Miyakogusa Predicted Gene

Lj5g3v2033940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2033940.1 tr|Q32ZJ5|Q32ZJ5_SOLTU RAR1-like protein
(Fragment) OS=Solanum tuberosum PE=4
SV=1,68.49,5e-19,CHORD,Cysteine/histidine-rich domain; RAR1,NULL;
CYSTEINE AND HISTIDINE-RICH DOMAIN (CHORD)-CONTAINI,CUFF.56483.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51700.1 | Symbols: PBS2, ATRAR1, RPR2, RAR1 | protein bindin...   243   6e-65

>AT5G51700.1 | Symbols: PBS2, ATRAR1, RPR2, RAR1 | protein
           binding;zinc ion binding | chr5:21001373-21003143
           REVERSE LENGTH=226
          Length = 226

 Score =  243 bits (619), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 138/184 (75%), Gaps = 5/184 (2%)

Query: 1   MKEWSCCKKRSHDFSLFLQIPGCKTGKHTTEKQVIA-PVKKXXXXXXXXXXXXXXXXKDS 59
           MKEWSCCK+RSHDFSLFL+IPGCKTGKHTTEK V+A  V K                KDS
Sbjct: 44  MKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKHPVAAPTSSPDANAATKDS 103

Query: 60  CSRCRQGFFCSDHGSQSKAVNIVGDKSVNRAGDAPAVNSSIVQAPKPPKKIVDINEPQTC 119
           CSRCRQGFFCSDHGSQ K       +++N  G A       + AP   K ++DIN+PQ C
Sbjct: 104 CSRCRQGFFCSDHGSQPKEQI---KQTLNTPGQAEEEKIEPL-APPVQKAVIDINQPQVC 159

Query: 120 KNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHN 179
           KNKGCGQTFKE+DNH+TACS+HPGPAVFHDR+RGWKCCDVHVKEFDEF+ IPPCTKGWH+
Sbjct: 160 KNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHS 219

Query: 180 ADPD 183
           + PD
Sbjct: 220 SSPD 223



 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%)

Query: 119 CKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWH 178
           C+  GC   F + DN   +C +H     FHD M+ W CC     +F  F+ IP C  G H
Sbjct: 12  CQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKH 71

Query: 179 NAD 181
             +
Sbjct: 72  TTE 74