---ADSCCLFVPGIKMIEGLEWKKYQPRLKLI 343